Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.47100 * 270.00148 * 3 2 1 5 5 H 1.48503 * 109.47223 * 29.99980 * 3 2 1 6 6 H 1.48498 * 109.47296 * 150.00041 * 3 2 1 7 7 C 1.37875 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99641 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00220 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47051 * 59.99970 * 9 7 2 11 11 N 1.46900 * 109.46959 * 300.00145 * 9 7 2 12 12 C 1.50702 * 109.47358 * 180.02562 * 9 7 2 13 13 N 1.30955 * 126.42229 * 255.25806 * 12 9 7 14 14 C 1.35276 * 105.57934 * 180.12039 * 13 12 9 15 15 C 1.48207 * 126.42644 * 179.90093 * 14 13 12 16 16 N 1.32581 * 119.83785 * 5.85238 * 15 14 13 17 17 C 1.31629 * 121.78846 * 180.02562 * 16 15 14 18 18 C 1.38591 * 121.25662 * 359.97438 * 17 16 15 19 19 C 1.38263 * 119.51496 * 359.76201 * 18 17 16 20 20 C 1.40098 * 118.36030 * 0.48283 * 19 18 17 21 21 C 1.47250 * 120.62315 * 179.77435 * 20 19 18 22 22 C 1.33879 * 119.99625 * 353.79804 * 21 20 19 23 23 N 1.38151 * 119.99785 * 179.97438 * 22 21 20 24 24 C 1.47020 * 125.64415 * 359.69039 * 23 22 21 25 25 C 1.54324 * 107.26893 * 181.32637 * 24 23 22 26 26 C 1.55156 * 102.94327 * 22.18960 * 25 24 23 27 27 C 1.47420 * 125.64795 * 180.02562 * 23 22 21 28 28 N 1.30852 * 107.15100 * 359.63499 * 14 13 12 29 29 O 1.21293 * 110.07469 * 0.22846 * 28 14 13 30 30 H 0.97000 * 120.00140 * 359.97438 * 1 2 3 31 31 H 1.00904 * 110.99840 * 300.00224 * 11 9 7 32 32 H 1.00897 * 111.00223 * 63.95028 * 11 9 7 33 33 H 1.08001 * 119.37410 * 179.97438 * 17 16 15 34 34 H 1.07999 * 120.24183 * 180.02562 * 18 17 16 35 35 H 1.08007 * 120.81484 * 180.22884 * 19 18 17 36 36 H 1.07992 * 120.00068 * 173.79724 * 21 20 19 37 37 H 1.07996 * 120.00787 * 359.97438 * 22 21 20 38 38 H 1.09001 * 109.88539 * 300.73806 * 24 23 22 39 39 H 1.09001 * 109.88407 * 61.91218 * 24 23 22 40 40 H 1.09003 * 110.72208 * 263.83204 * 25 24 23 41 41 H 1.09000 * 110.72368 * 140.55944 * 25 24 23 42 42 H 1.08997 * 111.00564 * 206.42283 * 26 25 24 43 43 H 1.09003 * 110.99726 * 82.57722 * 26 25 24 44 44 H 1.08997 * 110.36740 * 274.44363 * 27 23 22 45 45 H 1.08998 * 110.37081 * 36.76956 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 7 2.5319 -4.4098 -1.0196 14 6 3.4445 -5.2928 -0.5534 15 6 4.0974 -6.3749 -1.3276 16 7 3.8870 -6.4714 -2.6330 17 6 4.4466 -7.4172 -3.3575 18 6 5.2861 -8.3598 -2.7852 19 6 5.5466 -8.3054 -1.4284 20 6 4.9372 -7.2945 -0.6737 21 6 5.1759 -7.1932 0.7758 22 6 5.8796 -8.1418 1.4061 23 7 6.1040 -8.0465 2.7660 24 6 5.6355 -6.9591 3.6375 25 6 6.1494 -7.2594 5.0613 26 6 7.3545 -8.2023 4.8041 27 6 6.8587 -9.0148 3.5821 28 7 3.6471 -5.0088 0.7077 29 8 2.9583 -4.0667 1.0382 30 1 -0.4850 0.8400 0.0004 31 1 0.9654 -2.5259 2.0381 32 1 -0.3003 -1.8578 1.1912 33 1 4.2478 -7.4596 -4.4183 34 1 5.7369 -9.1285 -3.3952 35 1 6.2004 -9.0270 -0.9612 36 1 4.7833 -6.3538 1.3303 37 1 6.2719 -8.9815 0.8517 38 1 6.0378 -6.0070 3.2913 39 1 4.5460 -6.9261 3.6360 40 1 5.3832 -7.7646 5.6494 41 1 6.4747 -6.3437 5.5551 42 1 7.5312 -8.8530 5.6605 43 1 8.2503 -7.6327 4.5568 44 1 6.2078 -9.8269 3.9057 45 1 7.7052 -9.4074 3.0189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248226154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = 132.992601 kcal Electronic energy + Delta-G solvation = -28769.708090 eV Core-core repulsion = 24790.855488 eV Total energy + Delta-G solvation = -3978.852601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.63358 -40.02779 -39.07341 -35.36748 -35.01221 -34.79033 -32.42482 -32.26095 -31.35116 -30.11069 -29.43415 -28.14694 -26.41774 -24.70909 -24.49261 -23.49163 -22.22806 -22.03320 -21.58470 -20.24182 -19.17448 -17.53107 -17.31061 -17.25780 -16.52958 -16.38953 -15.94475 -15.73253 -15.25465 -15.12726 -14.35417 -14.20591 -13.96256 -13.79091 -13.73741 -13.43586 -13.23930 -13.00124 -12.76159 -12.45676 -12.29955 -11.94625 -11.68000 -11.57595 -11.41945 -11.23491 -11.16301 -11.09299 -11.00039 -10.92550 -10.88258 -10.34636 -10.25899 -9.99441 -9.79132 -9.49509 -9.32332 -8.82895 -8.67781 -7.48807 -7.05721 -6.29488 -4.45958 0.70928 1.16948 2.15215 2.71527 2.96261 3.11589 3.18765 3.25663 3.30358 3.71631 3.91091 4.16134 4.19802 4.22741 4.30479 4.46304 4.57526 4.69904 4.91028 4.96137 4.98010 5.04462 5.05105 5.09656 5.20942 5.24796 5.37275 5.41022 5.51776 5.62562 5.69138 5.72006 5.87167 5.91201 5.99005 6.08393 6.18964 6.37450 6.56314 6.67393 6.71603 6.93013 7.04797 7.25968 7.54441 7.57079 7.71593 8.11837 8.37077 8.64985 8.87893 9.00297 9.26166 10.71143 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009597 B = 0.003185 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.838918 B = 8788.114176 C =10949.783162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.555 4.555 8 H 0.061 0.939 9 C 0.296 3.704 10 H 0.087 0.913 11 N -0.848 5.848 12 C 0.249 3.751 13 N -0.478 5.478 14 C 0.212 3.788 15 C 0.192 3.808 16 N -0.436 5.436 17 C 0.078 3.922 18 C -0.153 4.153 19 C -0.106 4.106 20 C -0.017 4.017 21 C -0.273 4.273 22 C 0.170 3.830 23 N -0.628 5.628 24 C 0.107 3.893 25 C -0.132 4.132 26 C -0.134 4.134 27 C 0.109 3.891 28 N -0.387 5.387 29 O 0.068 5.932 30 H 0.271 0.729 31 H 0.322 0.678 32 H 0.368 0.632 33 H 0.158 0.842 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.734 -18.598 6.158 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.596 4.596 8 H 0.079 0.921 9 C 0.184 3.816 10 H 0.105 0.895 11 N -0.381 5.381 12 C 0.030 3.970 13 N -0.211 5.211 14 C -0.059 4.059 15 C 0.054 3.946 16 N -0.145 5.145 17 C -0.082 4.082 18 C -0.173 4.173 19 C -0.132 4.132 20 C -0.022 4.022 21 C -0.302 4.302 22 C 0.049 3.951 23 N -0.337 5.337 24 C -0.016 4.016 25 C -0.170 4.170 26 C -0.173 4.173 27 C -0.014 4.014 28 N -0.100 5.100 29 O 0.012 5.988 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.187 0.813 33 H 0.175 0.825 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.151 0.849 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.318 -19.166 5.676 24.019 hybrid contribution 1.314 1.343 0.353 1.912 sum 14.632 -17.823 6.029 23.835 Atomic orbital electron populations 1.69712 1.05882 1.28012 1.48948 1.24940 0.95051 0.99527 0.93488 0.86321 0.79714 0.81927 0.78541 1.20198 1.20811 1.19651 1.21580 0.93914 0.90052 1.54042 0.92089 1.17765 0.86693 0.83078 0.94077 0.89534 1.59386 1.18343 1.56763 1.03588 1.29929 0.92410 0.95233 0.79469 1.72156 1.14866 1.06190 1.27894 1.23226 0.96860 0.97319 0.88448 1.17966 0.95616 0.92155 0.88880 1.67394 1.20322 1.21239 1.05536 1.22680 0.94679 0.90845 1.00015 1.22109 0.99473 1.00254 0.95506 1.21508 0.99872 0.97953 0.93885 1.19498 0.94704 0.93759 0.94236 1.21613 1.11424 1.04831 0.92288 1.20960 0.94858 0.97404 0.81927 1.46850 1.57286 1.24723 1.04855 1.21944 0.99697 0.90778 0.89175 1.22633 0.97821 1.00491 0.96092 1.22769 0.98387 0.98500 0.97602 1.22216 0.95114 0.92009 0.92046 1.74627 1.15845 1.04552 1.14974 1.85222 1.40590 1.34177 1.38785 0.91856 0.86869 0.81309 0.82503 0.84768 0.84909 0.82707 0.84901 0.91506 0.91448 0.90607 0.89912 0.89988 0.90617 0.92065 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.28 11.54 55.43 0.64 -22.64 16 2 C 0.07 1.93 5.38 -17.82 -0.10 1.83 16 3 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.56 -14.72 8.71 -34.44 -0.30 -15.02 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 9 C 0.30 7.43 3.26 -70.02 -0.23 7.21 16 10 H 0.09 2.36 8.14 -51.93 -0.42 1.94 16 11 N -0.85 -19.59 9.18 -6.65 -0.06 -19.66 16 12 C 0.25 6.01 7.23 -12.98 -0.09 5.91 16 13 N -0.48 -11.72 11.57 -9.88 -0.11 -11.83 16 14 C 0.21 4.72 7.80 -156.09 -1.22 3.50 16 15 C 0.19 3.74 6.79 -82.54 -0.56 3.18 16 16 N -0.44 -8.17 10.28 -9.45 -0.10 -8.26 16 17 C 0.08 1.06 11.16 -17.51 -0.20 0.87 16 18 C -0.15 -1.68 10.09 -39.44 -0.40 -2.08 16 19 C -0.11 -1.26 9.49 -38.87 -0.37 -1.63 16 20 C -0.02 -0.27 5.90 -104.63 -0.62 -0.88 16 21 C -0.27 -4.13 8.80 -37.45 -0.33 -4.46 16 22 C 0.17 1.98 10.22 -16.23 -0.17 1.81 16 23 N -0.63 -6.59 3.43 -171.22 -0.59 -7.18 16 24 C 0.11 1.15 5.99 -3.06 -0.02 1.13 16 25 C -0.13 -0.99 6.95 -24.90 -0.17 -1.16 16 26 C -0.13 -0.83 7.08 -24.59 -0.17 -1.00 16 27 C 0.11 0.79 7.24 -2.54 -0.02 0.77 16 28 N -0.39 -8.26 8.75 30.98 0.27 -7.99 16 29 O 0.07 1.53 11.27 18.02 0.20 1.73 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.32 7.03 8.96 -39.29 -0.35 6.68 16 32 H 0.37 8.84 7.08 -39.29 -0.28 8.56 16 33 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 1.11 6.34 -52.48 -0.33 0.78 16 36 H 0.16 2.71 3.94 -52.49 -0.21 2.50 16 37 H 0.13 1.16 6.16 -52.49 -0.32 0.84 16 38 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -30.72 376.91 -9.73 -40.45 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -5.68 Total: 14.33 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -4.96 Total: -0.02 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: 0.05 Total: -77.56 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.20 Total: 1.73 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.72 -9.73 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248226154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.445 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds