Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99927 * 2 1 4 4 H 1.48505 * 109.46951 * 270.00126 * 3 2 1 5 5 H 1.48501 * 109.47194 * 30.00271 * 3 2 1 6 6 H 1.48498 * 109.47115 * 150.00182 * 3 2 1 7 7 C 1.37874 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99575 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00394 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53655 * 59.90212 * 9 7 2 11 11 C 1.53122 * 109.50372 * 299.80690 * 9 7 2 12 12 C 1.53119 * 109.16097 * 182.40340 * 11 9 7 13 13 C 1.53031 * 109.28162 * 57.65279 * 12 11 9 14 14 N 1.46845 * 109.52454 * 300.82214 * 13 12 11 15 15 C 1.46898 * 111.00403 * 185.83747 * 14 13 12 16 16 C 1.53003 * 109.46952 * 51.93834 * 15 14 13 17 17 H 1.08995 * 109.47336 * 298.78097 * 16 15 14 18 18 O 1.42901 * 109.46971 * 58.77935 * 16 15 14 19 19 C 1.53001 * 109.46948 * 178.77601 * 16 15 14 20 20 O 1.42904 * 109.46858 * 175.00254 * 19 16 15 21 21 C 1.35995 * 116.99730 * 180.02562 * 20 19 16 22 22 C 1.38637 * 120.04160 * 0.02562 * 21 20 19 23 23 C 1.38191 * 119.99525 * 179.97438 * 22 21 20 24 24 C 1.38449 * 120.06899 * 359.72113 * 23 22 21 25 25 F 1.35103 * 119.96321 * 180.30233 * 24 23 22 26 26 C 1.38440 * 120.07828 * 0.55180 * 24 23 22 27 27 C 1.38335 * 120.00162 * 359.45507 * 26 24 23 28 28 F 1.35102 * 120.03739 * 180.25323 * 27 26 24 29 29 C 1.46850 * 111.20108 * 61.73808 * 14 13 12 30 30 H 0.97001 * 119.99775 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.51872 * 302.30788 * 11 9 7 32 32 H 1.08998 * 109.52171 * 62.43335 * 11 9 7 33 33 H 1.09006 * 109.49850 * 177.59547 * 12 11 9 34 34 H 1.08999 * 109.50320 * 297.71034 * 12 11 9 35 35 H 1.08994 * 109.46735 * 180.80261 * 13 12 11 36 36 H 1.09005 * 109.46500 * 60.83286 * 13 12 11 37 37 H 1.09005 * 109.47230 * 291.94444 * 15 14 13 38 38 H 1.08997 * 109.47300 * 171.94230 * 15 14 13 39 39 H 0.96706 * 113.99811 * 59.99426 * 18 16 15 40 40 H 1.08993 * 109.47265 * 55.00343 * 19 16 15 41 41 H 1.09003 * 109.47263 * 294.99790 * 19 16 15 42 42 H 1.08001 * 120.00080 * 359.95242 * 22 21 20 43 43 H 1.08007 * 119.96019 * 180.02562 * 23 22 21 44 44 H 1.07999 * 120.00125 * 179.72217 * 26 24 23 45 45 H 1.09001 * 109.46155 * 58.27233 * 29 14 13 46 46 H 1.08994 * 109.46594 * 178.25215 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6224 -2.5570 -0.8890 11 6 0.3746 -2.5834 1.2522 12 6 -0.3409 -3.9370 1.2747 13 6 0.6990 -5.0590 1.2372 14 7 1.5112 -4.9348 0.0201 15 6 2.4283 -6.0739 -0.1194 16 6 1.6412 -7.3802 0.0033 17 1 1.1736 -7.4317 0.9864 18 8 0.6318 -7.4248 -1.0072 19 6 2.5914 -8.5665 -0.1725 20 8 1.8802 -9.7845 0.0571 21 6 2.5844 -10.9420 -0.0596 22 6 3.9310 -10.9051 -0.3875 23 6 4.6458 -12.0819 -0.5053 24 6 4.0200 -13.2981 -0.2906 25 9 4.7224 -14.4470 -0.4004 26 6 2.6742 -13.3387 0.0314 27 6 1.9556 -12.1626 0.1500 28 9 0.6434 -12.2011 0.4693 29 6 2.2449 -3.6629 -0.0012 30 1 -0.4850 0.8401 0.0004 31 1 0.9988 -2.4865 2.1405 32 1 -0.3626 -1.7808 1.2356 33 1 -0.9334 -4.0202 2.1859 34 1 -0.9947 -4.0175 0.4063 35 1 0.1923 -6.0240 1.2387 36 1 1.3438 -4.9862 2.1130 37 1 3.1840 -6.0301 0.6649 38 1 2.9137 -6.0322 -1.0944 39 1 0.9766 -7.3829 -1.9098 40 1 3.4110 -8.4843 0.5413 41 1 2.9911 -8.5647 -1.1866 42 1 4.4211 -9.9568 -0.5512 43 1 5.6949 -12.0525 -0.7604 44 1 2.1863 -14.2883 0.1942 45 1 2.8823 -3.5965 0.8805 46 1 2.8608 -3.6139 -0.8991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250856684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = -150.596132 kcal Electronic energy + Delta-G solvation = -29229.016176 eV Core-core repulsion = 24754.884306 eV Total energy + Delta-G solvation = -4474.131869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.35683 -49.21547 -40.53307 -38.90590 -37.76490 -36.50619 -33.67439 -31.95740 -31.45227 -30.74368 -29.94188 -29.23958 -26.08131 -25.02807 -23.85567 -23.02082 -22.32647 -21.84124 -20.61813 -18.93350 -18.64691 -18.25560 -17.85871 -16.97594 -16.70068 -16.25294 -16.20223 -16.05357 -15.65119 -15.20818 -15.04015 -14.84944 -14.82687 -14.80597 -14.28790 -14.03265 -13.54714 -13.36882 -13.01857 -12.80370 -12.70989 -12.48374 -12.33636 -12.27229 -11.87228 -11.75070 -11.44591 -11.31593 -11.01566 -10.95960 -10.71261 -10.58072 -10.14445 -10.05209 -9.82640 -9.62742 -9.46378 -9.04373 -8.71429 -8.58773 -8.31244 -7.71640 -5.98493 -4.05095 0.42490 0.54394 2.50105 2.84722 3.29330 3.36319 3.38541 3.44516 3.85529 4.00564 4.16258 4.28066 4.35707 4.44149 4.48787 4.62390 4.72451 4.78471 4.99483 5.03532 5.18438 5.24771 5.31535 5.38264 5.47246 5.50530 5.56791 5.73328 5.79096 5.90955 6.07422 6.08144 6.25339 6.36014 6.48584 6.72331 6.75049 6.78624 6.94178 7.21558 7.36745 7.60881 7.64695 7.73636 7.79023 8.06982 8.16795 8.46102 8.98923 9.59209 11.07403 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.001859 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.967356 B =15054.732148 C =15763.914398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.058 3.942 14 N -0.525 5.525 15 C 0.027 3.973 16 C 0.111 3.889 17 H 0.111 0.889 18 O -0.534 6.534 19 C 0.024 3.976 20 O -0.290 6.290 21 C 0.095 3.905 22 C -0.157 4.157 23 C -0.120 4.120 24 C 0.087 3.913 25 F -0.133 7.133 26 C -0.153 4.153 27 C 0.100 3.900 28 F -0.121 7.121 29 C 0.068 3.932 30 H 0.260 0.740 31 H 0.028 0.972 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.373 0.627 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.019 0.981 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 -25.038 -0.331 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.070 4.070 14 N -0.250 5.250 15 C -0.102 4.102 16 C 0.051 3.949 17 H 0.128 0.872 18 O -0.338 6.338 19 C -0.052 4.052 20 O -0.203 6.203 21 C 0.047 3.953 22 C -0.176 4.176 23 C -0.139 4.139 24 C 0.067 3.933 25 F -0.112 7.112 26 C -0.172 4.172 27 C 0.079 3.921 28 F -0.099 7.099 29 C -0.059 4.059 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.220 0.780 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.173 0.827 45 H 0.037 0.963 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.951 -24.940 -0.148 25.891 hybrid contribution 1.687 0.785 0.276 1.881 sum 8.637 -24.156 0.128 25.654 Atomic orbital electron populations 1.69894 1.05821 1.26346 1.50471 1.24940 0.94836 0.98953 0.95141 0.86630 0.79812 0.83665 0.78060 1.20709 1.21264 1.20072 1.21127 0.92756 0.90679 1.50908 0.92912 1.18654 0.92585 0.90117 0.94967 0.94687 1.21659 1.00025 0.94864 0.98358 1.21650 0.97199 0.96206 1.00330 1.22146 0.95727 0.99479 0.89664 1.61968 1.23314 1.01421 1.38285 1.22647 0.94652 0.91241 1.01668 1.22013 0.88748 0.89610 0.94526 0.87183 1.86678 1.33631 1.96216 1.17303 1.23829 0.96437 0.83123 1.01795 1.86268 1.37437 1.11791 1.84775 1.19096 0.91166 0.86348 0.98654 1.21053 0.92287 0.99844 1.04381 1.21023 1.01454 0.90286 1.01134 1.17143 0.89389 0.82159 1.04596 1.91530 1.78287 1.47566 1.93820 1.20910 0.93454 0.98572 1.04310 1.16556 0.79313 0.90891 1.05301 1.91565 1.31195 1.97028 1.90143 1.22347 0.96478 0.88427 0.98660 0.93024 0.95270 0.89112 0.93559 0.91905 0.91572 0.96180 0.94495 0.90481 0.78040 0.90750 0.91046 0.83310 0.83634 0.82743 0.96314 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 11.36 55.43 0.63 -24.51 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.92 8.56 -34.44 -0.29 -14.21 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.61 5.03 -26.61 -0.13 -2.74 16 12 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 13 C 0.06 1.00 5.04 -3.84 -0.02 0.98 16 14 N -0.53 -9.12 4.61 -234.67 -1.08 -10.20 16 15 C 0.03 0.34 4.79 -3.82 -0.02 0.32 16 16 C 0.11 1.26 2.66 -26.73 -0.07 1.19 16 17 H 0.11 1.39 6.27 -51.93 -0.33 1.06 16 18 O -0.53 -7.01 13.15 -40.09 -0.53 -7.54 16 19 C 0.02 0.21 4.37 37.16 0.16 0.37 16 20 O -0.29 -3.21 9.97 -24.58 -0.24 -3.45 16 21 C 0.09 0.91 6.69 -39.19 -0.26 0.64 16 22 C -0.16 -1.10 9.04 -39.45 -0.36 -1.46 16 23 C -0.12 -0.78 10.02 -39.52 -0.40 -1.18 16 24 C 0.09 0.67 7.30 -39.43 -0.29 0.38 16 25 F -0.13 -1.10 17.27 2.25 0.04 -1.06 16 26 C -0.15 -1.21 10.00 -39.47 -0.39 -1.61 16 27 C 0.10 0.98 7.31 -39.30 -0.29 0.69 16 28 F -0.12 -1.41 17.11 2.25 0.04 -1.37 16 29 C 0.07 1.37 4.68 -3.83 -0.02 1.35 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.06 5.87 -51.93 -0.30 0.75 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.37 3.63 9.05 45.56 0.41 4.04 16 40 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 41 H 0.07 0.47 7.66 -51.93 -0.40 0.07 16 42 H 0.15 0.73 6.30 -52.49 -0.33 0.40 16 43 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 44 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -30.67 377.85 -9.17 -39.84 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.85 Total: 1.54 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -2.84 Total: -14.93 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.45 Total: -34.71 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.77 Total: -10.99 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.08 Total: -2.43 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.67 -9.17 -39.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250856684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.756 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds