Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48500 * 109.46900 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47108 * 299.99724 * 3 2 1 6 6 H 1.48501 * 109.47484 * 59.99650 * 3 2 1 7 7 C 1.38811 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99629 * 158.39224 * 7 2 1 9 9 N 1.36937 * 120.00479 * 338.39073 * 7 2 1 10 10 C 1.46489 * 120.00328 * 143.99201 * 9 7 2 11 11 C 1.52999 * 109.47227 * 270.00025 * 10 9 7 12 12 C 1.52997 * 109.47620 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47328 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99760 * 180.02562 * 13 12 11 15 15 O 1.21515 * 120.00277 * 359.97438 * 14 13 12 16 16 C 1.48153 * 119.99801 * 179.97438 * 14 13 12 17 17 C 1.39719 * 120.18443 * 179.72013 * 16 14 13 18 18 C 1.38826 * 117.89942 * 179.76479 * 17 16 14 19 19 C 1.38570 * 118.06822 * 0.52543 * 18 17 16 20 20 N 1.32175 * 120.06674 * 359.70351 * 19 18 17 21 21 N 1.28348 * 122.30146 * 0.02748 * 20 19 18 22 22 C 1.46498 * 119.99523 * 323.99140 * 9 7 2 23 23 C 1.50707 * 109.47159 * 263.95506 * 22 9 7 24 24 C 1.38669 * 120.41819 * 264.91745 * 23 22 9 25 25 C 1.38625 * 118.42085 * 180.23917 * 24 23 22 26 26 C 1.38228 * 119.15875 * 359.75514 * 25 24 23 27 27 N 1.31855 * 120.76470 * 359.97438 * 26 25 24 28 28 C 1.31879 * 121.72322 * 0.02562 * 27 26 25 29 29 H 0.97002 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47413 * 29.99882 * 10 9 7 31 31 H 1.08999 * 109.47535 * 149.99860 * 10 9 7 32 32 H 1.09004 * 109.47317 * 300.00204 * 11 10 9 33 33 H 1.09007 * 109.47357 * 60.00051 * 11 10 9 34 34 H 1.09002 * 109.46809 * 299.99698 * 12 11 10 35 35 H 1.08999 * 109.47302 * 59.99736 * 12 11 10 36 36 H 0.96993 * 120.00018 * 359.97438 * 13 12 11 37 37 H 1.07999 * 121.04865 * 0.02562 * 17 16 14 38 38 H 1.07991 * 120.96432 * 180.23071 * 18 17 16 39 39 H 1.07993 * 119.96903 * 179.72962 * 19 18 17 40 40 H 1.09000 * 109.47375 * 143.95710 * 22 9 7 41 41 H 1.08999 * 109.47561 * 23.95297 * 22 9 7 42 42 H 1.08001 * 120.79358 * 359.97438 * 24 23 22 43 43 H 1.07997 * 120.42207 * 179.73329 * 25 24 23 44 44 H 1.08001 * 119.61444 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.61286 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3966 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0333 -1.2352 -0.3439 9 7 1.3977 -2.3462 0.4378 10 6 1.6897 -3.6270 -0.2104 11 6 0.7106 -3.8494 -1.3649 12 6 1.0159 -5.1868 -2.0423 13 7 0.0788 -5.3993 -3.1482 14 6 0.1585 -6.5196 -3.8931 15 8 1.0079 -7.3532 -3.6479 16 6 -0.7896 -6.7348 -5.0110 17 6 -0.7068 -7.8921 -5.7895 18 6 -1.6221 -8.0475 -6.8217 19 6 -2.5537 -7.0419 -7.0239 20 7 -2.5581 -5.9762 -6.2421 21 7 -1.7193 -5.8263 -5.2822 22 6 0.4505 -2.2892 1.5538 23 6 1.1629 -2.6364 2.8357 24 6 1.1408 -3.9350 3.3216 25 6 1.8058 -4.2072 4.5071 26 6 2.4684 -3.1835 5.1581 27 7 2.4727 -1.9612 4.6636 28 6 1.8510 -1.6660 3.5386 29 1 -0.4850 0.8401 -0.0004 30 1 2.7092 -3.6151 -0.5959 31 1 1.5851 -4.4337 0.5151 32 1 -0.3089 -3.8613 -0.9795 33 1 0.8153 -3.0427 -2.0906 34 1 2.0354 -5.1743 -2.4279 35 1 0.9116 -5.9937 -1.3170 36 1 -0.5995 -4.7341 -3.3437 37 1 0.0429 -8.6439 -5.5918 38 1 -1.6054 -8.9245 -7.4517 39 1 -3.2772 -7.1291 -7.8209 40 1 -0.3565 -3.0016 1.3823 41 1 0.0373 -1.2833 1.6288 42 1 0.6145 -4.7149 2.7914 43 1 1.8060 -5.2063 4.9171 44 1 2.9892 -3.3874 6.0820 45 1 1.8763 -0.6531 3.1648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230876399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = 76.678274 kcal Electronic energy + Delta-G solvation = -27974.284811 eV Core-core repulsion = 23992.990237 eV Total energy + Delta-G solvation = -3981.294574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45191 -39.50549 -39.39276 -36.47947 -35.07521 -33.56360 -33.15569 -32.21080 -31.95000 -31.14724 -29.63963 -26.41724 -25.86496 -25.05969 -24.67457 -22.87689 -22.57062 -21.40958 -21.10095 -20.08487 -18.40274 -17.66032 -17.02098 -16.95227 -16.41685 -15.89360 -15.82418 -15.60607 -15.03606 -14.97312 -14.79493 -14.34941 -14.15233 -13.98787 -13.66810 -13.49310 -13.30655 -12.92540 -12.86936 -12.50332 -12.00655 -11.86481 -11.76269 -11.31207 -11.19880 -11.03226 -10.75771 -10.71208 -10.56717 -10.44142 -10.30092 -10.17291 -10.11646 -10.05694 -9.87634 -9.22694 -9.03083 -8.92026 -8.58783 -8.29783 -6.77651 -5.95154 -3.47517 0.11499 0.36328 1.74015 1.87833 2.46158 2.91150 3.30615 3.37216 3.41051 3.43962 3.60134 4.04702 4.24415 4.30328 4.34907 4.46544 4.58071 4.74533 5.02589 5.18577 5.22591 5.29297 5.32101 5.45738 5.49002 5.53306 5.66794 5.67378 5.76311 5.78303 5.91357 6.08045 6.12016 6.15189 6.38503 6.41149 6.52254 6.58440 6.71510 6.81902 7.01578 7.04896 7.32247 7.42993 7.49405 7.71793 8.00888 8.21186 8.36434 8.57964 9.02930 9.64855 10.22042 11.07150 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.002427 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.373466 B =11533.886814 C =13230.151543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.015 3.985 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.260 4.260 8 H 0.063 0.937 9 N -0.572 5.572 10 C 0.154 3.846 11 C -0.147 4.147 12 C 0.117 3.883 13 N -0.698 5.698 14 C 0.570 3.430 15 O -0.535 6.535 16 C 0.028 3.972 17 C -0.067 4.067 18 C -0.123 4.123 19 C 0.052 3.948 20 N -0.239 5.239 21 N -0.208 5.208 22 C 0.180 3.820 23 C -0.122 4.122 24 C -0.085 4.085 25 C -0.181 4.181 26 C 0.068 3.932 27 N -0.492 5.492 28 C 0.113 3.887 29 H 0.257 0.743 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.414 0.586 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.178 0.822 40 H 0.035 0.965 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.142 0.858 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 -15.681 -7.795 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.186 4.186 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.390 4.390 8 H 0.081 0.919 9 N -0.290 5.290 10 C 0.027 3.973 11 C -0.187 4.187 12 C -0.006 4.006 13 N -0.349 5.349 14 C 0.352 3.648 15 O -0.411 6.411 16 C -0.119 4.119 17 C -0.096 4.096 18 C -0.152 4.152 19 C -0.110 4.110 20 N -0.082 5.082 21 N -0.055 5.055 22 C 0.054 3.946 23 C -0.127 4.127 24 C -0.112 4.112 25 C -0.201 4.201 26 C -0.089 4.089 27 N -0.201 5.201 28 C -0.044 4.044 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.250 0.750 37 H 0.181 0.819 38 H 0.176 0.824 39 H 0.195 0.805 40 H 0.054 0.946 41 H 0.125 0.875 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.159 0.841 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.786 -13.971 -6.778 15.983 hybrid contribution 0.216 -1.021 -1.077 1.500 sum -3.570 -14.992 -7.855 17.297 Atomic orbital electron populations 1.69998 1.05495 1.26021 1.50742 1.25135 0.95012 0.98745 0.99676 0.86395 0.79999 0.83914 0.77573 1.19950 1.21521 1.21108 1.19106 0.94400 0.85560 1.39924 0.91914 1.43739 1.51115 1.03159 1.30997 1.20791 0.96110 0.88587 0.91855 1.22468 1.01970 0.94032 1.00252 1.21645 0.92498 0.99172 0.87311 1.46067 1.35770 1.20953 1.32069 1.17588 0.83160 0.82713 0.81354 1.90795 1.36135 1.44381 1.69810 1.22985 0.97058 0.93875 0.97957 1.22470 0.97780 0.97016 0.92376 1.22470 0.94480 1.00643 0.97610 1.24547 0.97423 0.90649 0.98429 1.73190 1.15322 1.19507 1.00189 1.73281 0.99278 1.23580 1.09365 1.19946 0.89750 1.03583 0.81351 1.22296 0.98569 0.93362 0.98475 1.21482 0.97884 0.96646 0.95189 1.21978 1.00620 1.00160 0.97299 1.22487 0.98131 0.88797 0.99469 1.67636 1.18050 1.21330 1.13101 1.22684 0.92112 1.00196 0.89436 0.93306 0.93470 0.94488 0.91895 0.90654 0.91362 0.91614 0.74995 0.81948 0.82439 0.80487 0.94622 0.87455 0.85940 0.86048 0.84058 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.21 11.46 55.49 0.64 -22.58 16 2 C 0.02 0.39 4.90 -17.43 -0.09 0.30 16 3 Si 0.89 20.48 29.61 -169.99 -5.03 15.45 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.51 9.47 -15.06 -0.14 -6.66 16 8 H 0.06 1.61 7.92 -52.48 -0.42 1.20 16 9 N -0.57 -12.74 2.42 -174.62 -0.42 -13.16 16 10 C 0.15 2.88 5.68 -4.05 -0.02 2.86 16 11 C -0.15 -2.49 5.65 -26.73 -0.15 -2.64 16 12 C 0.12 1.71 5.67 -4.04 -0.02 1.69 16 13 N -0.70 -9.81 5.55 -61.15 -0.34 -10.15 16 14 C 0.57 8.07 7.82 -12.19 -0.10 7.97 16 15 O -0.53 -8.69 16.39 5.35 0.09 -8.60 16 16 C 0.03 0.33 6.83 -82.83 -0.57 -0.23 16 17 C -0.07 -0.59 9.73 -38.81 -0.38 -0.97 16 18 C -0.12 -0.74 10.20 -39.24 -0.40 -1.14 16 19 C 0.05 0.38 11.31 -17.28 -0.20 0.18 16 20 N -0.24 -2.77 11.51 30.58 0.35 -2.41 16 21 N -0.21 -2.70 10.75 33.32 0.36 -2.35 16 22 C 0.18 3.84 5.38 -5.19 -0.03 3.81 16 23 C -0.12 -2.37 5.47 -104.48 -0.57 -2.94 16 24 C -0.09 -1.41 9.77 -39.28 -0.38 -1.80 16 25 C -0.18 -2.70 10.11 -39.44 -0.40 -3.10 16 26 C 0.07 1.10 11.18 -17.55 -0.20 0.91 16 27 N -0.49 -9.46 10.36 -13.25 -0.14 -9.59 16 28 C 0.11 2.30 10.88 -17.55 -0.19 2.10 16 29 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.05 0.89 8.04 -51.93 -0.42 0.48 16 31 H 0.04 0.64 8.01 -51.93 -0.42 0.22 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.41 5.63 7.83 -40.82 -0.32 5.31 16 37 H 0.16 1.23 7.72 -52.49 -0.41 0.82 16 38 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 39 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 41 H 0.11 2.60 5.48 -51.93 -0.28 2.32 16 42 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.15 3.22 8.06 -52.49 -0.42 2.80 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -30.70 391.69 -8.46 -39.16 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.04 Total: 7.98 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -3.83 Total: 0.35 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.45 Total: -60.24 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.70 -8.46 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230876399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.839 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds