Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99862 * 2 1 4 4 H 1.48499 * 109.47362 * 174.66065 * 3 2 1 5 5 H 1.48508 * 109.47179 * 294.65821 * 3 2 1 6 6 H 1.48494 * 109.47607 * 54.65852 * 3 2 1 7 7 C 1.37869 * 120.00258 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.85475 * 169.12515 * 7 2 1 9 9 C 1.53233 * 108.53750 * 128.62827 * 8 7 2 10 10 C 1.52959 * 109.40372 * 54.63318 * 9 8 7 11 11 H 1.08999 * 109.36002 * 56.46763 * 10 9 8 12 12 N 1.46900 * 109.41543 * 176.29620 * 10 9 8 13 13 C 1.46895 * 110.99840 * 275.35137 * 12 10 9 14 14 C 1.53002 * 109.47520 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.47232 * 59.99513 * 14 13 12 16 16 O 1.42901 * 109.46758 * 300.00360 * 14 13 12 17 17 C 1.52997 * 109.47605 * 180.02562 * 14 13 12 18 18 O 1.42897 * 109.47150 * 184.99826 * 17 14 13 19 19 C 1.35997 * 116.99792 * 179.97438 * 18 17 14 20 20 C 1.38637 * 120.03947 * 0.27238 * 19 18 17 21 21 C 1.38189 * 119.99170 * 180.27840 * 20 19 18 22 22 C 1.38455 * 120.07204 * 359.44848 * 21 20 19 23 23 F 1.35102 * 119.96554 * 180.25256 * 22 21 20 24 24 C 1.38449 * 120.07345 * 0.27677 * 22 21 20 25 25 C 1.38334 * 120.00313 * 0.02562 * 24 22 21 26 26 F 1.35102 * 120.03165 * 180.02562 * 25 24 22 27 27 C 1.52963 * 109.81446 * 296.40222 * 10 9 8 28 28 C 1.51279 * 120.84957 * 349.10154 * 7 2 1 29 29 H 0.96994 * 120.00003 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.62695 * 248.34481 * 8 7 2 31 31 H 1.09000 * 109.62268 * 8.72995 * 8 7 2 32 32 H 1.09007 * 109.48643 * 294.65356 * 9 8 7 33 33 H 1.08996 * 109.48338 * 174.61090 * 9 8 7 34 34 H 1.00898 * 111.00203 * 151.40075 * 12 10 9 35 35 H 1.09004 * 109.47073 * 59.99940 * 13 12 10 36 36 H 1.09002 * 109.47601 * 299.99887 * 13 12 10 37 37 H 0.96701 * 113.99859 * 299.99785 * 16 14 13 38 38 H 1.08997 * 109.46950 * 64.99528 * 17 14 13 39 39 H 1.09004 * 109.46411 * 304.99731 * 17 14 13 40 40 H 1.07998 * 120.00141 * 0.02562 * 20 19 18 41 41 H 1.08003 * 119.96237 * 179.72865 * 21 20 19 42 42 H 1.07998 * 119.99682 * 179.97438 * 24 22 21 43 43 H 1.08999 * 109.48022 * 183.57732 * 27 10 9 44 44 H 1.08998 * 109.48120 * 303.59836 * 27 10 9 45 45 H 1.09006 * 109.62155 * 111.65553 * 28 7 2 46 46 H 1.09004 * 109.77891 * 351.18242 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7039 1.3495 0.1303 5 1 1.9908 2.3385 -1.2725 6 1 1.7954 2.4514 1.1420 7 6 2.0046 -1.1939 -0.0005 8 6 3.4969 -1.2280 -0.2455 9 6 4.1567 -2.0351 0.8775 10 6 3.5008 -3.4142 0.9651 11 1 3.5739 -3.9111 -0.0022 12 7 4.1912 -4.2196 1.9812 13 6 5.3754 -4.8790 1.4150 14 6 6.0661 -5.7071 2.5004 15 1 5.3752 -6.4615 2.8766 16 8 6.4649 -4.8499 3.5719 17 6 7.2999 -6.3934 1.9107 18 8 7.8783 -7.2576 2.8908 19 6 8.9909 -7.9488 2.5249 20 6 9.5169 -7.7935 1.2517 21 6 10.6442 -8.5007 0.8790 22 6 11.2559 -9.3560 1.7797 23 9 12.3608 -10.0424 1.4147 24 6 10.7363 -9.5089 3.0538 25 6 9.6044 -8.8073 3.4281 26 9 9.0972 -8.9557 4.6715 27 6 2.0279 -3.2644 1.3496 28 6 1.2881 -2.5036 0.2444 29 1 -0.4850 0.8400 0.0004 30 1 3.6996 -1.7029 -1.2054 31 1 3.8905 -0.2115 -0.2495 32 1 4.0294 -1.5112 1.8249 33 1 5.2196 -2.1509 0.6659 34 1 3.5651 -4.8940 2.3949 35 1 6.0662 -4.1245 1.0383 36 1 5.0712 -5.5332 0.5979 37 1 7.0815 -4.1528 3.3093 38 1 8.0291 -5.6390 1.6158 39 1 7.0082 -6.9777 1.0379 40 1 9.0434 -7.1230 0.5498 41 1 11.0510 -8.3826 -0.1145 42 1 11.2142 -10.1767 3.7552 43 1 1.5821 -4.2514 1.4725 44 1 1.9510 -2.7117 2.2859 45 1 1.2863 -3.0965 -0.6702 46 1 0.2619 -2.3097 0.5571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250874144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = -160.915071 kcal Electronic energy + Delta-G solvation = -28837.871290 eV Core-core repulsion = 24363.291958 eV Total energy + Delta-G solvation = -4474.579332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.38317 -49.25535 -40.56129 -38.55900 -37.63013 -36.67002 -34.05347 -31.90988 -31.48110 -30.77459 -29.77720 -29.33039 -27.15741 -25.09069 -23.58808 -22.89018 -22.02044 -21.37227 -21.21819 -19.19952 -18.97674 -18.27759 -17.88542 -17.11186 -16.64443 -16.29623 -16.21522 -16.02755 -15.71971 -15.29616 -15.21775 -14.87344 -14.85659 -14.48210 -14.25507 -14.11128 -13.68309 -13.33290 -13.01081 -12.75074 -12.71345 -12.61022 -12.45577 -12.10335 -11.99470 -11.85884 -11.48149 -11.34498 -11.07952 -10.86248 -10.81776 -10.51575 -10.16705 -10.10498 -9.94605 -9.65983 -9.36586 -8.92901 -8.65213 -8.62518 -8.40906 -8.00784 -6.11646 -4.00061 0.39273 0.50972 2.44716 2.81408 3.25857 3.35920 3.36405 3.41044 3.82124 3.96739 4.13065 4.23426 4.32852 4.38431 4.44623 4.57119 4.70067 4.79484 4.92108 4.98668 5.11418 5.19776 5.21664 5.34828 5.44012 5.47564 5.52646 5.69169 5.83758 5.89953 6.04473 6.18518 6.51373 6.65233 6.72306 6.76513 6.78423 6.93713 7.03189 7.14980 7.44055 7.49015 7.58093 7.65471 7.74004 7.76031 7.84588 8.38774 8.96233 9.54710 10.98109 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025424 B = 0.001778 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.061824 B =15741.915661 C =16148.154940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.256 1.256 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.486 4.486 8 C -0.027 4.027 9 C -0.090 4.090 10 C 0.101 3.899 11 H 0.031 0.969 12 N -0.679 5.679 13 C 0.032 3.968 14 C 0.115 3.885 15 H 0.106 0.894 16 O -0.536 6.536 17 C 0.024 3.976 18 O -0.290 6.290 19 C 0.094 3.906 20 C -0.156 4.156 21 C -0.120 4.120 22 C 0.087 3.913 23 F -0.133 7.133 24 C -0.153 4.153 25 C 0.100 3.900 26 F -0.121 7.121 27 C -0.109 4.109 28 C 0.014 3.986 29 H 0.263 0.737 30 H 0.012 0.988 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.336 0.664 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.373 0.627 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.027 0.973 44 H 0.058 0.942 45 H 0.001 0.999 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.013 -17.761 2.491 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.127 4.127 3 Si 0.707 3.293 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.505 4.505 8 C -0.065 4.065 9 C -0.129 4.129 10 C -0.007 4.007 11 H 0.049 0.951 12 N -0.310 5.310 13 C -0.098 4.098 14 C 0.055 3.945 15 H 0.124 0.876 16 O -0.340 6.340 17 C -0.052 4.052 18 O -0.203 6.203 19 C 0.047 3.953 20 C -0.175 4.175 21 C -0.139 4.139 22 C 0.068 3.932 23 F -0.112 7.112 24 C -0.173 4.173 25 C 0.079 3.921 26 F -0.100 7.100 27 C -0.148 4.148 28 C -0.024 4.024 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.154 0.846 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.220 0.780 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.173 0.827 43 H 0.046 0.954 44 H 0.077 0.923 45 H 0.019 0.981 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 20.699 -17.523 3.306 27.321 hybrid contribution 0.531 0.390 -1.018 1.212 sum 21.230 -17.133 2.289 27.377 Atomic orbital electron populations 1.69900 1.06242 1.26837 1.49515 1.24857 0.94637 0.98632 0.94622 0.86750 0.81106 0.83714 0.77725 1.18087 1.21045 1.21194 1.20007 0.90890 0.91864 1.47740 1.19975 0.96197 0.96554 0.93740 1.21542 0.95771 0.94793 1.00773 1.21485 0.94318 0.93889 0.91021 0.95148 1.60496 1.09169 1.27213 1.34119 1.22520 0.95387 0.97026 0.94861 1.21905 0.92400 0.91642 0.88557 0.87585 1.86668 1.67308 1.45678 1.34377 1.23806 0.96796 0.93055 0.91552 1.86259 1.38062 1.55342 1.40666 1.19084 0.89168 0.93982 0.93095 1.21056 0.98158 1.03067 0.95244 1.21032 0.96077 0.96364 1.00406 1.17150 0.86560 0.96177 0.93326 1.91532 1.50054 1.77752 1.91825 1.20914 0.96587 1.02731 0.97019 1.16549 0.94968 0.99727 0.80813 1.91563 1.86287 1.94420 1.37687 1.21825 0.93135 0.98063 1.01729 1.19330 0.97357 0.93571 0.92179 0.92700 0.96957 0.94115 0.92478 0.95628 0.84577 0.90460 0.94620 0.77997 0.91030 0.90681 0.83299 0.83596 0.82726 0.95444 0.92320 0.98054 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 12.83 55.43 0.71 -24.74 16 2 C 0.08 2.04 5.44 -17.82 -0.10 1.94 16 3 Si 0.88 20.66 27.95 -169.99 -4.75 15.91 16 4 H -0.26 -5.73 5.58 56.52 0.32 -5.41 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.49 -12.63 5.48 -98.92 -0.54 -13.17 16 8 C -0.03 -0.61 5.65 -27.49 -0.16 -0.77 16 9 C -0.09 -1.79 5.45 -26.63 -0.15 -1.94 16 10 C 0.10 1.84 2.39 -67.75 -0.16 1.68 16 11 H 0.03 0.57 7.80 -51.93 -0.40 0.16 16 12 N -0.68 -10.11 6.17 -106.77 -0.66 -10.77 16 13 C 0.03 0.37 5.14 -3.83 -0.02 0.35 16 14 C 0.12 1.16 3.46 -26.73 -0.09 1.07 16 15 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 16 O -0.54 -6.48 13.17 -40.11 -0.53 -7.01 16 17 C 0.02 0.19 4.37 37.16 0.16 0.35 16 18 O -0.29 -3.03 9.97 -24.61 -0.25 -3.28 16 19 C 0.09 0.86 6.69 -39.19 -0.26 0.60 16 20 C -0.16 -1.05 9.04 -39.45 -0.36 -1.41 16 21 C -0.12 -0.75 10.02 -39.52 -0.40 -1.15 16 22 C 0.09 0.65 7.30 -39.42 -0.29 0.37 16 23 F -0.13 -1.07 17.27 2.25 0.04 -1.03 16 24 C -0.15 -1.17 10.00 -39.47 -0.39 -1.56 16 25 C 0.10 0.94 7.31 -39.30 -0.29 0.66 16 26 F -0.12 -1.36 17.11 2.25 0.04 -1.32 16 27 C -0.11 -2.24 5.24 -26.64 -0.14 -2.38 16 28 C 0.01 0.33 5.92 -27.49 -0.16 0.17 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.93 4.35 -51.93 -0.23 0.71 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.03 0.45 7.35 -51.93 -0.38 0.07 16 34 H 0.34 4.78 8.29 -39.29 -0.33 4.45 16 35 H 0.08 0.86 7.35 -51.93 -0.38 0.48 16 36 H 0.04 0.38 8.05 -51.93 -0.42 -0.04 16 37 H 0.37 3.39 9.04 45.56 0.41 3.80 16 38 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16 39 H 0.08 0.46 7.67 -51.93 -0.40 0.06 16 40 H 0.15 0.69 6.30 -52.49 -0.33 0.36 16 41 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 42 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 46 H 0.05 1.47 7.20 -51.93 -0.37 1.10 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -30.40 377.41 -8.87 -39.27 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.83 Total: 2.48 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -3.34 Total: -15.20 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.05 Total: -35.51 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.77 Total: -10.28 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.08 Total: -2.35 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.75 Total: 15.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.40 -8.87 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250874144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.646 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds