Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00007 * 2 1 4 4 H 1.48490 * 109.47365 * 269.99997 * 3 2 1 5 5 H 1.48506 * 109.47249 * 30.00113 * 3 2 1 6 6 H 1.48498 * 109.47306 * 149.99622 * 3 2 1 7 7 C 1.38805 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99947 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00397 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00117 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47349 * 34.99689 * 10 9 7 12 12 C 1.53000 * 109.47462 * 154.99890 * 10 9 7 13 13 N 1.46500 * 109.47041 * 305.00273 * 12 10 9 14 14 C 1.34779 * 120.00310 * 179.97438 * 13 12 10 15 15 O 1.21565 * 119.99507 * 359.97438 * 14 13 12 16 16 C 1.47758 * 119.99822 * 179.97438 * 14 13 12 17 17 C 1.40604 * 126.03824 * 179.97438 * 16 14 13 18 18 N 1.31247 * 106.62189 * 179.97438 * 17 16 14 19 19 N 1.40103 * 107.17921 * 0.02562 * 18 17 16 20 20 C 1.40141 * 125.57057 * 179.97438 * 19 18 17 21 21 C 1.38868 * 120.06644 * 0.02599 * 20 19 18 22 22 C 1.38115 * 119.92822 * 179.97438 * 21 20 19 23 23 C 1.38278 * 120.07350 * 0.02562 * 22 21 20 24 24 C 1.38288 * 120.13525 * 359.97313 * 23 22 21 25 25 C 1.38117 * 120.06919 * 0.02997 * 24 23 22 26 26 N 1.28707 * 108.86313 * 0.24179 * 19 18 17 27 27 C 1.53004 * 109.47247 * 274.99923 * 10 9 7 28 28 C 1.52995 * 117.49879 * 128.74827 * 27 10 9 29 29 C 1.52994 * 117.49896 * 60.08819 * 27 10 9 30 30 H 0.97006 * 120.00516 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00154 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47786 * 184.99967 * 12 10 9 33 33 H 1.09004 * 109.46878 * 64.99647 * 12 10 9 34 34 H 0.97004 * 119.99657 * 359.97438 * 13 12 10 35 35 H 1.08000 * 126.69123 * 359.95893 * 17 16 14 36 36 H 1.07998 * 120.03346 * 0.24948 * 21 20 19 37 37 H 1.08000 * 119.96136 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.93551 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.96871 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.02985 * 180.02562 * 25 24 23 41 41 H 1.08996 * 115.54792 * 274.41375 * 27 10 9 42 42 H 1.09003 * 117.50145 * 359.97438 * 28 27 10 43 43 H 1.09000 * 117.50089 * 145.02436 * 28 27 10 44 44 H 1.09007 * 117.49722 * 214.98337 * 29 27 10 45 45 H 1.08999 * 117.49797 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3795 -1.2020 0.0011 10 6 4.1121 -2.4708 0.0022 11 1 3.5649 -3.2068 -0.5869 12 6 5.4995 -2.2592 -0.6070 13 7 5.3625 -1.6650 -1.9391 14 6 6.4607 -1.3874 -2.6694 15 8 7.5649 -1.6297 -2.2226 16 6 6.3223 -0.7886 -4.0131 17 6 7.3761 -0.4484 -4.8797 18 7 6.8261 0.0508 -5.9617 19 7 5.4383 0.0229 -5.7711 20 6 4.4799 0.4680 -6.6916 21 6 4.8799 0.9909 -7.9144 22 6 3.9329 1.4283 -8.8196 23 6 2.5878 1.3464 -8.5094 24 6 2.1864 0.8261 -7.2926 25 6 3.1286 0.3871 -6.3830 26 7 5.1876 -0.4732 -4.6103 27 6 4.2577 -2.9744 1.4396 28 6 3.8337 -4.4155 1.7296 29 6 2.9740 -3.2500 2.2250 30 1 -0.4851 0.8401 -0.0004 31 1 3.8645 -0.3621 0.0014 32 1 6.0110 -3.2184 -0.6879 33 1 6.0784 -1.5914 0.0309 34 1 4.4813 -1.4713 -2.2954 35 1 8.4322 -0.5734 -4.6915 36 1 5.9300 1.0514 -8.1589 37 1 4.2433 1.8354 -9.7706 38 1 1.8493 1.6894 -9.2188 39 1 1.1352 0.7630 -7.0533 40 1 2.8143 -0.0195 -5.4331 41 1 5.1107 -2.5799 1.9918 42 1 3.4506 -5.0048 0.8965 43 1 4.4075 -4.9691 2.4729 44 1 2.9825 -3.0372 3.2941 45 1 2.0257 -3.0722 1.7179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265380330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 147.768816 kcal Electronic energy + Delta-G solvation = -28729.521614 eV Core-core repulsion = 24751.309758 eV Total energy + Delta-G solvation = -3978.211857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.83894 -39.60603 -39.16828 -37.63509 -34.84598 -34.05838 -33.54649 -32.61271 -31.32672 -31.13973 -29.87464 -28.41556 -25.25910 -24.00666 -23.39538 -22.51416 -21.80662 -21.65593 -21.57171 -20.33432 -19.70025 -18.67159 -17.91059 -17.07332 -16.57445 -16.53027 -15.70705 -15.50579 -15.39215 -14.91593 -14.80651 -14.33929 -14.31220 -14.15112 -13.81648 -13.77369 -13.24323 -13.15724 -12.82584 -12.47423 -12.34932 -11.87890 -11.64994 -11.53590 -11.43102 -11.09752 -10.97455 -10.95740 -10.89923 -10.75894 -10.39486 -10.28783 -10.17322 -9.73990 -9.55163 -9.40685 -9.34975 -9.03376 -8.89620 -8.52407 -7.37710 -5.83837 -3.19908 0.31006 1.00152 1.54044 1.70181 1.74479 3.20426 3.27976 3.33285 3.37453 3.42111 3.45075 3.57408 4.38794 4.53214 4.54036 4.55436 4.65928 4.75489 4.91584 5.01236 5.07696 5.12547 5.31021 5.31352 5.40198 5.42457 5.55274 5.64386 5.65236 5.71769 5.73585 5.88213 5.95390 5.97633 6.04033 6.12165 6.15914 6.16099 6.28725 6.42526 6.55092 6.67333 6.68883 6.72271 6.98280 7.49722 7.76380 7.90182 8.25859 8.34003 9.11587 9.84496 10.03403 11.33801 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009658 B = 0.003543 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.534269 B = 7901.293197 C = 9845.536369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.011 3.989 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.093 0.907 9 N -0.742 5.742 10 C 0.198 3.802 11 H 0.065 0.935 12 C 0.115 3.885 13 N -0.699 5.699 14 C 0.603 3.397 15 O -0.538 6.538 16 C -0.052 4.052 17 C 0.079 3.921 18 N -0.282 5.282 19 N -0.160 5.160 20 C 0.152 3.848 21 C -0.109 4.109 22 C -0.104 4.104 23 C -0.117 4.117 24 C -0.097 4.097 25 C -0.106 4.106 26 N -0.192 5.192 27 C -0.164 4.164 28 C -0.193 4.193 29 C -0.154 4.154 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.417 0.583 35 H 0.219 0.781 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.660 -1.012 -14.380 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.185 4.185 3 Si 0.707 3.293 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.111 0.889 9 N -0.385 5.385 10 C 0.088 3.912 11 H 0.083 0.917 12 C -0.009 4.009 13 N -0.350 5.350 14 C 0.385 3.615 15 O -0.414 6.414 16 C -0.219 4.219 17 C -0.112 4.112 18 N -0.109 5.109 19 N -0.052 5.052 20 C 0.062 3.938 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.135 4.135 24 C -0.116 4.116 25 C -0.127 4.127 26 N -0.036 5.036 27 C -0.185 4.185 28 C -0.231 4.231 29 C -0.191 4.191 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.254 0.746 35 H 0.235 0.765 36 H 0.158 0.842 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.342 -0.813 -14.943 17.641 hybrid contribution 0.798 1.156 0.712 1.575 sum 10.140 0.343 -14.231 17.478 Atomic orbital electron populations 1.69683 1.05034 1.25812 1.57236 1.24599 0.95085 0.96917 1.01870 0.86678 0.79362 0.85426 0.77810 1.21147 1.21827 1.20345 1.18997 0.80277 0.94546 1.43209 0.88945 1.42840 1.04155 1.01679 1.89784 1.20028 0.89646 0.89770 0.91733 0.91695 1.21763 0.98717 0.98366 0.82093 1.45891 1.09497 1.61839 1.17822 1.16655 0.84914 0.78109 0.81792 1.90793 1.25530 1.54277 1.70806 1.23090 0.88715 1.10540 0.99604 1.25131 1.01834 0.95088 0.89192 1.77990 0.88151 1.21837 1.22943 1.48286 1.03806 1.43429 1.09686 1.17420 0.86121 1.01686 0.88605 1.20904 1.01398 0.99130 0.91547 1.21037 0.92563 0.99397 0.99252 1.21360 0.96167 0.98948 0.97063 1.21148 0.99962 0.97327 0.93117 1.21142 0.89837 1.00132 1.01634 1.73851 1.26403 1.08200 0.95184 1.22936 0.99152 0.97110 0.99328 1.22956 1.05422 0.91290 1.03420 1.22850 0.96785 1.00390 0.99116 0.93049 0.80483 0.90693 0.91350 0.74592 0.76494 0.84236 0.84752 0.85089 0.84309 0.83583 0.89070 0.89387 0.90011 0.90190 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.97 55.49 0.78 -26.97 16 2 C 0.01 0.32 5.50 -17.44 -0.10 0.22 16 3 Si 0.88 21.53 27.74 -169.99 -4.71 16.81 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 7 C -0.24 -6.16 9.11 -15.06 -0.14 -6.30 16 8 H 0.09 2.54 7.14 -52.48 -0.37 2.16 16 9 N -0.74 -15.91 4.34 -53.43 -0.23 -16.14 16 10 C 0.20 3.46 2.70 -67.93 -0.18 3.28 16 11 H 0.07 1.17 7.84 -51.93 -0.41 0.76 16 12 C 0.11 1.79 5.22 -4.04 -0.02 1.77 16 13 N -0.70 -11.31 5.38 -61.28 -0.33 -11.64 16 14 C 0.60 9.75 7.83 -12.37 -0.10 9.65 16 15 O -0.54 -9.48 16.90 5.31 0.09 -9.39 16 16 C -0.05 -0.79 7.09 -82.99 -0.59 -1.38 16 17 C 0.08 1.01 11.91 -16.91 -0.20 0.81 16 18 N -0.28 -3.85 11.90 30.85 0.37 -3.48 16 19 N -0.16 -2.34 4.44 32.48 0.14 -2.20 16 20 C 0.15 1.97 6.74 -83.60 -0.56 1.41 16 21 C -0.11 -1.13 9.65 -39.39 -0.38 -1.51 16 22 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 23 C -0.12 -0.94 10.04 -39.55 -0.40 -1.34 16 24 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 25 C -0.11 -1.31 9.61 -39.40 -0.38 -1.69 16 26 N -0.19 -3.03 10.95 33.29 0.36 -2.67 16 27 C -0.16 -2.69 5.36 -90.62 -0.49 -3.17 16 28 C -0.19 -2.83 10.18 -26.70 -0.27 -3.10 16 29 C -0.15 -2.69 9.78 -26.70 -0.26 -2.95 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.36 7.98 5.66 -40.82 -0.23 7.75 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.42 7.08 7.84 -40.82 -0.32 6.76 16 35 H 0.22 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.14 1.35 7.67 -52.49 -0.40 0.95 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.15 1.96 7.67 -52.49 -0.40 1.56 16 41 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 42 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.11 2.26 6.23 -51.93 -0.32 1.94 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -31.50 386.48 -8.42 -39.92 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -5.85 Total: 16.79 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -4.86 Total: -6.87 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: 1.09 Total: -63.10 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.50 -8.42 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265380330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.690 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds