Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00086 * 2 1 4 4 H 1.48510 * 109.46831 * 270.00017 * 3 2 1 5 5 H 1.48493 * 109.46960 * 29.99824 * 3 2 1 6 6 H 1.48498 * 109.47250 * 150.00258 * 3 2 1 7 7 C 1.37878 * 119.99845 * 179.97438 * 2 1 3 8 8 C 1.51266 * 120.84732 * 180.02562 * 7 2 1 9 9 C 1.53228 * 108.53649 * 231.32708 * 8 7 2 10 10 C 1.52961 * 109.40479 * 305.37408 * 9 8 7 11 11 H 1.09000 * 109.35453 * 303.52694 * 10 9 8 12 12 N 1.46904 * 109.41240 * 183.70599 * 10 9 8 13 13 C 1.46896 * 111.00016 * 84.64671 * 12 10 9 14 14 C 1.53002 * 109.47181 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47070 * 305.00230 * 14 13 12 16 16 O 1.42903 * 109.46923 * 65.00394 * 14 13 12 17 17 C 1.53000 * 109.47233 * 184.99855 * 14 13 12 18 18 O 1.42905 * 109.46848 * 175.00017 * 17 14 13 19 19 C 1.36000 * 116.99792 * 180.02562 * 18 17 14 20 20 C 1.38640 * 120.03677 * 0.02562 * 19 18 17 21 21 C 1.38193 * 119.99185 * 180.02562 * 20 19 18 22 22 C 1.38450 * 120.07060 * 0.02562 * 21 20 19 23 23 F 1.35102 * 119.96342 * 179.97438 * 22 21 20 24 24 C 1.38444 * 120.07428 * 0.02562 * 22 21 20 25 25 C 1.38332 * 120.00535 * 359.67737 * 24 22 21 26 26 F 1.35100 * 120.03446 * 180.29876 * 25 24 22 27 27 C 1.52952 * 109.81692 * 63.59845 * 10 9 8 28 28 C 1.51269 * 120.85018 * 359.97438 * 7 2 1 29 29 H 0.96999 * 119.99955 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.63141 * 351.04227 * 8 7 2 31 31 H 1.09002 * 109.62554 * 111.42153 * 8 7 2 32 32 H 1.09004 * 109.48085 * 185.39958 * 9 8 7 33 33 H 1.08999 * 109.48235 * 65.35689 * 9 8 7 34 34 H 1.00903 * 111.00052 * 320.69217 * 12 10 9 35 35 H 1.09008 * 109.47165 * 59.99956 * 13 12 10 36 36 H 1.08997 * 109.47437 * 299.99850 * 13 12 10 37 37 H 0.96700 * 114.00234 * 59.99815 * 16 14 13 38 38 H 1.08990 * 109.47170 * 295.00238 * 17 14 13 39 39 H 1.09001 * 109.46952 * 55.00315 * 17 14 13 40 40 H 1.07997 * 120.00498 * 0.02646 * 20 19 18 41 41 H 1.08002 * 119.96176 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.99283 * 179.97438 * 24 22 21 43 43 H 1.09007 * 109.48524 * 56.38057 * 27 10 9 44 44 H 1.09000 * 109.48684 * 176.42125 * 27 10 9 45 45 H 1.08996 * 109.62389 * 8.96464 * 28 7 2 46 46 H 1.08994 * 109.62486 * 248.38649 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2165 0.0011 9 6 3.9910 -2.1317 -1.1327 10 6 3.3402 -3.5076 -0.9810 11 1 3.5739 -3.9111 0.0042 12 7 3.8620 -4.4112 -2.0151 13 6 5.1277 -5.0233 -1.5894 14 6 5.6386 -5.9560 -2.6894 15 1 4.8655 -6.6835 -2.9369 16 8 5.9614 -5.1898 -3.8516 17 6 6.8890 -6.6878 -2.1976 18 8 7.2985 -7.6430 -3.1784 19 6 8.4027 -8.3845 -2.8948 20 6 9.0764 -8.1962 -1.6978 21 6 10.1986 -8.9498 -1.4107 22 6 10.6517 -9.8927 -2.3177 23 9 11.7494 -10.6278 -2.0351 24 6 9.9818 -10.0823 -3.5143 25 6 8.8545 -9.3340 -3.8021 26 9 8.1969 -9.5228 -4.9670 27 6 1.8233 -3.3832 -1.1329 28 6 1.2676 -2.5152 0.0017 29 1 -0.4850 0.8400 0.0004 30 1 3.8982 -0.2079 -0.1588 31 1 3.8771 -1.5966 0.9571 32 1 5.0752 -2.2354 -1.0870 33 1 3.7071 -1.6989 -2.0920 34 1 3.9713 -3.9292 -2.8948 35 1 4.9656 -5.5947 -0.6753 36 1 5.8648 -4.2421 -1.4036 37 1 6.6442 -4.5210 -3.7047 38 1 7.6908 -5.9678 -2.0346 39 1 6.6654 -7.2007 -1.2621 40 1 8.7241 -7.4608 -0.9897 41 1 10.7233 -8.8024 -0.4783 42 1 10.3366 -10.8179 -4.2210 43 1 1.5906 -2.9209 -2.0922 44 1 1.3709 -4.3739 -1.0874 45 1 0.2036 -2.3410 -0.1580 46 1 1.4199 -3.0184 0.9564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250874140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = -165.981144 kcal Electronic energy + Delta-G solvation = -28832.512857 eV Core-core repulsion = 24357.713843 eV Total energy + Delta-G solvation = -4474.799013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.38254 -49.25327 -40.56619 -38.64368 -37.66257 -36.75128 -34.03531 -31.92761 -31.47863 -30.78280 -29.71170 -29.39342 -27.16369 -25.04379 -23.55403 -22.87026 -21.91246 -21.53293 -21.22511 -19.44038 -18.97360 -18.29103 -17.89661 -17.08314 -16.75268 -16.33773 -16.24090 -16.04013 -15.70551 -15.25687 -15.15930 -15.00524 -14.85645 -14.47260 -14.17335 -14.06525 -13.60687 -13.23117 -13.04936 -12.87285 -12.74692 -12.53140 -12.36502 -12.12730 -11.98548 -11.87312 -11.53872 -11.35945 -11.08383 -10.99874 -10.81465 -10.67885 -10.21576 -10.17478 -9.85118 -9.65878 -9.64731 -8.91308 -8.80101 -8.62458 -8.48529 -7.91069 -6.11338 -4.02115 0.39360 0.51088 2.44788 2.81504 3.23540 3.32515 3.33112 3.41179 3.82216 3.96822 4.09071 4.20197 4.31481 4.35697 4.44695 4.59273 4.69983 4.84173 4.88537 4.98245 5.13922 5.19274 5.21721 5.34918 5.43662 5.47571 5.51198 5.69873 5.80106 5.89616 6.04604 6.13920 6.42567 6.66210 6.72901 6.74986 6.83511 6.86478 6.99481 7.16623 7.34827 7.41156 7.49713 7.62152 7.68879 7.84754 7.87339 8.38817 8.96591 9.53043 10.98202 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.001767 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.552420 B =15841.767090 C =16243.459551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.488 4.488 8 C -0.011 4.011 9 C -0.134 4.134 10 C 0.100 3.900 11 H 0.064 0.936 12 N -0.684 5.684 13 C 0.033 3.967 14 C 0.112 3.888 15 H 0.119 0.881 16 O -0.548 6.548 17 C 0.025 3.975 18 O -0.290 6.290 19 C 0.094 3.906 20 C -0.157 4.157 21 C -0.120 4.120 22 C 0.087 3.913 23 F -0.133 7.133 24 C -0.153 4.153 25 C 0.100 3.900 26 F -0.121 7.121 27 C -0.093 4.093 28 C 0.009 3.991 29 H 0.264 0.736 30 H 0.027 0.973 31 H 0.014 0.986 32 H 0.025 0.975 33 H 0.053 0.947 34 H 0.344 0.656 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.371 0.629 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.048 0.952 44 H 0.037 0.963 45 H 0.058 0.942 46 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.862 -17.595 -3.966 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.507 4.507 8 C -0.050 4.050 9 C -0.173 4.173 10 C -0.009 4.009 11 H 0.082 0.918 12 N -0.315 5.315 13 C -0.097 4.097 14 C 0.052 3.948 15 H 0.137 0.863 16 O -0.352 6.352 17 C -0.051 4.051 18 O -0.203 6.203 19 C 0.047 3.953 20 C -0.175 4.175 21 C -0.139 4.139 22 C 0.068 3.932 23 F -0.112 7.112 24 C -0.173 4.173 25 C 0.080 3.920 26 F -0.099 7.099 27 C -0.132 4.132 28 C -0.029 4.029 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.163 0.837 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.218 0.782 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.173 0.827 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 19.722 -18.434 -4.242 27.327 hybrid contribution 1.732 1.951 0.289 2.624 sum 21.453 -16.483 -3.953 27.342 Atomic orbital electron populations 1.69834 1.06111 1.26866 1.49814 1.24856 0.94726 0.98510 0.94698 0.86679 0.79870 0.83504 0.78378 1.20476 1.21622 1.19396 1.20035 0.89187 0.91640 1.49826 1.19682 0.96932 0.94904 0.93449 1.22233 0.96159 0.97531 1.01397 1.21522 0.96642 0.89681 0.93018 0.91802 1.60701 1.25496 1.38357 1.06941 1.22474 0.92737 0.97040 0.97491 1.22053 0.93783 0.92623 0.86322 0.86302 1.86695 1.61504 1.52414 1.34602 1.23780 0.98586 0.91007 0.91720 1.86264 1.40170 1.49105 1.44783 1.19083 0.89344 0.93070 0.93827 1.21055 0.97056 1.02866 0.96555 1.21031 0.97208 0.95495 1.00152 1.17148 0.86661 0.94589 0.94814 1.91532 1.50620 1.75412 1.93601 1.20914 0.95564 1.02489 0.98285 1.16547 0.93790 0.98148 0.83557 1.91563 1.79595 1.94159 1.44631 1.21589 0.92293 0.98194 1.01119 1.19405 0.98688 0.92818 0.92008 0.92606 0.95410 0.96718 0.95607 0.92792 0.83736 0.90180 0.94864 0.78222 0.91257 0.90417 0.83305 0.83601 0.82725 0.93326 0.94476 0.92375 0.97983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 12.73 55.43 0.71 -24.71 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 20.89 27.27 -169.99 -4.64 16.25 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.12 6.46 56.52 0.37 -5.75 16 7 C -0.49 -12.62 5.51 -98.92 -0.55 -13.16 16 8 C -0.01 -0.26 5.59 -27.49 -0.15 -0.41 16 9 C -0.13 -2.54 5.20 -26.63 -0.14 -2.68 16 10 C 0.10 1.80 2.36 -67.76 -0.16 1.64 16 11 H 0.06 1.17 7.80 -51.93 -0.40 0.77 16 12 N -0.68 -10.19 6.24 -106.77 -0.67 -10.86 16 13 C 0.03 0.37 5.15 -3.83 -0.02 0.35 16 14 C 0.11 1.12 3.49 -26.73 -0.09 1.03 16 15 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 16 O -0.55 -6.09 12.82 -40.09 -0.51 -6.60 16 17 C 0.02 0.20 4.37 37.16 0.16 0.36 16 18 O -0.29 -3.03 9.97 -24.60 -0.25 -3.27 16 19 C 0.09 0.86 6.69 -39.19 -0.26 0.60 16 20 C -0.16 -1.05 9.04 -39.45 -0.36 -1.40 16 21 C -0.12 -0.75 10.02 -39.52 -0.40 -1.15 16 22 C 0.09 0.65 7.30 -39.43 -0.29 0.36 16 23 F -0.13 -1.07 17.27 2.25 0.04 -1.03 16 24 C -0.15 -1.17 10.00 -39.47 -0.39 -1.56 16 25 C 0.10 0.94 7.31 -39.31 -0.29 0.66 16 26 F -0.12 -1.36 17.11 2.25 0.04 -1.32 16 27 C -0.09 -1.96 5.54 -26.61 -0.15 -2.11 16 28 C 0.01 0.21 5.97 -27.46 -0.16 0.05 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.03 0.62 4.78 -51.93 -0.25 0.38 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.03 0.42 7.35 -51.93 -0.38 0.04 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.34 5.18 8.04 -39.29 -0.32 4.87 16 35 H 0.08 0.85 8.05 -51.92 -0.42 0.43 16 36 H 0.03 0.35 7.35 -51.93 -0.38 -0.03 16 37 H 0.37 2.85 9.05 45.56 0.41 3.26 16 38 H 0.07 0.42 7.66 -51.93 -0.40 0.02 16 39 H 0.08 0.48 7.66 -51.93 -0.40 0.08 16 40 H 0.15 0.68 6.30 -52.49 -0.33 0.35 16 41 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 46 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -30.03 377.49 -8.72 -38.74 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.79 Total: 2.64 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -3.34 Total: -15.51 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.04 Total: -35.57 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.76 Total: -9.88 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.08 Total: -2.35 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.64 Total: 16.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.03 -8.72 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250874140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.237 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds