Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00210 * 2 1 4 4 H 1.48495 * 109.47333 * 269.99488 * 3 2 1 5 5 H 1.48499 * 109.47030 * 30.00157 * 3 2 1 6 6 H 1.48504 * 109.47075 * 149.99566 * 3 2 1 7 7 C 1.37880 * 119.99833 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84957 * 0.02562 * 7 2 1 9 9 C 1.53226 * 108.53709 * 231.32380 * 8 7 2 10 10 C 1.52966 * 109.40189 * 305.36772 * 9 8 7 11 11 H 1.08996 * 109.41495 * 303.56338 * 10 9 8 12 12 N 1.46896 * 109.41234 * 183.70016 * 10 9 8 13 13 C 1.46906 * 110.99559 * 155.00305 * 12 10 9 14 14 C 1.53001 * 109.46903 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.47175 * 59.99800 * 14 13 12 16 16 O 1.42890 * 109.47174 * 299.99852 * 14 13 12 17 17 C 1.53001 * 109.47003 * 179.97438 * 14 13 12 18 18 O 1.42895 * 109.47193 * 184.99735 * 17 14 13 19 19 C 1.36003 * 117.00450 * 180.02562 * 18 17 14 20 20 C 1.38645 * 120.03474 * 0.22880 * 19 18 17 21 21 C 1.38182 * 119.99249 * 180.28064 * 20 19 18 22 22 C 1.38449 * 120.07209 * 359.74693 * 21 20 19 23 23 F 1.35098 * 119.96709 * 179.97438 * 22 21 20 24 24 C 1.38446 * 120.07479 * 359.97438 * 22 21 20 25 25 C 1.38330 * 120.00477 * 0.02562 * 24 22 21 26 26 F 1.35104 * 120.03552 * 179.97438 * 25 24 22 27 27 C 1.52967 * 109.81170 * 63.60034 * 10 9 8 28 28 C 1.51266 * 120.85120 * 179.97438 * 7 2 1 29 29 H 0.97001 * 119.99488 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.62555 * 111.60347 * 8 7 2 31 31 H 1.09000 * 109.78343 * 351.13197 * 8 7 2 32 32 H 1.08994 * 109.48207 * 185.39605 * 9 8 7 33 33 H 1.08993 * 109.49529 * 65.35367 * 9 8 7 34 34 H 1.00900 * 111.00100 * 31.05855 * 12 10 9 35 35 H 1.09001 * 109.47368 * 60.00301 * 13 12 10 36 36 H 1.09001 * 109.46870 * 300.00005 * 13 12 10 37 37 H 0.96704 * 114.00387 * 299.99891 * 16 14 13 38 38 H 1.09005 * 109.46721 * 65.00368 * 17 14 13 39 39 H 1.08993 * 109.47512 * 305.00369 * 17 14 13 40 40 H 1.08000 * 119.99876 * 0.02562 * 20 19 18 41 41 H 1.07999 * 119.96531 * 179.72655 * 21 20 19 42 42 H 1.08001 * 119.99847 * 179.97438 * 24 22 21 43 43 H 1.08996 * 109.48110 * 56.38518 * 27 10 9 44 44 H 1.09005 * 109.47659 * 176.41953 * 27 10 9 45 45 H 1.09000 * 109.62854 * 248.39713 * 28 7 2 46 46 H 1.09001 * 109.62310 * 8.96708 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 6 1.2676 -2.5152 0.0005 9 6 1.8227 -3.3826 1.1351 10 6 3.3398 -3.5071 0.9839 11 1 3.5738 -3.9113 -0.0010 12 7 3.8611 -4.4100 2.0187 13 6 5.1270 -5.0225 1.5938 14 6 5.6374 -5.9545 2.6946 15 1 4.9001 -6.7356 2.8801 16 8 5.8494 -5.2053 3.8927 17 6 6.9555 -6.5929 2.2518 18 8 7.3726 -7.5500 3.2274 19 6 8.5354 -8.2125 2.9848 20 6 9.2607 -7.9428 1.8344 21 6 10.4390 -8.6206 1.5860 22 6 10.8991 -9.5655 2.4873 23 9 12.0510 -10.2273 2.2420 24 6 10.1801 -9.8329 3.6398 25 6 9.0002 -9.1562 3.8916 26 9 8.2977 -9.4171 5.0158 27 6 3.9906 -2.1311 1.1350 28 6 3.5170 -1.2166 0.0000 29 1 -0.4849 0.8401 -0.0004 30 1 1.4198 -3.0192 -0.9538 31 1 0.2028 -2.3437 0.1582 32 1 1.3705 -4.3732 1.0899 33 1 1.5898 -2.9199 2.0941 34 1 3.1810 -5.1155 2.2591 35 1 5.8642 -4.2414 1.4078 36 1 4.9652 -5.5944 0.6800 37 1 6.4952 -4.4913 3.8011 38 1 7.7178 -5.8202 2.1517 39 1 6.8141 -7.0901 1.2922 40 1 8.9027 -7.2060 1.1306 41 1 11.0014 -8.4134 0.6876 42 1 10.5399 -10.5705 4.3418 43 1 3.7063 -1.6979 2.0939 44 1 5.0747 -2.2348 1.0899 45 1 3.8771 -1.6006 -0.9545 46 1 3.8982 -0.2079 0.1592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250874142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = -162.716519 kcal Electronic energy + Delta-G solvation = -28833.083493 eV Core-core repulsion = 24358.426044 eV Total energy + Delta-G solvation = -4474.657449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.38393 -49.25391 -40.55984 -38.55746 -37.62860 -36.66835 -34.05324 -31.90217 -31.48058 -30.77145 -29.77470 -29.32455 -27.15765 -25.09323 -23.58820 -22.89027 -22.01818 -21.37086 -21.21774 -19.18766 -18.97487 -18.27657 -17.88482 -17.11052 -16.64169 -16.29637 -16.21122 -16.02317 -15.71849 -15.29237 -15.21545 -14.87494 -14.85616 -14.46598 -14.25436 -14.10586 -13.67609 -13.32479 -13.01173 -12.75501 -12.72636 -12.61905 -12.45984 -12.09034 -11.97402 -11.83917 -11.45147 -11.33470 -11.07056 -10.87233 -10.78576 -10.52970 -10.16028 -10.11401 -9.94491 -9.65955 -9.46769 -8.91079 -8.66854 -8.62474 -8.46527 -8.00962 -6.10043 -4.00679 0.39341 0.51026 2.44811 2.81472 3.26534 3.35139 3.35642 3.41120 3.82195 3.96816 4.13244 4.23499 4.32938 4.37912 4.44681 4.57273 4.70206 4.79636 4.92323 4.98783 5.11634 5.20982 5.21713 5.34895 5.44058 5.47610 5.52700 5.69739 5.83922 5.89640 6.04543 6.18464 6.51599 6.64900 6.72626 6.76574 6.79195 6.92816 7.03919 7.10054 7.43093 7.48957 7.58384 7.66442 7.72994 7.76286 7.85453 8.38806 8.96733 9.54544 10.99646 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.001778 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.742298 B =15743.984699 C =16217.827303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.485 4.485 8 C 0.012 3.988 9 C -0.108 4.108 10 C 0.101 3.899 11 H 0.030 0.970 12 N -0.679 5.679 13 C 0.032 3.968 14 C 0.115 3.885 15 H 0.106 0.894 16 O -0.536 6.536 17 C 0.024 3.976 18 O -0.290 6.290 19 C 0.094 3.906 20 C -0.156 4.156 21 C -0.120 4.120 22 C 0.087 3.913 23 F -0.133 7.133 24 C -0.153 4.153 25 C 0.100 3.900 26 F -0.121 7.121 27 C -0.090 4.090 28 C -0.023 4.023 29 H 0.264 0.736 30 H 0.000 1.000 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.336 0.664 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.373 0.627 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.012 0.988 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.451 -18.109 3.727 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.504 4.504 8 C -0.026 4.026 9 C -0.147 4.147 10 C -0.007 4.007 11 H 0.048 0.952 12 N -0.310 5.310 13 C -0.098 4.098 14 C 0.055 3.945 15 H 0.124 0.876 16 O -0.340 6.340 17 C -0.052 4.052 18 O -0.203 6.203 19 C 0.047 3.953 20 C -0.175 4.175 21 C -0.139 4.139 22 C 0.068 3.932 23 F -0.112 7.112 24 C -0.173 4.173 25 C 0.079 3.921 26 F -0.100 7.100 27 C -0.128 4.128 28 C -0.061 4.061 29 H 0.074 0.926 30 H 0.019 0.981 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.220 0.780 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.173 0.827 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.031 0.969 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.005 -17.945 4.517 27.251 hybrid contribution 0.743 0.498 -1.043 1.374 sum 20.748 -17.447 3.474 27.330 Atomic orbital electron populations 1.69837 1.06144 1.26881 1.49998 1.24863 0.94736 0.98601 0.94624 0.86673 0.80040 0.83334 0.78369 1.20540 1.21640 1.18935 1.20020 0.89362 0.91409 1.49632 1.19352 0.98699 0.92985 0.91592 1.21807 0.92556 0.97972 1.02317 1.21488 0.95906 0.92840 0.90489 0.95166 1.60494 1.04712 1.22350 1.43426 1.22523 0.95237 0.96974 0.95065 1.21902 0.93238 0.93090 0.86273 0.87587 1.86667 1.65634 1.48906 1.32810 1.23808 0.98595 0.91127 0.91680 1.86259 1.34979 1.52027 1.47066 1.19087 0.88247 0.93827 0.94167 1.21056 0.96055 1.03059 0.97355 1.21028 0.96928 0.95885 1.00041 1.17147 0.84714 0.95770 0.95581 1.91531 1.46210 1.79211 1.94211 1.20913 0.94609 1.02839 0.98891 1.16547 0.92330 0.98328 0.84848 1.91564 1.77513 1.92832 1.48046 1.21528 0.95847 0.94597 1.00829 1.19854 0.96796 0.95697 0.93722 0.92631 0.98134 0.92381 0.95493 0.92255 0.84558 0.90466 0.94622 0.77995 0.91038 0.90682 0.83302 0.83599 0.82725 0.92394 0.95590 0.96940 0.94718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 12.73 55.43 0.71 -24.82 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 20.93 27.53 -169.99 -4.68 16.25 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.01 6.11 56.52 0.35 -5.67 16 7 C -0.49 -12.62 5.51 -98.92 -0.55 -13.16 16 8 C 0.01 0.28 5.96 -27.49 -0.16 0.12 16 9 C -0.11 -2.23 5.24 -26.63 -0.14 -2.37 16 10 C 0.10 1.84 2.39 -67.75 -0.16 1.68 16 11 H 0.03 0.56 7.80 -51.93 -0.40 0.16 16 12 N -0.68 -10.14 6.17 -106.76 -0.66 -10.80 16 13 C 0.03 0.37 5.14 -3.82 -0.02 0.35 16 14 C 0.12 1.16 3.45 -26.73 -0.09 1.07 16 15 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 16 O -0.54 -6.50 13.17 -40.07 -0.53 -7.02 16 17 C 0.02 0.19 4.38 37.16 0.16 0.35 16 18 O -0.29 -3.03 9.97 -24.59 -0.25 -3.28 16 19 C 0.09 0.86 6.69 -39.19 -0.26 0.60 16 20 C -0.16 -1.05 9.04 -39.45 -0.36 -1.41 16 21 C -0.12 -0.76 10.02 -39.52 -0.40 -1.15 16 22 C 0.09 0.65 7.30 -39.43 -0.29 0.37 16 23 F -0.13 -1.07 17.26 2.25 0.04 -1.04 16 24 C -0.15 -1.17 10.00 -39.47 -0.39 -1.56 16 25 C 0.10 0.94 7.31 -39.31 -0.29 0.66 16 26 F -0.12 -1.36 17.11 2.25 0.04 -1.32 16 27 C -0.09 -1.78 5.45 -26.61 -0.15 -1.93 16 28 C -0.02 -0.52 5.59 -27.47 -0.15 -0.67 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.06 1.57 7.08 -51.93 -0.37 1.20 16 32 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.34 4.80 8.29 -39.29 -0.33 4.47 16 35 H 0.08 0.86 7.35 -51.93 -0.38 0.48 16 36 H 0.04 0.38 8.05 -51.93 -0.42 -0.04 16 37 H 0.37 3.40 9.05 45.56 0.41 3.82 16 38 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16 39 H 0.08 0.46 7.67 -51.93 -0.40 0.06 16 40 H 0.15 0.69 6.30 -52.49 -0.33 0.36 16 41 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.03 0.45 7.35 -51.93 -0.38 0.07 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.03 0.79 4.59 -51.93 -0.24 0.55 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -30.37 377.59 -8.78 -39.15 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.80 Total: 2.35 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -3.34 Total: -15.15 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.05 Total: -35.63 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.77 Total: -10.30 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.08 Total: -2.36 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.68 Total: 16.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.37 -8.78 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250874142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.568 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds