Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99855 * 2 1 4 4 H 1.48504 * 109.46710 * 274.99425 * 3 2 1 5 5 H 1.48498 * 109.47488 * 34.99559 * 3 2 1 6 6 H 1.48497 * 109.47064 * 154.99935 * 3 2 1 7 7 C 1.37875 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99818 * 175.33986 * 7 2 1 9 9 C 1.50703 * 120.00426 * 355.34460 * 7 2 1 10 10 C 1.53115 * 109.52573 * 185.40628 * 9 7 2 11 11 C 1.53033 * 109.28090 * 182.37807 * 10 9 7 12 12 N 1.46853 * 109.52283 * 59.17723 * 11 10 9 13 13 C 1.46899 * 110.99585 * 174.16280 * 12 11 10 14 14 C 1.53004 * 109.46553 * 176.32161 * 13 12 11 15 15 H 1.08990 * 109.47253 * 299.44738 * 14 13 12 16 16 O 1.42895 * 109.47194 * 59.45350 * 14 13 12 17 17 C 1.53009 * 109.46976 * 179.44870 * 14 13 12 18 18 O 1.42897 * 109.47131 * 175.00100 * 17 14 13 19 19 C 1.35999 * 117.00103 * 179.97438 * 18 17 14 20 20 C 1.38642 * 120.03548 * 0.24342 * 19 18 17 21 21 C 1.38193 * 119.99155 * 180.27197 * 20 19 18 22 22 C 1.38452 * 120.06678 * 359.76090 * 21 20 19 23 23 F 1.35103 * 119.95768 * 180.02562 * 22 21 20 24 24 C 1.38443 * 120.07873 * 359.97438 * 22 21 20 25 25 C 1.38327 * 120.00406 * 359.97438 * 24 22 21 26 26 F 1.35101 * 120.03411 * 180.02562 * 25 24 22 27 27 C 1.46841 * 111.19890 * 298.26098 * 12 11 10 28 28 C 1.53039 * 109.52588 * 61.74100 * 27 12 11 29 29 H 0.96997 * 120.00200 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.52222 * 305.53862 * 9 7 2 31 31 H 1.09000 * 109.50352 * 62.43180 * 10 9 7 32 32 H 1.09006 * 109.53386 * 302.33761 * 10 9 7 33 33 H 1.09003 * 109.46189 * 299.16526 * 11 10 9 34 34 H 1.08994 * 109.45903 * 179.19044 * 11 10 9 35 35 H 1.08997 * 109.47600 * 56.32806 * 13 12 11 36 36 H 1.09000 * 109.47570 * 296.31691 * 13 12 11 37 37 H 0.96701 * 114.00465 * 59.99559 * 16 14 13 38 38 H 1.08994 * 109.46612 * 54.99931 * 17 14 13 39 39 H 1.09007 * 109.46905 * 295.00081 * 17 14 13 40 40 H 1.07997 * 120.00544 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.96159 * 179.74056 * 21 20 19 42 42 H 1.08003 * 119.99572 * 180.02562 * 24 22 21 43 43 H 1.08999 * 109.46750 * 181.75891 * 27 12 11 44 44 H 1.09001 * 109.46545 * 301.72365 * 27 12 11 45 45 H 1.08999 * 109.50362 * 180.88121 * 28 27 12 46 46 H 1.08998 * 109.53355 * 60.77771 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5917 7 6 2.0046 -1.1940 0.0005 8 1 3.0819 -1.1956 -0.0755 9 6 1.2548 -2.4970 0.1070 10 6 2.2520 -3.6534 0.2207 11 6 1.4866 -4.9777 0.2688 12 7 0.6789 -5.1222 -0.9491 13 6 0.0381 -6.4430 -1.0022 14 6 -0.8650 -6.5225 -2.2347 15 1 -1.6368 -5.7556 -2.1696 16 8 -0.0833 -6.3129 -3.4123 17 6 -1.5218 -7.9030 -2.2975 18 8 -2.4531 -7.9386 -3.3807 19 6 -3.1275 -9.1031 -3.5771 20 6 -2.9008 -10.1858 -2.7414 21 6 -3.5825 -11.3705 -2.9453 22 6 -4.4958 -11.4760 -3.9805 23 9 -5.1614 -12.6350 -4.1775 24 6 -4.7284 -10.3948 -4.8134 25 6 -4.0485 -9.2072 -4.6115 26 9 -4.2755 -8.1516 -5.4236 27 6 -0.3178 -4.0491 -1.0556 28 6 0.3937 -2.6970 -1.1432 29 1 -0.4850 0.8400 -0.0004 30 1 0.6161 -2.4786 0.9901 31 1 2.8393 -3.5392 1.1318 32 1 2.9163 -3.6481 -0.6435 33 1 0.8332 -4.9881 1.1412 34 1 2.1944 -5.8039 0.3352 35 1 -0.5599 -6.5932 -0.1034 36 1 0.8040 -7.2163 -1.0625 37 1 0.6245 -6.9603 -3.5350 38 1 -2.0451 -8.0992 -1.3618 39 1 -0.7558 -8.6631 -2.4517 40 1 -2.1880 -10.1050 -1.9341 41 1 -3.4024 -12.2150 -2.2965 42 1 -5.4414 -10.4785 -5.6203 43 1 -0.9207 -4.2008 -1.9509 44 1 -0.9627 -4.0638 -0.1770 45 1 -0.3467 -1.8996 -1.2065 46 1 1.0282 -2.6757 -2.0293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250858221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = -150.503207 kcal Electronic energy + Delta-G solvation = -29233.448292 eV Core-core repulsion = 24759.320453 eV Total energy + Delta-G solvation = -4474.127840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.34917 -49.18972 -40.52528 -38.91720 -37.76371 -36.51237 -33.80084 -31.78410 -31.42912 -30.61349 -29.85190 -29.31236 -26.63599 -24.82950 -23.56470 -22.89197 -22.60019 -21.71070 -20.72833 -18.92802 -18.62233 -18.24711 -17.84793 -16.96091 -16.63710 -16.30669 -16.19046 -16.08751 -15.63318 -15.25250 -15.16486 -14.81916 -14.80031 -14.58626 -14.34560 -14.09237 -13.77017 -13.20524 -12.91544 -12.84498 -12.70114 -12.46375 -12.44633 -12.17214 -11.88988 -11.69886 -11.47648 -11.27601 -10.91732 -10.83926 -10.75953 -10.48868 -10.22201 -10.09386 -9.93669 -9.61653 -9.38830 -8.95240 -8.70010 -8.57581 -8.26737 -7.80682 -5.95978 -4.00152 0.43513 0.55416 2.50861 2.85680 3.32904 3.39975 3.43382 3.45728 3.86453 4.00198 4.14814 4.28225 4.35852 4.47242 4.48162 4.62085 4.71131 4.78114 4.98092 5.02723 5.15252 5.25297 5.35158 5.39272 5.47467 5.50951 5.51598 5.65435 5.81452 5.90619 6.06235 6.09228 6.17500 6.28304 6.61630 6.63115 6.79896 6.83383 7.06205 7.15263 7.42967 7.57497 7.62351 7.71095 7.83519 8.06004 8.15125 8.50374 9.03854 9.64035 11.11113 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.001889 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.166743 B =14822.799727 C =15475.402833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.523 5.523 13 C 0.027 3.973 14 C 0.110 3.890 15 H 0.114 0.886 16 O -0.532 6.532 17 C 0.025 3.975 18 O -0.289 6.289 19 C 0.095 3.905 20 C -0.157 4.157 21 C -0.121 4.121 22 C 0.087 3.913 23 F -0.134 7.134 24 C -0.153 4.153 25 C 0.100 3.900 26 F -0.120 7.120 27 C 0.051 3.949 28 C -0.101 4.101 29 H 0.259 0.741 30 H 0.022 0.978 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.370 0.630 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.064 0.936 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 -25.235 -5.075 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.248 5.248 13 C -0.102 4.102 14 C 0.050 3.950 15 H 0.132 0.868 16 O -0.336 6.336 17 C -0.051 4.051 18 O -0.202 6.202 19 C 0.047 3.953 20 C -0.176 4.176 21 C -0.139 4.139 22 C 0.067 3.933 23 F -0.112 7.112 24 C -0.172 4.172 25 C 0.080 3.920 26 F -0.098 7.098 27 C -0.076 4.076 28 C -0.139 4.139 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.217 0.783 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.173 0.827 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.732 -24.358 -5.679 26.179 hybrid contribution 0.082 0.112 0.863 0.874 sum -7.650 -24.246 -4.816 25.876 Atomic orbital electron populations 1.69904 1.05880 1.26318 1.50939 1.24980 0.94834 0.99035 0.95224 0.86627 0.79951 0.83768 0.77928 1.20804 1.21317 1.19962 1.21192 0.93117 0.90683 1.49864 0.92753 1.18703 0.92709 0.91682 0.94041 1.21677 0.98786 0.93507 1.00416 1.22145 0.95853 0.99350 0.89360 1.61969 1.24118 1.00321 1.38361 1.22638 0.97087 0.94424 0.96053 1.22024 0.93079 0.93888 0.85992 0.86844 1.86722 1.47995 1.56650 1.42193 1.23813 0.91614 1.00782 0.88887 1.86281 1.52821 1.30351 1.50701 1.19102 0.93787 0.87423 0.94951 1.21037 1.03256 0.92093 1.01222 1.21011 0.96214 0.99022 0.97702 1.17141 0.96047 0.82431 0.97676 1.91529 1.78955 1.46025 1.94705 1.20915 1.02883 0.91037 1.02399 1.16560 0.98654 0.85359 0.91396 1.91572 1.93367 1.54315 1.70592 1.22396 0.93188 0.93193 0.98787 1.21632 1.00011 0.92509 0.99726 0.93127 0.96023 0.93113 0.92430 0.95823 0.92521 0.94449 0.90738 0.78330 0.90764 0.91169 0.83366 0.83669 0.82724 0.91773 0.96168 0.89472 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 11.60 55.43 0.64 -24.93 16 2 C 0.06 1.68 5.36 -17.82 -0.10 1.58 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.04 8.49 -34.44 -0.29 -14.33 16 8 H 0.05 1.48 7.75 -52.49 -0.41 1.08 16 9 C 0.05 1.17 2.10 -91.65 -0.19 0.97 16 10 C -0.11 -2.18 5.32 -26.65 -0.14 -2.33 16 11 C 0.06 1.03 5.46 -3.83 -0.02 1.01 16 12 N -0.52 -8.71 4.62 -234.67 -1.08 -9.79 16 13 C 0.03 0.32 4.79 -3.82 -0.02 0.30 16 14 C 0.11 1.29 2.69 -26.72 -0.07 1.21 16 15 H 0.11 1.55 6.22 -51.93 -0.32 1.23 16 16 O -0.53 -7.12 13.16 -40.08 -0.53 -7.65 16 17 C 0.02 0.22 4.37 37.16 0.16 0.38 16 18 O -0.29 -3.29 9.97 -24.59 -0.25 -3.54 16 19 C 0.09 0.93 6.69 -39.19 -0.26 0.66 16 20 C -0.16 -1.10 9.04 -39.45 -0.36 -1.46 16 21 C -0.12 -0.78 10.02 -39.52 -0.40 -1.18 16 22 C 0.09 0.68 7.30 -39.43 -0.29 0.39 16 23 F -0.13 -1.11 17.27 2.25 0.04 -1.07 16 24 C -0.15 -1.24 10.00 -39.47 -0.39 -1.64 16 25 C 0.10 1.02 7.31 -39.31 -0.29 0.73 16 26 F -0.12 -1.46 17.11 2.25 0.04 -1.42 16 27 C 0.05 0.99 5.04 -3.84 -0.02 0.97 16 28 C -0.10 -2.38 5.18 -26.65 -0.14 -2.52 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.37 3.51 9.05 45.56 0.41 3.92 16 38 H 0.07 0.51 7.65 -51.93 -0.40 0.11 16 39 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 40 H 0.15 0.70 6.30 -52.49 -0.33 0.37 16 41 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.06 1.19 5.86 -51.93 -0.30 0.88 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 2.31 6.43 -51.93 -0.33 1.97 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -31.35 378.36 -9.13 -40.49 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.87 Total: 1.05 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.81 Total: -15.24 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: -0.44 Total: -34.73 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.77 Total: -11.19 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.08 Total: -2.49 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.35 -9.13 -40.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250858221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.015 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds