Wall clock time and date at job start Sat Apr 11 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99920 * 2 1 4 4 H 1.48498 * 109.47109 * 240.00106 * 3 2 1 5 5 H 1.48491 * 109.47296 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46957 * 120.00184 * 3 2 1 7 7 C 1.37878 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00175 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99750 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.53808 * 60.09745 * 9 7 2 11 11 C 1.53121 * 109.50234 * 300.00370 * 9 7 2 12 12 C 1.53123 * 109.16081 * 182.40554 * 11 9 7 13 13 C 1.53037 * 109.27845 * 57.65358 * 12 11 9 14 14 N 1.46855 * 109.51921 * 300.81914 * 13 12 11 15 15 C 1.46903 * 110.99631 * 185.83842 * 14 13 12 16 16 C 1.52998 * 109.47025 * 164.06260 * 15 14 13 17 17 H 1.08999 * 109.46754 * 58.38968 * 16 15 14 18 18 O 1.42896 * 109.47345 * 298.39095 * 16 15 14 19 19 C 1.52995 * 109.47135 * 178.38676 * 16 15 14 20 20 O 1.42904 * 109.47154 * 185.00147 * 19 16 15 21 21 C 1.36007 * 117.00037 * 179.97438 * 20 19 16 22 22 C 1.38633 * 120.03602 * 359.72907 * 21 20 19 23 23 C 1.38191 * 119.99386 * 179.71849 * 22 21 20 24 24 C 1.38455 * 120.06312 * 0.57376 * 23 22 21 25 25 F 1.35105 * 119.96072 * 179.70067 * 24 23 22 26 26 C 1.38436 * 120.08010 * 359.68403 * 24 23 22 27 27 C 1.38335 * 120.00420 * 0.03662 * 26 24 23 28 28 F 1.35102 * 120.03588 * 180.02562 * 27 26 24 29 29 C 1.46845 * 111.19766 * 61.74870 * 14 13 12 30 30 H 0.96999 * 119.99901 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.52730 * 62.49732 * 11 9 7 32 32 H 1.09006 * 109.57603 * 302.34096 * 11 9 7 33 33 H 1.09005 * 109.50068 * 297.71286 * 12 11 9 34 34 H 1.08997 * 109.50313 * 177.59220 * 12 11 9 35 35 H 1.08996 * 109.46213 * 180.80599 * 13 12 11 36 36 H 1.08997 * 109.45557 * 60.82644 * 13 12 11 37 37 H 1.08995 * 109.47498 * 284.06917 * 15 14 13 38 38 H 1.09001 * 109.46864 * 44.06820 * 15 14 13 39 39 H 0.96705 * 114.00025 * 299.99444 * 18 16 15 40 40 H 1.09007 * 109.47316 * 305.00231 * 19 16 15 41 41 H 1.09005 * 109.47313 * 65.00214 * 19 16 15 42 42 H 1.08000 * 120.00458 * 0.02562 * 22 21 20 43 43 H 1.07997 * 119.96901 * 180.30076 * 23 22 21 44 44 H 1.08001 * 120.00006 * 180.02562 * 26 24 23 45 45 H 1.09000 * 109.46545 * 58.26924 * 29 14 13 46 46 H 1.08993 * 109.46339 * 178.23837 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6250 -2.5586 -0.8908 11 6 0.3709 -2.5812 1.2497 12 6 -0.3448 -3.9347 1.2725 13 6 0.6953 -5.0569 1.2400 14 7 1.5111 -4.9347 0.0250 15 6 2.4286 -6.0741 -0.1097 16 6 2.9645 -6.1307 -1.5416 17 1 3.4723 -5.1953 -1.7767 18 8 1.8781 -6.3242 -2.4495 19 6 3.9508 -7.2931 -1.6714 20 8 4.5388 -7.2757 -2.9737 21 6 5.4456 -8.2496 -3.2548 22 6 5.7659 -9.1974 -2.2952 23 6 6.6831 -10.1900 -2.5837 24 6 7.2916 -10.2321 -3.8266 25 9 8.1925 -11.1999 -4.1044 26 6 6.9779 -9.2839 -4.7852 27 6 6.0559 -8.2923 -4.5017 28 9 5.7488 -7.3670 -5.4369 29 6 2.2449 -3.6629 0.0038 30 1 -0.4850 0.8400 0.0004 31 1 -0.3670 -1.7792 1.2291 32 1 0.9915 -2.4823 2.1404 33 1 -0.9960 -4.0167 0.4022 34 1 -0.9399 -4.0164 2.1820 35 1 0.1886 -6.0219 1.2417 36 1 1.3374 -4.9822 2.1176 37 1 3.2600 -5.9552 0.5850 38 1 1.8960 -6.9980 0.1157 39 1 1.3800 -7.1393 -2.2989 40 1 4.7325 -7.1921 -0.9184 41 1 3.4234 -8.2355 -1.5234 42 1 5.2951 -9.1630 -1.3238 43 1 6.9287 -10.9310 -1.8374 44 1 7.4530 -9.3182 -5.7545 45 1 2.8797 -3.5951 0.8873 46 1 2.8636 -3.6155 -0.8922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250856685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:18 Heat of formation + Delta-G solvation = -151.991847 kcal Electronic energy + Delta-G solvation = -29377.263159 eV Core-core repulsion = 24903.070767 eV Total energy + Delta-G solvation = -4474.192392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.31240 -49.13697 -40.45913 -38.78314 -37.73870 -36.46930 -33.65671 -32.01938 -31.40124 -30.61383 -29.89582 -29.24246 -26.05458 -24.98210 -23.81888 -22.98517 -22.36678 -21.35028 -21.00598 -18.88300 -18.65174 -18.18883 -17.79127 -16.90299 -16.63307 -16.20375 -16.13772 -15.97622 -15.59088 -15.20285 -15.10495 -14.82946 -14.76997 -14.50598 -14.32393 -14.01997 -13.70332 -13.08275 -12.99434 -12.77398 -12.65304 -12.48272 -12.40059 -12.22472 -11.84465 -11.64722 -11.54904 -11.23827 -10.93601 -10.89503 -10.66674 -10.65160 -10.13065 -10.03418 -9.81811 -9.57310 -9.45748 -9.05707 -8.70033 -8.52601 -8.28635 -7.72095 -5.95591 -4.01825 0.47826 0.59977 2.57292 2.90112 3.33635 3.38394 3.40782 3.50213 3.90945 4.04908 4.20414 4.33665 4.40636 4.46740 4.53056 4.71372 4.80247 4.87520 5.06859 5.09254 5.21373 5.29546 5.34418 5.43768 5.52135 5.55195 5.56263 5.62135 5.78124 5.96581 6.02048 6.13902 6.20161 6.35059 6.47688 6.67672 6.73087 6.86372 6.95359 7.20379 7.36941 7.58142 7.70782 7.77950 7.81664 8.10360 8.18651 8.48783 9.01821 9.62306 11.10400 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.002187 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.425297 B =12801.774124 C =13861.504865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.036 0.964 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.065 3.935 14 N -0.527 5.527 15 C 0.028 3.972 16 C 0.116 3.884 17 H 0.113 0.887 18 O -0.530 6.530 19 C 0.025 3.975 20 O -0.288 6.288 21 C 0.095 3.905 22 C -0.158 4.158 23 C -0.121 4.121 24 C 0.086 3.914 25 F -0.134 7.134 26 C -0.153 4.153 27 C 0.100 3.900 28 F -0.120 7.120 29 C 0.066 3.934 30 H 0.260 0.740 31 H 0.091 0.909 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.022 0.978 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.366 0.634 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.155 0.845 45 H 0.018 0.982 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.299 -22.858 -2.416 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.054 0.946 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.063 4.063 14 N -0.251 5.251 15 C -0.101 4.101 16 C 0.055 3.945 17 H 0.131 0.869 18 O -0.333 6.333 19 C -0.051 4.051 20 O -0.200 6.200 21 C 0.048 3.952 22 C -0.177 4.177 23 C -0.140 4.140 24 C 0.066 3.934 25 F -0.113 7.113 26 C -0.172 4.172 27 C 0.080 3.920 28 F -0.098 7.098 29 C -0.061 4.061 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.212 0.788 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.173 0.827 45 H 0.036 0.964 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.973 -21.981 -3.211 24.351 hybrid contribution 1.099 0.196 1.029 1.518 sum 11.072 -21.785 -2.182 24.535 Atomic orbital electron populations 1.69877 1.05824 1.26426 1.50534 1.24928 0.94831 0.98924 0.95121 0.86693 0.79630 0.83325 0.78540 1.20259 1.21313 1.20440 1.21095 0.92739 0.90700 1.50891 0.92962 1.18642 0.92585 0.90143 0.94908 0.94587 1.21666 1.00084 0.94738 0.98433 1.21677 0.97148 0.96414 1.00282 1.22037 0.95523 0.98837 0.89866 1.61869 1.23493 1.01786 1.37949 1.22595 0.96229 0.96144 0.95111 1.21932 0.85814 0.97052 0.89658 0.86926 1.86759 1.44844 1.45877 1.55870 1.23825 0.97318 1.01185 0.82764 1.86300 1.52729 1.46497 1.34515 1.19115 0.92215 0.90780 0.93086 1.21032 1.01140 0.95553 0.99935 1.21003 0.97209 0.99871 0.95884 1.17136 0.92811 0.89067 0.94369 1.91527 1.64925 1.60684 1.94121 1.20912 0.99901 0.94814 1.01612 1.16568 0.99148 0.90855 0.85411 1.91575 1.91754 1.63320 1.63161 1.22388 0.96571 0.88537 0.98598 0.92999 0.89039 0.95249 0.91933 0.93502 0.92498 0.95974 0.94307 0.91036 0.78796 0.90795 0.91310 0.83388 0.83708 0.82742 0.96365 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 11.35 55.43 0.63 -24.79 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.14 8.56 -34.44 -0.29 -14.44 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 11 C -0.11 -2.60 5.02 -26.61 -0.13 -2.73 16 12 C -0.12 -2.23 6.09 -26.65 -0.16 -2.39 16 13 C 0.07 1.07 5.44 -3.83 -0.02 1.05 16 14 N -0.53 -9.12 4.51 -234.67 -1.06 -10.18 16 15 C 0.03 0.36 4.63 -3.82 -0.02 0.34 16 16 C 0.12 1.47 3.26 -26.73 -0.09 1.38 16 17 H 0.11 1.72 6.59 -51.93 -0.34 1.38 16 18 O -0.53 -7.62 13.20 -40.08 -0.53 -8.14 16 19 C 0.03 0.23 4.37 37.16 0.16 0.40 16 20 O -0.29 -3.51 9.97 -24.62 -0.25 -3.75 16 21 C 0.10 0.99 6.69 -39.20 -0.26 0.73 16 22 C -0.16 -1.19 9.04 -39.45 -0.36 -1.54 16 23 C -0.12 -0.84 10.02 -39.52 -0.40 -1.23 16 24 C 0.09 0.70 7.30 -39.43 -0.29 0.42 16 25 F -0.13 -1.16 17.27 2.25 0.04 -1.13 16 26 C -0.15 -1.32 10.00 -39.47 -0.39 -1.71 16 27 C 0.10 1.08 7.31 -39.31 -0.29 0.79 16 28 F -0.12 -1.53 17.11 2.25 0.04 -1.49 16 29 C 0.07 1.36 4.53 -3.83 -0.02 1.34 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.79 7.96 -51.93 -0.41 0.38 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.04 0.46 8.06 -51.93 -0.42 0.05 16 38 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 39 H 0.37 3.68 9.05 45.56 0.41 4.09 16 40 H 0.07 0.56 7.65 -51.92 -0.40 0.17 16 41 H 0.07 0.47 7.68 -51.93 -0.40 0.07 16 42 H 0.15 0.77 6.30 -52.49 -0.33 0.44 16 43 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 1.27 6.46 -51.93 -0.34 0.93 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -31.35 378.87 -9.17 -40.52 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.88 Total: 1.65 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.86 Total: -14.75 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.43 Total: -34.97 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.77 Total: -11.90 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.62 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.35 -9.17 -40.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250856685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.471 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds