Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47349 * 300.00067 * 3 2 1 6 6 H 1.48505 * 109.47162 * 60.00262 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21553 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.47862 * 119.99780 * 180.02562 * 14 13 12 17 17 C 1.39655 * 120.09059 * 0.02562 * 16 14 13 18 18 C 1.38017 * 120.09827 * 180.02562 * 17 16 14 19 19 C 1.38166 * 120.27231 * 359.97438 * 18 17 16 20 20 C 1.39407 * 120.16965 * 0.03023 * 19 18 17 21 21 C 1.48426 * 120.04420 * 179.97438 * 20 19 18 22 22 N 1.33967 * 125.65196 * 0.02562 * 21 20 19 23 23 C 1.30680 * 109.78272 * 179.97438 * 22 21 20 24 24 N 1.34526 * 108.29082 * 0.02562 * 23 22 21 25 25 H 0.96996 * 126.74117 * 180.02562 * 24 23 22 26 26 N 1.31486 * 125.64732 * 179.68981 * 21 20 19 27 27 C 1.39090 * 119.90472 * 359.67414 * 20 19 18 28 28 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 29 29 C 1.52995 * 117.49555 * 128.74822 * 28 10 9 30 30 C 1.52995 * 117.49792 * 60.09061 * 28 10 9 31 31 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 34 34 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 35 35 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 36 36 H 1.08000 * 119.95086 * 0.02562 * 17 16 14 37 37 H 1.08004 * 119.86341 * 180.02562 * 18 17 16 38 38 H 1.07994 * 119.90879 * 180.02562 * 19 18 17 39 39 H 1.07995 * 125.85682 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.13660 * 180.29681 * 27 20 19 41 41 H 1.08997 * 115.54853 * 274.41548 * 28 10 9 42 42 H 1.08998 * 117.49984 * 359.97438 * 29 28 10 43 43 H 1.09006 * 117.49830 * 145.02021 * 29 28 10 44 44 H 1.09000 * 117.49832 * 214.98051 * 30 28 10 45 45 H 1.09004 * 117.49814 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3951 -6.2262 2.2261 16 6 -0.5056 -4.7270 4.0153 17 6 -0.1158 -3.4881 4.5288 18 6 -0.5364 -3.0955 5.7833 19 6 -1.3449 -3.9238 6.5378 20 6 -1.7407 -5.1628 6.0363 21 6 -2.6087 -6.0507 6.8495 22 7 -3.0770 -5.7764 8.0743 23 6 -3.8088 -6.7714 8.5011 24 7 -3.8276 -7.7208 7.5482 25 1 -4.2908 -8.5722 7.5864 26 7 -3.0506 -7.2340 6.4844 27 6 -1.3261 -5.5632 4.7704 28 6 2.4221 -4.0355 -1.4376 29 6 3.8823 -4.3890 -1.7268 30 6 3.3029 -3.0621 -2.2233 31 1 -0.4850 0.8400 0.0004 32 1 0.3557 -2.3880 -0.0005 33 1 0.3135 -4.9201 -0.0291 34 1 1.7560 -5.6746 0.6908 35 1 1.0066 -3.4751 2.2963 36 1 0.5157 -2.8364 3.9433 37 1 -0.2330 -2.1364 6.1764 38 1 -1.6709 -3.6104 7.5185 39 1 -4.3122 -6.8228 9.4551 40 1 -1.6344 -6.5203 4.3764 41 1 1.6542 -4.5774 -1.9897 42 1 4.5838 -4.3513 -0.8934 43 1 4.0751 -5.1632 -2.4696 44 1 3.1147 -2.9637 -3.2924 45 1 3.6228 -2.1515 -1.7166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265366252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 115.868194 kcal Electronic energy + Delta-G solvation = -28166.932709 eV Core-core repulsion = 24187.337537 eV Total energy + Delta-G solvation = -3979.595171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.33527 -39.95823 -38.31768 -37.41634 -34.68611 -33.59548 -33.26730 -32.11370 -31.42643 -30.69867 -30.01718 -27.97501 -24.49945 -24.07822 -23.43495 -22.65010 -21.80467 -21.64224 -21.11676 -20.00675 -19.42104 -18.72896 -17.69623 -17.07730 -16.09932 -15.82602 -15.75785 -15.39884 -15.20123 -14.90390 -14.81894 -14.36127 -14.16384 -13.84868 -13.63715 -13.53238 -13.16068 -12.88920 -12.72385 -12.45179 -12.04736 -11.77569 -11.39051 -11.30246 -11.16225 -10.89429 -10.86851 -10.73680 -10.70742 -10.38876 -10.26568 -10.10711 -9.94750 -9.76091 -9.48854 -9.30218 -9.01663 -9.00181 -8.71895 -8.55766 -7.06393 -5.82976 -3.12839 0.65141 1.05729 1.53080 2.31706 2.62073 3.22429 3.37932 3.43876 3.45268 3.46839 3.74853 3.99786 4.29922 4.40771 4.58406 4.59879 4.85831 4.94556 5.10335 5.22110 5.24365 5.43793 5.47224 5.51660 5.58997 5.61386 5.75847 5.85050 5.88763 5.90680 5.99772 6.00890 6.07753 6.17862 6.30445 6.33932 6.39057 6.42670 6.54377 6.60022 6.68752 6.76063 6.77889 6.90876 6.97751 7.64210 7.71748 7.92906 8.33556 8.55274 9.45960 10.00000 10.36347 11.38650 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.002516 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.480321 B =11125.979529 C =12753.162002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.056 0.944 12 C 0.119 3.881 13 N -0.706 5.706 14 C 0.555 3.445 15 O -0.549 6.549 16 C -0.133 4.133 17 C -0.061 4.061 18 C -0.129 4.129 19 C -0.053 4.053 20 C -0.035 4.035 21 C 0.276 3.724 22 N -0.536 5.536 23 C 0.263 3.737 24 N -0.485 5.485 25 H 0.443 0.557 26 N -0.301 5.301 27 C -0.026 4.026 28 C -0.159 4.159 29 C -0.196 4.196 30 C -0.156 4.156 31 H 0.255 0.745 32 H 0.386 0.614 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.225 0.775 40 H 0.143 0.857 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.819 -12.640 15.590 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.005 4.005 13 N -0.358 5.358 14 C 0.342 3.658 15 O -0.429 6.429 16 C -0.136 4.136 17 C -0.081 4.081 18 C -0.147 4.147 19 C -0.074 4.074 20 C -0.038 4.038 21 C -0.004 4.004 22 N -0.263 5.263 23 C -0.036 4.036 24 N -0.203 5.203 25 H 0.289 0.711 26 N -0.130 5.130 27 C -0.047 4.047 28 C -0.181 4.181 29 C -0.234 4.234 30 C -0.193 4.193 31 H 0.065 0.935 32 H 0.220 0.780 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.248 0.752 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.241 0.759 40 H 0.160 0.840 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.705 -13.255 14.783 20.197 hybrid contribution -0.337 0.797 0.240 0.898 sum -4.042 -12.457 15.023 19.930 Atomic orbital electron populations 1.69670 1.05018 1.25596 1.57209 1.24722 0.95427 0.97545 1.02871 0.86206 0.78813 0.84451 0.77216 1.20603 1.21953 1.21897 1.19192 0.90841 0.83800 1.42986 0.91081 1.42472 1.05853 0.99404 1.88079 1.20068 0.94343 0.86126 0.91291 0.92633 1.21627 0.98692 0.97605 0.82625 1.45884 1.50297 1.21703 1.17885 1.18150 0.78672 0.84328 0.84642 1.90741 1.57302 1.22540 1.72275 1.19894 1.02085 0.96082 0.95554 1.21654 0.96616 0.94397 0.95387 1.21091 0.98825 1.00366 0.94465 1.21362 0.94376 0.91734 0.99887 1.17293 0.99553 0.93723 0.93228 1.22283 0.96668 0.90918 0.90500 1.70503 1.16133 1.28049 1.11648 1.26098 0.96430 0.84751 0.96338 1.48141 1.40468 1.18986 1.12741 0.71133 1.78328 1.12899 1.13071 1.08719 1.21240 0.92718 0.99360 0.91372 1.23022 0.92176 1.03075 0.99784 1.22963 0.97288 0.99808 1.03361 1.22784 1.03401 0.94056 0.99102 0.93506 0.78010 0.91620 0.91470 0.75244 0.84455 0.84542 0.84406 0.75907 0.83963 0.89113 0.89530 0.90091 0.90231 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.31 13.06 55.49 0.72 -25.59 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 21.18 29.55 -169.99 -5.02 16.15 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.24 -5.89 8.63 -15.06 -0.13 -6.02 16 8 H 0.07 1.74 6.91 -52.48 -0.36 1.37 16 9 N -0.72 -16.04 4.54 -53.42 -0.24 -16.28 16 10 C 0.19 3.51 2.70 -67.92 -0.18 3.33 16 11 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 12 C 0.12 2.03 5.21 -4.04 -0.02 2.01 16 13 N -0.71 -11.90 5.34 -61.24 -0.33 -12.22 16 14 C 0.56 9.75 7.77 -12.32 -0.10 9.66 16 15 O -0.55 -11.14 16.34 5.32 0.09 -11.06 16 16 C -0.13 -2.04 5.87 -105.01 -0.62 -2.65 16 17 C -0.06 -0.82 9.54 -39.13 -0.37 -1.19 16 18 C -0.13 -1.50 10.02 -39.69 -0.40 -1.90 16 19 C -0.05 -0.63 9.68 -39.17 -0.38 -1.01 16 20 C -0.04 -0.48 5.87 -104.95 -0.62 -1.10 16 21 C 0.28 3.63 7.77 -156.64 -1.22 2.42 16 22 N -0.54 -6.00 10.81 -12.38 -0.13 -6.13 16 23 C 0.26 1.79 13.11 -90.69 -1.19 0.60 16 24 N -0.49 -3.64 7.44 29.52 0.22 -3.42 16 25 H 0.44 1.53 8.96 -182.34 -1.63 -0.10 16 26 N -0.30 -3.81 12.42 32.10 0.40 -3.41 16 27 C -0.03 -0.39 9.22 -38.84 -0.36 -0.75 16 28 C -0.16 -2.74 5.36 -90.62 -0.49 -3.22 16 29 C -0.20 -2.96 10.18 -26.70 -0.27 -3.23 16 30 C -0.16 -2.74 9.78 -26.70 -0.26 -3.00 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.39 9.53 7.80 -40.82 -0.32 9.21 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.41 6.79 6.16 -40.82 -0.25 6.53 16 36 H 0.14 1.78 6.39 -52.49 -0.34 1.44 16 37 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.14 1.43 7.82 -52.49 -0.41 1.02 16 39 H 0.22 0.26 8.06 -52.49 -0.42 -0.16 16 40 H 0.14 2.26 7.42 -52.49 -0.39 1.87 16 41 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 42 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.10 2.06 6.23 -51.93 -0.32 1.73 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -33.53 385.73 -12.12 -45.65 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -6.94 Total: 16.90 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -6.69 Total: -6.40 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: 0.64 Total: -67.06 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.53 -12.12 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265366252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.520 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds