Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50568 * 299.92044 * 9 7 2 11 11 C 1.53119 * 109.50662 * 60.00053 * 9 7 2 12 12 C 1.53115 * 109.16361 * 177.59651 * 11 9 7 13 13 C 1.53042 * 109.27710 * 302.34261 * 12 11 9 14 14 N 1.46849 * 109.52316 * 59.17797 * 13 12 11 15 15 C 1.46894 * 110.99968 * 174.15998 * 14 13 12 16 16 C 1.52999 * 109.47014 * 66.04858 * 15 14 13 17 17 H 1.08995 * 109.47027 * 304.99991 * 16 15 14 18 18 O 1.42896 * 109.47149 * 64.99982 * 16 15 14 19 19 C 1.52998 * 109.46959 * 184.99720 * 16 15 14 20 20 O 1.42899 * 109.47292 * 175.00132 * 19 16 15 21 21 C 1.36000 * 117.00223 * 180.02562 * 20 19 16 22 22 C 1.38628 * 120.03851 * 359.97438 * 21 20 19 23 23 C 1.38191 * 119.99720 * 180.02562 * 22 21 20 24 24 C 1.38455 * 120.06450 * 0.02562 * 23 22 21 25 25 F 1.35105 * 119.95859 * 179.97438 * 24 23 22 26 26 C 1.38435 * 120.07825 * 0.02562 * 24 23 22 27 27 C 1.38338 * 120.00449 * 359.67744 * 26 24 23 28 28 F 1.35102 * 120.03537 * 180.29914 * 27 26 24 29 29 C 1.46847 * 111.19918 * 298.26350 * 14 13 12 30 30 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 31 31 H 1.09008 * 109.52022 * 297.50265 * 11 9 7 32 32 H 1.09000 * 109.52147 * 57.62069 * 11 9 7 33 33 H 1.08994 * 109.50645 * 62.28493 * 12 11 9 34 34 H 1.09005 * 109.50391 * 182.40463 * 12 11 9 35 35 H 1.08990 * 109.46121 * 179.19818 * 13 12 11 36 36 H 1.08996 * 109.46189 * 299.17678 * 13 12 11 37 37 H 1.08994 * 109.46986 * 186.05101 * 15 14 13 38 38 H 1.09003 * 109.47427 * 306.05048 * 15 14 13 39 39 H 0.96702 * 114.00051 * 59.99664 * 18 16 15 40 40 H 1.08996 * 109.47707 * 295.00132 * 19 16 15 41 41 H 1.09005 * 109.46968 * 55.00066 * 19 16 15 42 42 H 1.08004 * 120.00520 * 359.97438 * 22 21 20 43 43 H 1.07994 * 119.96936 * 179.97438 * 23 22 21 44 44 H 1.08007 * 119.99770 * 179.97438 * 26 24 23 45 45 H 1.09007 * 109.45805 * 301.72405 * 29 14 13 46 46 H 1.08995 * 109.46022 * 181.75644 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6249 -2.5539 0.9020 11 6 0.3709 -2.5868 -1.2384 12 6 -0.3448 -3.9403 -1.2552 13 6 0.6953 -5.0623 -1.2177 14 7 1.5112 -4.9349 -0.0034 15 6 2.4286 -6.0736 0.1364 16 6 3.4558 -6.0431 -0.9971 17 1 2.9381 -6.0172 -1.9559 18 8 4.2748 -4.8795 -0.8665 19 6 4.3326 -7.2947 -0.9245 20 8 5.2141 -7.3247 -2.0489 21 6 6.0669 -8.3804 -2.1369 22 6 6.0551 -9.3653 -1.1614 23 6 6.9224 -10.4374 -1.2514 24 6 7.8040 -10.5289 -2.3150 25 9 8.6514 -11.5777 -2.4006 26 6 7.8190 -9.5465 -3.2903 27 6 6.9479 -8.4751 -3.2064 28 9 6.9579 -7.5192 -4.1610 29 6 2.2449 -3.6629 0.0123 30 1 -0.4850 0.8401 -0.0041 31 1 -0.3670 -1.7847 -1.2213 32 1 0.9923 -2.4911 -2.1288 33 1 -0.9959 -4.0185 -0.3846 34 1 -0.9399 -4.0260 -2.1644 35 1 0.1886 -6.0273 -1.2152 36 1 1.3375 -4.9917 -2.0955 37 1 2.9433 -6.0099 1.0950 38 1 1.8627 -7.0040 0.0889 39 1 4.7663 -4.8358 -0.0348 40 1 4.9174 -7.2760 -0.0049 41 1 3.7002 -8.1825 -0.9349 42 1 5.3687 -9.2943 -0.3305 43 1 6.9131 -11.2041 -0.4909 44 1 8.5076 -9.6190 -4.1192 45 1 2.8797 -3.5989 -0.8715 46 1 2.8635 -3.6116 0.9082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250856687.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = -147.352625 kcal Electronic energy + Delta-G solvation = -29745.172194 eV Core-core repulsion = 25271.180974 eV Total energy + Delta-G solvation = -4473.991220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.33118 -49.17013 -40.51589 -39.15547 -37.68317 -36.28357 -33.63724 -31.90703 -31.42136 -30.72206 -29.80994 -29.19563 -25.97266 -24.90014 -23.86607 -23.00351 -22.28266 -21.65661 -20.99696 -18.95612 -18.48999 -18.20820 -17.81959 -16.94006 -16.66758 -16.23907 -16.14531 -16.01564 -15.61740 -15.18284 -14.93707 -14.85404 -14.79433 -14.67681 -14.27584 -13.99583 -13.90050 -13.09740 -12.99100 -12.68349 -12.61296 -12.38361 -12.26977 -12.01554 -11.88150 -11.70563 -11.31404 -11.26517 -11.04390 -10.88954 -10.82062 -10.60917 -10.31193 -9.97663 -9.69770 -9.59650 -9.39528 -8.98027 -8.65036 -8.54952 -8.25284 -7.49930 -5.91994 -3.97157 0.45525 0.57741 2.57944 2.87885 3.34801 3.41261 3.44491 3.48187 3.89106 4.05496 4.24315 4.30789 4.38352 4.48379 4.54049 4.59998 4.73539 4.82351 4.98728 5.13727 5.16112 5.27519 5.38013 5.41575 5.50060 5.53195 5.59421 5.71917 5.76864 5.96332 6.07590 6.11228 6.30038 6.55890 6.60591 6.75847 6.83727 6.88063 7.10792 7.25829 7.42451 7.64817 7.66053 7.79869 7.84257 8.15058 8.24043 8.55727 9.07328 9.66728 11.14081 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019139 B = 0.002201 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.623479 B =12715.856265 C =13421.383317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.053 3.947 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.058 3.942 14 N -0.528 5.528 15 C 0.030 3.970 16 C 0.073 3.927 17 H 0.108 0.892 18 O -0.535 6.535 19 C 0.026 3.974 20 O -0.290 6.290 21 C 0.095 3.905 22 C -0.158 4.158 23 C -0.120 4.120 24 C 0.086 3.914 25 F -0.134 7.134 26 C -0.153 4.153 27 C 0.099 3.901 28 F -0.121 7.121 29 C 0.054 3.946 30 H 0.258 0.742 31 H 0.089 0.911 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.027 0.973 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.371 0.629 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.063 0.937 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.190 -22.952 -2.161 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.034 3.966 10 H 0.046 0.954 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.070 4.070 14 N -0.251 5.251 15 C -0.100 4.100 16 C 0.011 3.989 17 H 0.126 0.874 18 O -0.340 6.340 19 C -0.050 4.050 20 O -0.203 6.203 21 C 0.047 3.953 22 C -0.176 4.176 23 C -0.139 4.139 24 C 0.066 3.934 25 F -0.112 7.112 26 C -0.172 4.172 27 C 0.079 3.921 28 F -0.099 7.099 29 C -0.072 4.072 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.219 0.781 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.172 0.828 45 H 0.081 0.919 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.451 -22.501 -2.495 24.935 hybrid contribution 1.352 0.504 -0.199 1.457 sum 11.803 -21.996 -2.694 25.108 Atomic orbital electron populations 1.69895 1.05825 1.26176 1.51058 1.24945 0.94817 0.98922 0.95317 0.86643 0.79867 0.83729 0.78017 1.20822 1.21364 1.19998 1.21154 0.92862 0.90616 1.50114 0.92790 1.18689 0.92708 0.90761 0.94449 0.95359 1.21653 1.00039 0.94525 0.98700 1.21665 0.97105 0.96576 1.00124 1.22094 0.95628 0.98691 0.90623 1.62334 1.22600 1.02573 1.37596 1.22807 0.93674 0.96512 0.97007 1.22902 0.90554 0.82889 1.02549 0.87415 1.86818 1.62196 1.41219 1.43777 1.23884 0.92073 1.01248 0.87776 1.86315 1.47273 1.40440 1.46285 1.19122 0.92305 0.89422 0.94410 1.21037 1.02274 0.94354 0.99968 1.21010 0.95433 0.99468 0.98015 1.17137 0.92895 0.86564 0.96776 1.91528 1.68779 1.54736 1.96192 1.20914 1.01298 0.93598 1.01435 1.16577 0.98400 0.89265 0.87857 1.91571 1.95566 1.61461 1.61297 1.22641 0.96496 0.87280 1.00766 0.93179 0.89220 0.95110 0.92190 0.93570 0.92621 0.95444 0.90404 0.90450 0.78118 0.91221 0.90854 0.83344 0.83669 0.82757 0.91943 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 11.35 55.43 0.63 -24.99 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.32 2.26 -91.69 -0.21 1.11 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 13 C 0.06 0.97 5.06 -3.83 -0.02 0.95 16 14 N -0.53 -9.02 4.86 -234.68 -1.14 -10.16 16 15 C 0.03 0.36 5.18 -3.83 -0.02 0.34 16 16 C 0.07 0.87 2.96 -26.73 -0.08 0.79 16 17 H 0.11 1.50 6.46 -51.93 -0.34 1.16 16 18 O -0.53 -7.75 9.75 -40.09 -0.39 -8.14 16 19 C 0.03 0.24 4.37 37.16 0.16 0.40 16 20 O -0.29 -3.47 9.97 -24.60 -0.25 -3.72 16 21 C 0.09 0.97 6.69 -39.20 -0.26 0.71 16 22 C -0.16 -1.16 9.03 -39.45 -0.36 -1.52 16 23 C -0.12 -0.82 10.02 -39.52 -0.40 -1.22 16 24 C 0.09 0.70 7.30 -39.43 -0.29 0.41 16 25 F -0.13 -1.15 17.27 2.25 0.04 -1.11 16 26 C -0.15 -1.30 10.00 -39.47 -0.39 -1.70 16 27 C 0.10 1.05 7.31 -39.30 -0.29 0.77 16 28 F -0.12 -1.53 17.11 2.25 0.04 -1.49 16 29 C 0.05 1.11 3.44 -3.83 -0.01 1.09 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.09 2.40 6.15 -51.92 -0.32 2.08 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.79 8.06 -51.93 -0.42 0.38 16 36 H 0.03 0.47 6.65 -51.93 -0.35 0.13 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.37 4.11 9.05 45.56 0.41 4.52 16 40 H 0.07 0.49 7.66 -51.93 -0.40 0.09 16 41 H 0.07 0.50 7.66 -51.93 -0.40 0.11 16 42 H 0.15 0.75 6.30 -52.48 -0.33 0.42 16 43 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 45 H 0.06 1.34 5.58 -51.93 -0.29 1.05 16 46 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -31.42 372.41 -9.09 -40.50 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.76 Total: 2.75 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.85 Total: -15.78 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.51 Total: -35.15 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.64 Total: -11.85 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.08 Total: -2.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.42 -9.09 -40.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250856687.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.848 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds