Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99591 * 2 1 4 4 H 1.48504 * 109.47253 * 239.99830 * 3 2 1 5 5 H 1.48496 * 109.47558 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.46830 * 120.00356 * 3 2 1 7 7 C 1.37873 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00051 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.50677 * 300.07742 * 9 7 2 11 11 C 1.53118 * 109.50325 * 60.20020 * 9 7 2 12 12 C 1.53125 * 109.16095 * 177.59454 * 11 9 7 13 13 C 1.53041 * 109.27755 * 302.34706 * 12 11 9 14 14 N 1.46851 * 109.52494 * 59.17721 * 13 12 11 15 15 C 1.46893 * 110.99901 * 174.16169 * 14 13 12 16 16 C 1.53008 * 109.47200 * 294.21081 * 15 14 13 17 17 H 1.09001 * 109.46940 * 60.00346 * 16 15 14 18 18 O 1.42896 * 109.47074 * 300.00228 * 16 15 14 19 19 C 1.52996 * 109.47300 * 180.02562 * 16 15 14 20 20 O 1.42890 * 109.47251 * 185.00256 * 19 16 15 21 21 C 1.36003 * 117.00432 * 179.97438 * 20 19 16 22 22 C 1.38641 * 120.03164 * 0.02562 * 21 20 19 23 23 C 1.38195 * 119.98924 * 179.97438 * 22 21 20 24 24 C 1.38448 * 120.07155 * 0.02562 * 23 22 21 25 25 F 1.35101 * 119.96220 * 180.02562 * 24 23 22 26 26 C 1.38441 * 120.07777 * 0.02562 * 24 23 22 27 27 C 1.38340 * 120.00494 * 359.96207 * 26 24 23 28 28 F 1.35093 * 120.03733 * 180.02562 * 27 26 24 29 29 C 1.46846 * 111.19748 * 298.25907 * 14 13 12 30 30 H 0.96999 * 120.00160 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.52377 * 297.49728 * 11 9 7 32 32 H 1.08997 * 109.51972 * 57.62838 * 11 9 7 33 33 H 1.09000 * 109.50315 * 62.28504 * 12 11 9 34 34 H 1.08999 * 109.50373 * 182.40544 * 12 11 9 35 35 H 1.09001 * 109.46150 * 299.16191 * 13 12 11 36 36 H 1.08994 * 109.46345 * 179.19544 * 13 12 11 37 37 H 1.08996 * 109.47537 * 174.21125 * 15 14 13 38 38 H 1.09002 * 109.47694 * 54.20944 * 15 14 13 39 39 H 0.96709 * 114.00005 * 300.00121 * 18 16 15 40 40 H 1.08998 * 109.47175 * 64.99229 * 19 16 15 41 41 H 1.09003 * 109.46992 * 305.00055 * 19 16 15 42 42 H 1.07995 * 120.00846 * 0.24545 * 22 21 20 43 43 H 1.08000 * 119.96181 * 179.97438 * 23 22 21 44 44 H 1.07994 * 119.99990 * 179.97438 * 26 24 23 45 45 H 1.08998 * 109.46187 * 181.75903 * 29 14 13 46 46 H 1.09004 * 109.46214 * 301.73701 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6235 -2.5571 0.8888 11 6 0.3738 -2.5829 -1.2527 12 6 -0.3418 -3.9365 -1.2753 13 6 0.6983 -5.0585 -1.2389 14 7 1.5114 -4.9348 -0.0223 15 6 2.4285 -6.0738 0.1160 16 6 1.6213 -7.3543 0.3397 17 1 0.9610 -7.5208 -0.5114 18 8 0.8411 -7.2237 1.5297 19 6 2.5766 -8.5406 0.4844 20 8 1.8225 -9.7509 0.5766 21 6 2.5252 -10.9077 0.7098 22 6 3.9106 -10.8771 0.7513 23 6 4.6238 -12.0530 0.8872 24 6 3.9562 -13.2622 0.9815 25 9 4.6556 -14.4104 1.1149 26 6 2.5729 -13.2962 0.9394 27 6 1.8558 -12.1209 0.8036 28 9 0.5059 -12.1533 0.7629 29 6 2.2450 -3.6629 -0.0011 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3642 -1.7810 -1.2347 32 1 0.9972 -2.4845 -2.1414 33 1 -0.9949 -4.0174 -0.4064 34 1 -0.9349 -4.0194 -2.1861 35 1 1.3423 -4.9853 -2.1152 36 1 0.1916 -6.0236 -1.2405 37 1 3.0889 -5.9074 0.9670 38 1 3.0237 -6.1735 -0.7917 39 1 1.3646 -7.0731 2.3288 40 1 3.1762 -8.4164 1.3861 41 1 3.2328 -8.5868 -0.3847 42 1 4.4324 -9.9341 0.6818 43 1 5.7030 -12.0287 0.9191 44 1 2.0534 -14.2402 1.0126 45 1 2.8616 -3.6142 0.8964 46 1 2.8817 -3.5961 -0.8833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250856686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = -152.240644 kcal Electronic energy + Delta-G solvation = -29192.250443 eV Core-core repulsion = 24718.047263 eV Total energy + Delta-G solvation = -4474.203181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -49.35279 -49.21021 -40.51748 -38.83303 -37.77139 -36.50669 -33.68033 -31.95420 -31.44709 -30.73804 -29.93584 -29.24894 -26.09137 -25.00252 -23.83232 -23.00646 -22.23852 -21.83516 -20.74778 -18.93099 -18.64225 -18.24081 -17.84507 -16.96918 -16.67337 -16.24993 -16.19167 -16.03586 -15.64424 -15.20422 -15.05488 -14.85138 -14.82149 -14.79015 -14.26628 -14.00464 -13.56953 -13.40151 -13.00534 -12.77274 -12.69947 -12.49256 -12.33021 -12.29227 -11.86980 -11.76800 -11.38239 -11.30513 -10.99023 -10.93308 -10.73757 -10.62886 -10.15547 -10.06516 -9.84233 -9.62165 -9.47002 -9.05221 -8.72815 -8.58070 -8.31243 -7.71860 -5.98300 -4.05064 0.43012 0.55013 2.51142 2.85289 3.30562 3.35922 3.37502 3.45099 3.86096 4.01016 4.17087 4.29271 4.36401 4.44572 4.49100 4.64583 4.74039 4.81144 5.01578 5.05210 5.18535 5.25319 5.31535 5.38845 5.47915 5.51033 5.56242 5.70190 5.78422 5.89953 6.05261 6.08697 6.24154 6.34532 6.47276 6.70531 6.73779 6.79672 6.93285 7.20883 7.36220 7.59747 7.67117 7.73934 7.79422 8.07022 8.16577 8.45878 8.98724 9.59177 11.07547 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.001855 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.939350 B =15093.461301 C =15731.304341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.061 3.939 14 N -0.525 5.525 15 C 0.027 3.973 16 C 0.115 3.885 17 H 0.108 0.892 18 O -0.533 6.533 19 C 0.024 3.976 20 O -0.290 6.290 21 C 0.095 3.905 22 C -0.157 4.157 23 C -0.120 4.120 24 C 0.087 3.913 25 F -0.133 7.133 26 C -0.153 4.153 27 C 0.100 3.900 28 F -0.121 7.121 29 C 0.068 3.932 30 H 0.260 0.740 31 H 0.091 0.909 32 H 0.029 0.971 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.371 0.629 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.058 0.942 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.145 -24.846 0.753 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.250 5.250 15 C -0.102 4.102 16 C 0.055 3.945 17 H 0.126 0.874 18 O -0.337 6.337 19 C -0.052 4.052 20 O -0.202 6.202 21 C 0.047 3.953 22 C -0.176 4.176 23 C -0.139 4.139 24 C 0.067 3.933 25 F -0.112 7.112 26 C -0.172 4.172 27 C 0.079 3.921 28 F -0.099 7.099 29 C -0.058 4.058 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.218 0.782 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.173 0.827 45 H 0.077 0.923 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.933 -24.798 0.726 25.759 hybrid contribution 1.763 0.807 -0.411 1.982 sum 8.696 -23.991 0.315 25.520 Atomic orbital electron populations 1.69881 1.05820 1.26471 1.50359 1.24937 0.94838 0.98943 0.95126 0.86690 0.79610 0.83333 0.78502 1.20420 1.21303 1.20324 1.21089 0.92714 0.90690 1.51064 0.92966 1.18653 0.92585 0.90102 0.94967 0.94651 1.21656 1.00034 0.94810 0.98381 1.21660 0.97187 0.96244 1.00357 1.22101 0.95752 0.99146 0.89724 1.61881 1.23423 1.01471 1.38206 1.22625 0.94761 0.91739 1.01102 1.21939 0.92654 0.89507 0.90392 0.87412 1.86692 1.36103 1.94550 1.16367 1.23832 0.95754 0.83395 1.02224 1.86271 1.34665 1.12257 1.87048 1.19101 0.90869 0.86406 0.98882 1.21053 0.91698 0.99838 1.04986 1.21021 1.01415 0.90372 1.01098 1.17141 0.88788 0.82242 1.05131 1.91529 1.78616 1.47603 1.93462 1.20910 0.93040 0.98570 1.04728 1.16553 0.77679 0.91019 1.06806 1.91563 1.27512 1.97021 1.93825 1.22342 0.96464 0.88379 0.98630 0.92959 0.89098 0.95247 0.91871 0.93529 0.96025 0.92158 0.90492 0.94492 0.78215 0.91094 0.90794 0.83319 0.83646 0.82748 0.92311 0.96349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 11.36 55.43 0.63 -24.49 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -13.91 8.56 -34.44 -0.29 -14.21 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 9 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.59 5.03 -26.61 -0.13 -2.73 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.45 16 13 C 0.06 1.04 5.29 -3.83 -0.02 1.02 16 14 N -0.53 -9.11 4.52 -234.66 -1.06 -10.17 16 15 C 0.03 0.34 4.62 -3.82 -0.02 0.32 16 16 C 0.12 1.33 3.12 -26.73 -0.08 1.25 16 17 H 0.11 1.37 6.43 -51.93 -0.33 1.04 16 18 O -0.53 -7.20 13.17 -40.11 -0.53 -7.72 16 19 C 0.02 0.21 4.37 37.16 0.16 0.37 16 20 O -0.29 -3.23 9.97 -24.63 -0.25 -3.48 16 21 C 0.09 0.91 6.69 -39.19 -0.26 0.65 16 22 C -0.16 -1.11 9.04 -39.45 -0.36 -1.46 16 23 C -0.12 -0.79 10.02 -39.52 -0.40 -1.18 16 24 C 0.09 0.67 7.30 -39.43 -0.29 0.38 16 25 F -0.13 -1.11 17.27 2.25 0.04 -1.07 16 26 C -0.15 -1.22 10.00 -39.47 -0.39 -1.61 16 27 C 0.10 0.99 7.31 -39.30 -0.29 0.70 16 28 F -0.12 -1.42 17.11 2.25 0.04 -1.38 16 29 C 0.07 1.38 4.68 -3.83 -0.02 1.37 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.94 6.21 -51.93 -0.32 0.61 16 37 H 0.08 0.87 7.99 -51.93 -0.41 0.46 16 38 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.37 3.73 9.05 45.56 0.41 4.14 16 40 H 0.07 0.47 7.66 -51.93 -0.40 0.08 16 41 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 42 H 0.15 0.73 6.30 -52.49 -0.33 0.40 16 43 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 378.57 15.07 5.70 5.70 Total: -1.00 -30.69 378.57 -9.16 -39.85 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.87 Total: 1.57 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -2.85 Total: -14.80 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.43 Total: -34.66 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.77 Total: -11.20 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.08 Total: -2.45 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.69 -9.16 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250856686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.388 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds