Wall clock time and date at job start Sat Apr 11 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99736 * 2 1 4 4 H 1.48508 * 109.47067 * 274.98579 * 3 2 1 5 5 H 1.48496 * 109.47262 * 34.98902 * 3 2 1 6 6 H 1.48503 * 109.46928 * 154.98748 * 3 2 1 7 7 C 1.37874 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00033 * 177.43170 * 7 2 1 9 9 C 1.50699 * 120.00298 * 357.43083 * 7 2 1 10 10 C 1.53123 * 109.52396 * 185.49419 * 9 7 2 11 11 C 1.53036 * 109.27694 * 182.37896 * 10 9 7 12 12 N 1.46841 * 109.52731 * 59.17827 * 11 10 9 13 13 C 1.46895 * 111.00098 * 174.16233 * 12 11 10 14 14 C 1.52998 * 109.46993 * 293.71499 * 13 12 11 15 15 H 1.09002 * 109.47639 * 60.38791 * 14 13 12 16 16 O 1.42898 * 109.47110 * 300.38456 * 14 13 12 17 17 C 1.53005 * 109.47412 * 180.38674 * 14 13 12 18 18 O 1.42902 * 109.47436 * 184.99928 * 17 14 13 19 19 C 1.36000 * 116.99891 * 180.02562 * 18 17 14 20 20 C 1.38632 * 120.03686 * 359.97438 * 19 18 17 21 21 C 1.38190 * 119.99389 * 179.74594 * 20 19 18 22 22 C 1.38463 * 120.06780 * 0.23517 * 21 20 19 23 23 F 1.35095 * 119.96099 * 179.97438 * 22 21 20 24 24 C 1.38446 * 120.07177 * 0.02562 * 22 21 20 25 25 C 1.38330 * 120.00676 * 0.02562 * 24 22 21 26 26 F 1.35105 * 120.03455 * 180.02562 * 25 24 22 27 27 C 1.46851 * 111.19409 * 298.25736 * 12 11 10 28 28 C 1.53028 * 109.52635 * 61.74327 * 27 12 11 29 29 H 0.96990 * 119.99716 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.52205 * 305.61574 * 9 7 2 31 31 H 1.08996 * 109.50485 * 62.43261 * 10 9 7 32 32 H 1.08999 * 109.53037 * 302.33517 * 10 9 7 33 33 H 1.09003 * 109.46084 * 299.15208 * 11 10 9 34 34 H 1.09001 * 109.45017 * 179.18976 * 11 10 9 35 35 H 1.09005 * 109.47493 * 173.71566 * 13 12 11 36 36 H 1.08996 * 109.47596 * 53.71485 * 13 12 11 37 37 H 0.96699 * 114.00260 * 299.99986 * 16 14 13 38 38 H 1.09004 * 109.47025 * 64.99778 * 17 14 13 39 39 H 1.09000 * 109.47021 * 304.99910 * 17 14 13 40 40 H 1.07995 * 120.01020 * 0.03002 * 20 19 18 41 41 H 1.07992 * 119.97009 * 180.25318 * 21 20 19 42 42 H 1.07997 * 119.99315 * 179.97438 * 24 22 21 43 43 H 1.09007 * 109.46102 * 181.75996 * 27 12 11 44 44 H 1.09004 * 109.46148 * 301.72252 * 27 12 11 45 45 H 1.09004 * 109.50660 * 180.87745 * 28 27 12 46 46 H 1.09004 * 109.53867 * 60.77743 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3913 2.1073 -1.3949 5 1 1.5033 2.6199 0.8028 6 1 3.5955 1.4121 0.5920 7 6 2.0046 -1.1940 0.0005 8 1 3.0838 -1.1946 -0.0414 9 6 1.2523 -2.4985 0.0596 10 6 2.2456 -3.6569 0.1858 11 6 1.4795 -4.9817 0.1856 12 7 0.7124 -5.1048 -1.0604 13 6 0.0742 -6.4243 -1.1575 14 6 1.1510 -7.5030 -1.2911 15 1 1.7972 -7.4820 -0.4135 16 8 1.9306 -7.2553 -2.4628 17 6 0.4860 -8.8765 -1.4019 18 8 1.4906 -9.8929 -1.4095 19 6 1.0648 -11.1810 -1.5041 20 6 -0.2907 -11.4595 -1.5873 21 6 -0.7221 -12.7685 -1.6888 22 6 0.1981 -13.8030 -1.7025 23 9 -0.2261 -15.0819 -1.8013 24 6 1.5521 -13.5284 -1.6142 25 6 1.9872 -12.2193 -1.5114 26 9 3.3085 -11.9506 -1.4257 27 6 -0.2808 -4.0297 -1.1808 28 6 0.4327 -2.6765 -1.2214 29 1 -0.4849 0.8400 0.0004 30 1 0.5850 -2.4954 0.9215 31 1 2.8027 -3.5587 1.1176 32 1 2.9379 -3.6366 -0.6559 33 1 0.7980 -5.0073 1.0359 34 1 2.1852 -5.8090 0.2609 35 1 -0.5762 -6.4500 -2.0319 36 1 -0.5161 -6.6094 -0.2602 37 1 1.4193 -7.2594 -3.2835 38 1 -0.0898 -8.9279 -2.3260 39 1 -0.1781 -9.0284 -0.5511 40 1 -1.0093 -10.6535 -1.5775 41 1 -1.7779 -12.9847 -1.7577 42 1 2.2687 -14.3364 -1.6246 43 1 -0.8539 -4.1658 -2.0980 44 1 -0.9541 -4.0598 -0.3242 45 1 -0.3056 -1.8779 -1.2951 46 1 1.0959 -2.6399 -2.0857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250858220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:31 Heat of formation + Delta-G solvation = -152.972789 kcal Electronic energy + Delta-G solvation = -29110.657833 eV Core-core repulsion = 24636.422904 eV Total energy + Delta-G solvation = -4474.234929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -49.36746 -49.21874 -40.53884 -38.86673 -37.79030 -36.53777 -33.81450 -31.75818 -31.44428 -30.69645 -29.91399 -29.26251 -26.64922 -24.83573 -23.58105 -22.91301 -22.54105 -21.60873 -20.93242 -18.95057 -18.62530 -18.25883 -17.86307 -16.99472 -16.60484 -16.37190 -16.19494 -16.11478 -15.65530 -15.23507 -15.13924 -14.88443 -14.83343 -14.63273 -14.32834 -14.07910 -13.76114 -13.28436 -12.99132 -12.73477 -12.71566 -12.49690 -12.36216 -12.31416 -11.90285 -11.65756 -11.38044 -11.30844 -10.95261 -10.88476 -10.87833 -10.48081 -10.22424 -10.14002 -9.95218 -9.63697 -9.43151 -8.92137 -8.73883 -8.59702 -8.29592 -7.81368 -5.98003 -4.01682 0.41528 0.53419 2.48709 2.83723 3.31838 3.38858 3.43026 3.43581 3.84475 3.98448 4.13543 4.26837 4.34316 4.46113 4.46596 4.60892 4.70190 4.77998 4.97483 5.01537 5.13233 5.23615 5.33415 5.37209 5.46047 5.49398 5.51662 5.67996 5.81077 5.87809 6.04131 6.07317 6.13165 6.31757 6.53160 6.63005 6.77595 6.84826 7.07539 7.12815 7.38423 7.56530 7.59320 7.71167 7.80856 8.03830 8.10862 8.49071 9.02717 9.62657 11.09583 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034803 B = 0.001774 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.341609 B =15780.755998 C =16275.069355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.057 3.943 12 N -0.522 5.522 13 C 0.026 3.974 14 C 0.115 3.885 15 H 0.109 0.891 16 O -0.533 6.533 17 C 0.024 3.976 18 O -0.289 6.289 19 C 0.095 3.905 20 C -0.157 4.157 21 C -0.120 4.120 22 C 0.087 3.913 23 F -0.133 7.133 24 C -0.153 4.153 25 C 0.100 3.900 26 F -0.121 7.121 27 C 0.058 3.942 28 C -0.101 4.101 29 H 0.259 0.741 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.023 0.977 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.370 0.630 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.055 0.945 44 H 0.022 0.978 45 H 0.086 0.914 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.236 -26.747 -4.037 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.247 5.247 13 C -0.103 4.103 14 C 0.055 3.945 15 H 0.127 0.873 16 O -0.336 6.336 17 C -0.052 4.052 18 O -0.202 6.202 19 C 0.047 3.953 20 C -0.176 4.176 21 C -0.139 4.139 22 C 0.067 3.933 23 F -0.112 7.112 24 C -0.172 4.172 25 C 0.080 3.920 26 F -0.099 7.099 27 C -0.069 4.069 28 C -0.140 4.140 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.217 0.783 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.173 0.827 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.104 0.896 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.340 -26.462 -3.963 26.965 hybrid contribution -0.836 0.562 0.314 1.055 sum -4.176 -25.900 -3.649 26.487 Atomic orbital electron populations 1.69907 1.05874 1.26295 1.51185 1.24978 0.94845 0.99030 0.95236 0.86621 0.79997 0.83716 0.77912 1.20818 1.21333 1.19919 1.21215 0.93008 0.90621 1.49853 0.92703 1.18697 0.92896 0.91775 0.93755 1.21668 0.98841 0.93392 1.00466 1.22200 0.96300 0.99634 0.88869 1.61873 1.25712 1.00180 1.36964 1.22629 0.95248 0.91207 1.01222 1.21934 0.93634 0.87894 0.91031 0.87284 1.86706 1.37228 1.94101 1.15585 1.23824 0.90958 0.88088 1.02305 1.86276 1.35299 1.11188 1.87456 1.19095 0.92249 0.84946 0.98985 1.21042 0.93755 0.97756 1.05030 1.21021 1.00485 0.91218 1.01196 1.17146 0.91677 0.79244 1.05213 1.91528 1.90367 1.35555 1.93746 1.20913 0.95744 0.95882 1.04700 1.16556 0.77780 0.90911 1.06775 1.91569 1.30363 1.94382 1.93587 1.22288 0.92840 0.93114 0.98609 1.21638 0.99940 0.92427 0.99963 0.93167 0.95912 0.93128 0.92323 0.95900 0.92173 0.90625 0.94343 0.78349 0.91146 0.90765 0.83341 0.83649 0.82733 0.92691 0.95932 0.89603 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 11.68 55.43 0.65 -24.69 16 2 C 0.06 1.65 5.35 -17.82 -0.10 1.56 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.96 8.50 -34.44 -0.29 -14.26 16 8 H 0.05 1.50 7.75 -52.48 -0.41 1.10 16 9 C 0.05 1.17 2.08 -91.65 -0.19 0.98 16 10 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 11 C 0.06 1.01 5.29 -3.84 -0.02 0.99 16 12 N -0.52 -8.66 4.51 -234.68 -1.06 -9.72 16 13 C 0.03 0.31 4.62 -3.83 -0.02 0.29 16 14 C 0.12 1.29 3.13 -26.73 -0.08 1.20 16 15 H 0.11 1.38 6.46 -51.93 -0.34 1.04 16 16 O -0.53 -6.93 13.16 -40.08 -0.53 -7.45 16 17 C 0.02 0.20 4.38 37.16 0.16 0.36 16 18 O -0.29 -3.17 9.97 -24.59 -0.25 -3.41 16 19 C 0.09 0.89 6.69 -39.20 -0.26 0.63 16 20 C -0.16 -1.07 9.03 -39.45 -0.36 -1.43 16 21 C -0.12 -0.76 10.02 -39.52 -0.40 -1.16 16 22 C 0.09 0.66 7.30 -39.42 -0.29 0.37 16 23 F -0.13 -1.09 17.26 2.25 0.04 -1.05 16 24 C -0.15 -1.20 10.00 -39.47 -0.39 -1.59 16 25 C 0.10 0.98 7.31 -39.31 -0.29 0.69 16 26 F -0.12 -1.40 17.11 2.25 0.04 -1.37 16 27 C 0.06 1.08 5.46 -3.84 -0.02 1.06 16 28 C -0.10 -2.33 5.18 -26.66 -0.14 -2.47 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.96 6.24 -51.93 -0.32 0.64 16 35 H 0.08 0.77 7.98 -51.93 -0.41 0.36 16 36 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.37 3.46 9.05 45.56 0.41 3.87 16 38 H 0.07 0.44 7.66 -51.93 -0.40 0.04 16 39 H 0.07 0.49 7.66 -51.93 -0.40 0.09 16 40 H 0.15 0.68 6.30 -52.49 -0.33 0.35 16 41 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.05 0.91 8.01 -51.92 -0.42 0.49 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.19 6.51 -51.93 -0.34 1.86 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -31.08 379.24 -9.12 -40.20 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.89 Total: 0.61 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.82 Total: -15.14 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.41 Total: -34.42 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.77 Total: -10.87 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.08 Total: -2.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.08 -9.12 -40.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250858220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.768 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds