Wall clock time and date at job start Sat Apr 11 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00464 * 2 1 4 4 H 1.48501 * 109.46894 * 270.00320 * 3 2 1 5 5 H 1.48503 * 109.47027 * 30.00257 * 3 2 1 6 6 H 1.48497 * 109.47103 * 150.00338 * 3 2 1 7 7 C 1.38816 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99730 * 359.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21553 * 120.00289 * 359.72074 * 14 13 12 16 16 C 1.47869 * 119.99621 * 179.72373 * 14 13 12 17 17 C 1.39652 * 120.08529 * 359.97438 * 16 14 13 18 18 C 1.38023 * 120.09392 * 179.97438 * 17 16 14 19 19 C 1.38163 * 120.27363 * 0.02976 * 18 17 16 20 20 C 1.39414 * 120.16778 * 0.02562 * 19 18 17 21 21 C 1.48418 * 120.04344 * 179.97438 * 20 19 18 22 22 N 1.33972 * 125.65628 * 359.97438 * 21 20 19 23 23 C 1.30678 * 109.78636 * 180.02562 * 22 21 20 24 24 N 1.34523 * 108.29054 * 359.97438 * 23 22 21 25 25 H 0.97000 * 126.74276 * 180.02562 * 24 23 22 26 26 N 1.31501 * 125.65049 * 179.69387 * 21 20 19 27 27 C 1.39092 * 119.90259 * 359.68201 * 20 19 18 28 28 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 29 29 C 1.52999 * 117.50225 * 8.74581 * 28 10 9 30 30 C 1.52999 * 117.49761 * 300.08359 * 28 10 9 31 31 H 0.97002 * 120.00092 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 33 33 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 34 34 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 35 35 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 36 36 H 1.08004 * 119.95588 * 359.97438 * 17 16 14 37 37 H 1.07995 * 119.85901 * 180.02562 * 18 17 16 38 38 H 1.07999 * 119.91559 * 179.97438 * 19 18 17 39 39 H 1.08000 * 125.85730 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.13377 * 180.29637 * 27 20 19 41 41 H 1.09006 * 115.55266 * 154.41988 * 28 10 9 42 42 H 1.08993 * 117.49781 * 359.97438 * 29 28 10 43 43 H 1.09000 * 117.50138 * 145.02405 * 29 28 10 44 44 H 1.09009 * 117.50018 * 214.98040 * 30 28 10 45 45 H 1.08999 * 117.50301 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1119 -2.4711 -0.0022 11 1 3.5648 -3.2070 0.5870 12 6 5.4994 -2.2596 0.6071 13 7 5.3624 -1.6653 1.9391 14 6 6.4609 -1.3831 2.6672 15 8 7.5651 -1.6262 2.2208 16 6 6.3229 -0.7776 4.0092 17 6 5.0552 -0.4971 4.5236 18 6 4.9261 0.0675 5.7764 19 6 6.0482 0.3589 6.5280 20 6 7.3191 0.0846 6.0250 21 6 8.5226 0.3993 6.8345 22 7 8.5200 0.9462 8.0575 23 6 9.7480 1.0880 8.4813 24 7 10.5791 0.6290 7.5283 25 1 11.5482 0.6072 7.5649 26 7 9.7680 0.1826 6.4724 27 6 7.4573 -0.4900 4.7658 28 6 4.2575 -2.9747 -1.4396 29 6 3.8366 -2.0284 -2.5657 30 6 2.9737 -3.2463 -2.2263 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3623 -0.0014 33 1 6.0784 -1.5918 -0.0310 34 1 6.0108 -3.2188 0.6879 35 1 4.4813 -1.4710 2.2951 36 1 4.1746 -0.7223 3.9403 37 1 3.9439 0.2825 6.1707 38 1 5.9404 0.8011 7.5075 39 1 10.0447 1.5019 9.4337 40 1 8.4399 -0.7084 4.3744 41 1 5.1091 -3.6295 -1.6244 42 1 3.4556 -1.0472 -2.2826 43 1 4.4110 -2.0609 -3.4915 44 1 2.9808 -4.0797 -2.9290 45 1 2.0254 -3.0668 -1.7198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265366253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:01 Heat of formation + Delta-G solvation = 123.171362 kcal Electronic energy + Delta-G solvation = -28405.632319 eV Core-core repulsion = 24426.353837 eV Total energy + Delta-G solvation = -3979.278482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.39557 -40.07931 -38.45940 -37.60683 -34.65675 -33.58289 -33.25379 -32.18072 -31.54273 -30.92115 -30.13774 -28.49912 -24.59754 -24.16325 -23.29250 -22.71258 -22.00708 -21.49904 -21.18397 -19.97487 -19.24976 -18.79673 -17.94033 -17.27583 -16.21171 -15.92563 -15.81980 -15.50496 -15.38705 -14.97235 -14.86891 -14.51128 -14.24801 -13.97764 -13.72543 -13.50715 -13.07342 -12.88867 -12.76091 -12.51317 -12.43294 -11.87876 -11.57891 -11.40876 -11.20863 -10.98528 -10.81466 -10.80217 -10.58908 -10.45025 -10.32640 -10.24587 -9.84458 -9.59167 -9.53211 -9.22646 -9.11790 -9.04082 -8.82156 -8.68640 -7.40181 -5.85660 -3.22784 0.56096 0.96270 1.46242 2.25869 2.54025 3.12072 3.31129 3.32614 3.36020 3.42149 3.66859 3.89254 4.23474 4.50474 4.52579 4.53582 4.74962 4.85734 5.00317 5.12820 5.20828 5.30465 5.36253 5.41526 5.51249 5.67057 5.74823 5.77098 5.82205 5.85458 5.91693 5.94855 5.97895 6.21560 6.23999 6.28523 6.31946 6.36987 6.55300 6.61422 6.62666 6.68015 6.78924 7.00259 7.12946 7.65594 7.78507 7.90307 8.32567 8.41822 9.10170 9.82366 10.01637 11.31861 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.002634 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.762131 B =10625.801463 C =11828.327959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.011 3.989 3 Si 0.876 3.124 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.093 0.907 9 N -0.744 5.744 10 C 0.197 3.803 11 H 0.067 0.933 12 C 0.116 3.884 13 N -0.710 5.710 14 C 0.555 3.445 15 O -0.546 6.546 16 C -0.135 4.135 17 C -0.065 4.065 18 C -0.129 4.129 19 C -0.052 4.052 20 C -0.034 4.034 21 C 0.275 3.725 22 N -0.535 5.535 23 C 0.264 3.736 24 N -0.485 5.485 25 H 0.443 0.557 26 N -0.301 5.301 27 C -0.026 4.026 28 C -0.178 4.178 29 C -0.166 4.166 30 C -0.170 4.170 31 H 0.260 0.740 32 H 0.363 0.637 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.225 0.775 40 H 0.143 0.857 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.235 -0.113 15.508 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.185 4.185 3 Si 0.706 3.294 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.111 0.889 9 N -0.387 5.387 10 C 0.087 3.913 11 H 0.085 0.915 12 C -0.008 4.008 13 N -0.362 5.362 14 C 0.342 3.658 15 O -0.426 6.426 16 C -0.138 4.138 17 C -0.084 4.084 18 C -0.147 4.147 19 C -0.073 4.073 20 C -0.036 4.036 21 C -0.005 4.005 22 N -0.263 5.263 23 C -0.035 4.035 24 N -0.203 5.203 25 H 0.289 0.711 26 N -0.130 5.130 27 C -0.047 4.047 28 C -0.199 4.199 29 C -0.203 4.203 30 C -0.207 4.207 31 H 0.070 0.930 32 H 0.197 0.803 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.247 0.753 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.241 0.759 40 H 0.161 0.839 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.640 -0.572 14.702 22.971 hybrid contribution 0.937 1.515 0.313 1.809 sum 18.577 0.943 15.015 23.905 Atomic orbital electron populations 1.69684 1.05077 1.25885 1.56929 1.24632 0.95096 0.96945 1.01842 0.86701 0.79287 0.85404 0.78006 1.21108 1.21783 1.20199 1.19003 0.80250 0.94577 1.43577 0.88882 1.42866 1.04163 1.01805 1.89850 1.19974 0.89624 0.89521 0.92167 0.91525 1.21671 0.98523 0.98208 0.82425 1.45932 1.09359 1.62845 1.18101 1.18168 0.84593 0.78393 0.84642 1.90748 1.25727 1.54007 1.72071 1.19890 0.93861 1.04503 0.95567 1.21658 0.96753 0.94459 0.95538 1.21109 0.99083 1.00071 0.94428 1.21385 0.90612 0.95422 0.99861 1.17303 0.89023 1.03980 0.93343 1.22271 0.91351 0.96257 0.90600 1.70503 1.21701 1.22527 1.11577 1.26108 0.85484 0.95701 0.96251 1.48141 1.10851 1.48150 1.13148 0.71097 1.78327 1.02274 1.23187 1.09211 1.21242 0.99329 0.92689 0.91413 1.22996 0.98338 1.03630 0.94975 1.22846 1.03221 0.97163 0.97038 1.22904 0.96429 0.98667 1.02696 0.92978 0.80339 0.91540 0.91196 0.75320 0.84502 0.84415 0.84300 0.75861 0.83913 0.89300 0.87224 0.91071 0.90855 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.28 13.97 55.49 0.78 -26.51 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 20.84 27.73 -169.99 -4.71 16.13 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 7 C -0.24 -6.05 8.64 -15.06 -0.13 -6.18 16 8 H 0.09 2.51 7.14 -52.48 -0.37 2.13 16 9 N -0.74 -15.33 2.88 -53.42 -0.15 -15.48 16 10 C 0.20 3.41 2.86 -67.93 -0.19 3.22 16 11 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 12 C 0.12 1.85 5.22 -4.04 -0.02 1.83 16 13 N -0.71 -11.27 5.34 -61.24 -0.33 -11.59 16 14 C 0.56 9.26 7.77 -12.32 -0.10 9.16 16 15 O -0.55 -10.60 16.34 5.32 0.09 -10.51 16 16 C -0.14 -1.97 5.87 -105.01 -0.62 -2.59 16 17 C -0.06 -0.82 9.54 -39.13 -0.37 -1.19 16 18 C -0.13 -1.42 10.02 -39.69 -0.40 -1.82 16 19 C -0.05 -0.60 9.68 -39.17 -0.38 -0.97 16 20 C -0.03 -0.44 5.87 -104.95 -0.62 -1.06 16 21 C 0.27 3.48 7.77 -156.62 -1.22 2.27 16 22 N -0.54 -5.77 10.81 -12.38 -0.13 -5.90 16 23 C 0.26 1.70 13.11 -90.70 -1.19 0.51 16 24 N -0.48 -3.45 7.44 29.52 0.22 -3.23 16 25 H 0.44 1.37 8.96 -182.35 -1.63 -0.27 16 26 N -0.30 -3.66 12.42 32.10 0.40 -3.26 16 27 C -0.03 -0.37 9.22 -38.85 -0.36 -0.73 16 28 C -0.18 -2.95 5.70 -90.62 -0.52 -3.47 16 29 C -0.17 -2.96 9.74 -26.69 -0.26 -3.22 16 30 C -0.17 -2.99 9.87 -26.69 -0.26 -3.26 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.36 7.72 5.66 -40.82 -0.23 7.49 16 33 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.41 6.31 6.16 -40.82 -0.25 6.06 16 36 H 0.14 1.65 6.39 -52.48 -0.34 1.31 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.14 1.37 7.82 -52.49 -0.41 0.96 16 39 H 0.23 0.18 8.06 -52.49 -0.42 -0.24 16 40 H 0.14 2.17 7.42 -52.49 -0.39 1.78 16 41 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 42 H 0.11 2.28 6.68 -51.93 -0.35 1.94 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 45 H 0.11 2.24 6.22 -51.93 -0.32 1.91 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -34.04 379.71 -11.69 -45.74 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -6.84 Total: 16.19 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -6.72 Total: -7.29 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: 0.78 Total: -65.98 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.04 -11.69 -45.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265366253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.909 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds