Wall clock time and date at job start Sat Apr 11 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47349 * 300.00067 * 3 2 1 6 6 H 1.48505 * 109.47162 * 60.00262 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21553 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.47862 * 119.99780 * 180.02562 * 14 13 12 17 17 C 1.39655 * 120.09059 * 0.02562 * 16 14 13 18 18 C 1.38017 * 120.09827 * 180.02562 * 17 16 14 19 19 C 1.38166 * 120.27231 * 359.97438 * 18 17 16 20 20 C 1.39407 * 120.16965 * 0.03023 * 19 18 17 21 21 C 1.48426 * 120.04420 * 179.97438 * 20 19 18 22 22 N 1.33967 * 125.65196 * 0.02562 * 21 20 19 23 23 C 1.30680 * 109.78272 * 179.97438 * 22 21 20 24 24 N 1.34526 * 108.29082 * 0.02562 * 23 22 21 25 25 H 0.96996 * 126.74117 * 180.02562 * 24 23 22 26 26 N 1.31486 * 125.64732 * 179.68981 * 21 20 19 27 27 C 1.39090 * 119.90472 * 359.67414 * 20 19 18 28 28 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 29 29 C 1.52995 * 117.49555 * 128.74822 * 28 10 9 30 30 C 1.52995 * 117.49792 * 60.09061 * 28 10 9 31 31 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 34 34 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 35 35 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 36 36 H 1.08000 * 119.95086 * 0.02562 * 17 16 14 37 37 H 1.08004 * 119.86341 * 180.02562 * 18 17 16 38 38 H 1.07994 * 119.90879 * 180.02562 * 19 18 17 39 39 H 1.07995 * 125.85682 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.13660 * 180.29681 * 27 20 19 41 41 H 1.08997 * 115.54853 * 274.41548 * 28 10 9 42 42 H 1.08998 * 117.49984 * 359.97438 * 29 28 10 43 43 H 1.09006 * 117.49830 * 145.02021 * 29 28 10 44 44 H 1.09000 * 117.49832 * 214.98051 * 30 28 10 45 45 H 1.09004 * 117.49814 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3951 -6.2262 2.2261 16 6 -0.5056 -4.7270 4.0153 17 6 -0.1158 -3.4881 4.5288 18 6 -0.5364 -3.0955 5.7833 19 6 -1.3449 -3.9238 6.5378 20 6 -1.7407 -5.1628 6.0363 21 6 -2.6087 -6.0507 6.8495 22 7 -3.0770 -5.7764 8.0743 23 6 -3.8088 -6.7714 8.5011 24 7 -3.8276 -7.7208 7.5482 25 1 -4.2908 -8.5722 7.5864 26 7 -3.0506 -7.2340 6.4844 27 6 -1.3261 -5.5632 4.7704 28 6 2.4221 -4.0355 -1.4376 29 6 3.8823 -4.3890 -1.7268 30 6 3.3029 -3.0621 -2.2233 31 1 -0.4850 0.8400 0.0004 32 1 0.3557 -2.3880 -0.0005 33 1 0.3135 -4.9201 -0.0291 34 1 1.7560 -5.6746 0.6908 35 1 1.0066 -3.4751 2.2963 36 1 0.5157 -2.8364 3.9433 37 1 -0.2330 -2.1364 6.1764 38 1 -1.6709 -3.6104 7.5185 39 1 -4.3122 -6.8228 9.4551 40 1 -1.6344 -6.5203 4.3764 41 1 1.6542 -4.5774 -1.9897 42 1 4.5838 -4.3513 -0.8934 43 1 4.0751 -5.1632 -2.4696 44 1 3.1147 -2.9637 -3.2924 45 1 3.6228 -2.1515 -1.7166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265366252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:53 Heat of formation + Delta-G solvation = 94.926023 kcal Electronic energy + Delta-G solvation = -28167.840829 eV Core-core repulsion = 24187.337537 eV Total energy + Delta-G solvation = -3980.503292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -43.06712 -41.23018 -39.54933 -38.83497 -36.13958 -35.20412 -34.27329 -32.96924 -32.80165 -32.07605 -30.97984 -29.56976 -25.96164 -25.04701 -24.94735 -23.71685 -23.01753 -22.81406 -22.17386 -21.36305 -20.69384 -19.59402 -19.15993 -18.48823 -17.33859 -16.98156 -16.83491 -16.51615 -16.34984 -16.24457 -16.01875 -15.87669 -15.34535 -15.20663 -14.96159 -14.84039 -14.64493 -14.23980 -13.93365 -13.53760 -13.18664 -12.96737 -12.88910 -12.80259 -12.68608 -12.38754 -12.32274 -12.23116 -11.92576 -11.70257 -11.53503 -11.21430 -11.13759 -11.05339 -10.98573 -10.85067 -10.74239 -10.20606 -9.92561 -9.64193 -8.96992 -7.84891 -5.12860 -0.35191 -0.01740 0.81689 1.51326 1.54088 1.61360 1.66834 1.74126 2.08069 2.16750 2.60775 2.89288 2.97163 3.10002 3.50287 3.54862 3.71466 3.79106 3.91120 3.99902 4.02602 4.17822 4.19240 4.23727 4.36772 4.41230 4.46144 4.55552 4.64857 4.70758 4.86984 4.89477 4.92167 5.07031 5.11692 5.16619 5.18004 5.27824 5.35593 5.41968 5.42359 5.47108 5.52027 5.65601 5.77682 6.23454 6.34167 6.54134 6.99395 7.16324 7.42724 8.12736 8.38957 9.37861 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.002516 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.480321 B =11125.979529 C =12753.162002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.305 1.305 6 H -0.296 1.296 7 C -0.215 4.215 8 H 0.078 0.922 9 N -0.723 5.723 10 C 0.197 3.803 11 H 0.061 0.939 12 C 0.126 3.874 13 N -0.702 5.702 14 C 0.554 3.446 15 O -0.584 6.584 16 C -0.149 4.149 17 C -0.065 4.065 18 C -0.119 4.119 19 C -0.044 4.044 20 C -0.040 4.040 21 C 0.256 3.744 22 N -0.565 5.565 23 C 0.283 3.717 24 N -0.473 5.473 25 H 0.460 0.540 26 N -0.342 5.342 27 C -0.038 4.038 28 C -0.174 4.174 29 C -0.162 4.162 30 C -0.173 4.173 31 H 0.247 0.753 32 H 0.372 0.628 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.412 0.588 36 H 0.140 0.860 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.282 0.718 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 -13.037 17.585 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.261 4.261 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.233 1.233 6 H -0.223 1.223 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.363 5.363 10 C 0.089 3.911 11 H 0.079 0.921 12 C 0.002 3.998 13 N -0.353 5.353 14 C 0.342 3.658 15 O -0.466 6.466 16 C -0.152 4.152 17 C -0.085 4.085 18 C -0.137 4.137 19 C -0.064 4.064 20 C -0.043 4.043 21 C -0.023 4.023 22 N -0.294 5.294 23 C -0.014 4.014 24 N -0.193 5.193 25 H 0.309 0.691 26 N -0.172 5.172 27 C -0.059 4.059 28 C -0.195 4.195 29 C -0.200 4.200 30 C -0.211 4.211 31 H 0.056 0.944 32 H 0.204 0.796 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.158 0.842 37 H 0.185 0.815 38 H 0.176 0.824 39 H 0.297 0.703 40 H 0.141 0.859 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.104 0.896 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.899 -13.701 16.783 21.859 hybrid contribution -0.610 0.771 -0.287 1.024 sum -3.509 -12.930 16.496 21.251 Atomic orbital electron populations 1.69816 1.06375 1.25480 1.59993 1.25344 0.96019 1.00311 1.04467 0.85291 0.78448 0.81130 0.76193 1.19144 1.23272 1.22340 1.19470 0.91125 0.84448 1.39661 0.90414 1.42577 1.05297 1.00360 1.88026 1.20152 0.94077 0.84650 0.92269 0.92117 1.21540 0.98079 0.97722 0.82462 1.45852 1.50097 1.21641 1.17710 1.18524 0.78080 0.83786 0.85403 1.90709 1.58628 1.23986 1.73261 1.19756 1.03452 0.97328 0.94691 1.21729 0.96858 0.93588 0.96305 1.21421 0.97630 1.01273 0.93362 1.21611 0.93478 0.90811 1.00484 1.17482 0.99486 0.94601 0.92733 1.22256 0.97411 0.91191 0.91490 1.70470 1.17749 1.30084 1.11065 1.27168 0.94260 0.82852 0.97161 1.48070 1.39620 1.19891 1.11747 0.69066 1.78220 1.14312 1.13489 1.11211 1.21109 0.93593 0.98854 0.92362 1.22916 0.93979 1.03975 0.98666 1.23037 0.95133 0.98317 1.03504 1.22743 1.04698 0.94334 0.99279 0.94421 0.79551 0.92994 0.90051 0.75006 0.84201 0.81467 0.82432 0.70302 0.85854 0.88944 0.88490 0.87623 0.89639 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.94 13.06 21.65 0.28 -55.66 16 2 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 3 Si 0.96 43.82 29.55 68.60 2.03 45.85 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 7 C -0.22 -10.64 8.63 84.03 0.73 -9.92 16 8 H 0.08 3.71 6.91 -2.91 -0.02 3.69 16 9 N -0.72 -32.51 4.54 -322.94 -1.47 -33.98 16 10 C 0.20 7.09 2.70 44.99 0.12 7.21 16 11 H 0.06 2.14 7.84 -2.39 -0.02 2.13 16 12 C 0.13 4.33 5.21 86.38 0.45 4.78 16 13 N -0.70 -24.13 5.34 -465.95 -2.49 -26.61 16 14 C 0.55 20.22 7.77 86.79 0.67 20.89 16 15 O -0.58 -24.80 16.34 -3.88 -0.06 -24.86 16 16 C -0.15 -4.74 5.87 -20.11 -0.12 -4.85 16 17 C -0.07 -1.74 9.54 22.56 0.22 -1.52 16 18 C -0.12 -2.58 10.02 22.20 0.22 -2.36 16 19 C -0.04 -0.99 9.68 22.53 0.22 -0.77 16 20 C -0.04 -1.11 5.87 -20.08 -0.12 -1.23 16 21 C 0.26 6.70 7.77 137.48 1.07 7.77 16 22 N -0.57 -11.68 10.81 -193.08 -2.09 -13.77 16 23 C 0.28 3.05 13.11 180.37 2.37 5.41 16 24 N -0.47 -6.32 7.44 -60.52 -0.45 -6.77 16 25 H 0.46 2.30 8.96 -213.11 -1.91 0.39 16 26 N -0.34 -8.67 12.42 -52.35 -0.65 -9.32 16 27 C -0.04 -1.19 9.22 22.75 0.21 -0.98 16 28 C -0.17 -5.79 5.36 -10.79 -0.06 -5.84 16 29 C -0.16 -4.43 10.18 30.61 0.31 -4.12 16 30 C -0.17 -5.85 9.78 30.61 0.30 -5.55 16 31 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.37 18.81 7.80 -92.71 -0.72 18.08 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.41 13.82 6.16 -92.71 -0.57 13.25 16 36 H 0.14 3.59 6.39 -2.91 -0.02 3.58 16 37 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.16 2.93 7.82 -2.91 -0.02 2.91 16 39 H 0.28 -0.74 8.06 -2.91 -0.02 -0.76 16 40 H 0.12 4.27 7.42 -2.91 -0.02 4.25 16 41 H 0.09 3.06 8.11 -2.39 -0.02 3.04 16 42 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 43 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.08 3.17 6.23 -2.38 -0.01 3.15 16 Total: -1.00 -75.11 385.73 0.03 -75.09 By element: Atomic # 1 Polarization: 46.46 SS G_CDS: -2.13 Total: 44.32 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 7.05 Total: 5.71 kcal Atomic # 7 Polarization: -139.25 SS G_CDS: -6.86 Total: -146.11 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.86 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -75.11 0.03 -75.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265366252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.013 kcal (2) G-P(sol) polarization free energy of solvation -75.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds