Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 120.00329 * 2 1 4 4 H 1.48498 * 109.47058 * 239.99455 * 3 2 1 5 5 H 1.48499 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47178 * 119.99707 * 3 2 1 7 7 C 1.38815 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00206 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99962 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47002 * 325.00427 * 10 9 7 12 12 C 1.53007 * 109.46975 * 205.00768 * 10 9 7 13 13 N 1.46494 * 109.47202 * 54.99921 * 12 10 9 14 14 C 1.34780 * 119.99997 * 180.02562 * 13 12 10 15 15 O 1.21565 * 119.99518 * 359.97438 * 14 13 12 16 16 C 1.47756 * 120.00368 * 180.02562 * 14 13 12 17 17 C 1.40594 * 126.04769 * 179.97438 * 16 14 13 18 18 N 1.31247 * 106.62606 * 179.97438 * 17 16 14 19 19 N 1.40103 * 107.17897 * 359.97438 * 18 17 16 20 20 C 1.40141 * 125.57057 * 179.97438 * 19 18 17 21 21 C 1.38868 * 120.06644 * 0.02599 * 20 19 18 22 22 C 1.38115 * 119.92822 * 179.97438 * 21 20 19 23 23 C 1.38278 * 120.07350 * 0.02562 * 22 21 20 24 24 C 1.38288 * 120.13525 * 359.97313 * 23 22 21 25 25 C 1.38117 * 120.06919 * 0.02997 * 24 23 22 26 26 N 1.28707 * 108.86313 * 0.26463 * 19 18 17 27 27 C 1.52997 * 109.46996 * 85.00731 * 10 9 7 28 28 C 1.52999 * 117.49791 * 8.74564 * 27 10 9 29 29 C 1.53002 * 117.49712 * 300.08431 * 27 10 9 30 30 H 0.97007 * 119.99991 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99786 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46754 * 294.99996 * 12 10 9 33 33 H 1.09001 * 109.46939 * 175.00102 * 12 10 9 34 34 H 0.97000 * 120.00504 * 359.97438 * 13 12 10 35 35 H 1.08000 * 126.68728 * 359.97411 * 17 16 14 36 36 H 1.07998 * 120.03346 * 0.24948 * 21 20 19 37 37 H 1.08000 * 119.96136 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.93551 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.96871 * 180.02562 * 24 23 22 40 40 H 1.08005 * 120.03442 * 180.02562 * 25 24 23 41 41 H 1.09000 * 115.54818 * 154.41948 * 27 10 9 42 42 H 1.08997 * 117.49823 * 359.97438 * 28 27 10 43 43 H 1.08999 * 117.49441 * 145.02538 * 28 27 10 44 44 H 1.08999 * 117.49823 * 214.98445 * 29 27 10 45 45 H 1.09001 * 117.49658 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 1 2.9687 -3.5511 -0.5868 12 6 1.1807 -4.7527 -0.6061 13 7 0.7342 -4.3371 -1.9381 14 6 -0.0556 -5.1495 -2.6680 15 8 -0.3970 -6.2273 -2.2212 16 6 -0.5055 -4.7307 -4.0116 17 6 -1.3263 -5.4736 -4.8782 18 7 -1.4852 -4.7472 -5.9597 19 7 -0.7686 -3.5586 -5.7688 20 6 -0.6759 -2.5058 -6.6892 21 6 -1.3292 -2.5909 -7.9116 22 6 -1.2364 -1.5514 -8.8163 23 6 -0.4935 -0.4272 -8.5062 24 6 0.1583 -0.3395 -7.2897 25 6 0.0694 -1.3756 -6.3807 26 7 -0.2043 -3.5940 -4.6126 27 6 2.4216 -4.0344 1.4401 28 6 1.8129 -3.1964 2.5662 29 6 3.2991 -3.0584 2.2264 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 0.0016 32 1 0.3131 -4.9200 0.0321 33 1 1.7556 -5.6752 -0.6870 34 1 1.0064 -3.4770 -2.2944 35 1 -1.7446 -6.4515 -4.6904 36 1 -1.9129 -3.4669 -8.1528 37 1 -1.7439 -1.6172 -9.7674 38 1 -0.4220 0.3841 -9.2155 39 1 0.7375 0.5400 -7.0501 40 1 0.5783 -1.3063 -5.4306 41 1 2.5628 -5.0993 1.6250 42 1 1.1537 -2.3759 2.2830 43 1 1.5541 -3.7100 3.4921 44 1 4.0173 -3.4811 2.9289 45 1 3.6176 -2.1475 1.7195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265380334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 147.334334 kcal Electronic energy + Delta-G solvation = -28751.863454 eV Core-core repulsion = 24773.632757 eV Total energy + Delta-G solvation = -3978.230697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.73957 -39.51631 -39.06383 -37.58257 -34.56505 -33.97866 -33.29246 -32.53373 -31.22355 -30.83653 -29.71888 -28.10350 -25.15617 -23.94695 -23.51856 -22.78981 -21.83086 -21.50307 -21.42570 -20.12624 -19.12992 -18.53589 -17.55729 -16.95453 -16.47589 -16.46959 -15.59318 -15.44056 -15.25767 -14.78662 -14.70991 -14.47052 -14.24966 -13.94229 -13.72873 -13.58763 -13.16386 -13.08943 -12.86903 -12.27035 -12.08091 -11.81563 -11.58658 -11.31482 -11.18191 -11.01433 -10.89025 -10.88451 -10.85648 -10.53797 -10.30171 -10.16181 -10.03815 -9.67605 -9.47115 -9.30450 -9.17741 -8.98475 -8.74221 -8.44093 -7.07535 -5.83577 -3.13857 0.38390 1.04649 1.63791 1.79091 1.83125 3.32962 3.38157 3.41223 3.43697 3.44484 3.51559 3.67860 4.49031 4.59541 4.60309 4.63661 4.75244 4.80367 5.00958 5.06420 5.17757 5.35101 5.38575 5.46970 5.50860 5.56537 5.69833 5.73593 5.79804 5.84466 5.96351 6.02484 6.03881 6.05010 6.10831 6.20269 6.34531 6.38714 6.43445 6.63919 6.71732 6.74940 6.84584 6.99896 7.28137 7.61315 7.64682 7.90713 8.32929 8.41158 9.45476 9.99067 10.35205 11.37693 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009226 B = 0.003554 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.241120 B = 7876.408601 C =10477.272763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.191 3.809 11 H 0.058 0.942 12 C 0.118 3.882 13 N -0.693 5.693 14 C 0.602 3.398 15 O -0.542 6.542 16 C -0.049 4.049 17 C 0.078 3.922 18 N -0.284 5.284 19 N -0.162 5.162 20 C 0.155 3.845 21 C -0.110 4.110 22 C -0.104 4.104 23 C -0.118 4.118 24 C -0.098 4.098 25 C -0.106 4.106 26 N -0.190 5.190 27 C -0.177 4.177 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.417 0.583 35 H 0.218 0.782 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 -5.889 -14.173 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.081 3.919 11 H 0.076 0.924 12 C -0.006 4.006 13 N -0.344 5.344 14 C 0.385 3.615 15 O -0.418 6.418 16 C -0.216 4.216 17 C -0.113 4.113 18 N -0.111 5.111 19 N -0.054 5.054 20 C 0.065 3.935 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.137 4.137 24 C -0.116 4.116 25 C -0.127 4.127 26 N -0.034 5.034 27 C -0.199 4.199 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.255 0.745 35 H 0.235 0.765 36 H 0.158 0.842 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.164 0.836 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.502 -5.555 -14.736 15.756 hybrid contribution 0.198 0.662 0.674 0.965 sum -0.303 -4.893 -14.062 14.892 Atomic orbital electron populations 1.69646 1.05017 1.25805 1.56984 1.24691 0.95365 0.97470 1.02716 0.86368 0.78609 0.83924 0.77864 1.21335 1.21823 1.21249 1.19107 0.90848 0.83797 1.43409 0.91122 1.42463 1.05844 0.99466 1.88093 1.19996 0.94100 0.86029 0.91807 0.92434 1.21688 0.99071 0.97696 0.82172 1.45851 1.49140 1.21760 1.17690 1.16645 0.78870 0.84204 0.81804 1.90784 1.57880 1.22249 1.70891 1.23107 1.06346 0.92659 0.99520 1.25122 0.96135 1.00874 0.89172 1.77974 1.16419 0.93741 1.22957 1.48274 1.33823 1.13261 1.10037 1.17408 1.01773 0.85846 0.88519 1.20905 0.99917 1.00646 0.91588 1.21026 0.99024 0.92943 0.99264 1.21340 0.97066 0.98208 0.97078 1.21122 0.99088 0.98246 0.93172 1.21133 0.98460 0.91536 1.01568 1.73871 1.14287 1.20080 0.95144 1.23059 1.06018 0.95366 0.95460 1.22914 0.96698 1.03507 0.96845 1.22850 0.93501 1.01874 1.03014 0.93434 0.77901 0.91215 0.91378 0.74542 0.76548 0.84247 0.84806 0.85183 0.84465 0.83577 0.89551 0.86335 0.91283 0.91030 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.20 13.06 55.49 0.72 -25.47 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.90 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -5.96 8.16 -15.06 -0.12 -6.08 16 8 H 0.07 1.73 6.91 -52.48 -0.36 1.36 16 9 N -0.72 -15.85 3.08 -53.42 -0.16 -16.02 16 10 C 0.19 3.47 2.86 -67.93 -0.19 3.28 16 11 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 12 C 0.12 1.96 5.22 -4.04 -0.02 1.94 16 13 N -0.69 -11.87 5.39 -61.28 -0.33 -12.20 16 14 C 0.60 10.31 7.83 -12.37 -0.10 10.21 16 15 O -0.54 -10.07 16.90 5.31 0.09 -9.98 16 16 C -0.05 -0.78 7.09 -82.99 -0.59 -1.37 16 17 C 0.08 1.06 11.91 -16.91 -0.20 0.86 16 18 N -0.28 -4.04 11.90 30.85 0.37 -3.67 16 19 N -0.16 -2.46 4.44 32.48 0.14 -2.31 16 20 C 0.16 2.07 6.74 -83.60 -0.56 1.51 16 21 C -0.11 -1.18 9.65 -39.39 -0.38 -1.56 16 22 C -0.10 -0.87 10.04 -39.61 -0.40 -1.27 16 23 C -0.12 -0.98 10.04 -39.55 -0.40 -1.37 16 24 C -0.10 -0.97 10.04 -39.61 -0.40 -1.36 16 25 C -0.11 -1.34 9.61 -39.40 -0.38 -1.71 16 26 N -0.19 -3.11 10.95 33.29 0.36 -2.75 16 27 C -0.18 -3.03 5.71 -90.62 -0.52 -3.55 16 28 C -0.16 -3.00 9.74 -26.69 -0.26 -3.26 16 29 C -0.18 -3.09 9.87 -26.69 -0.26 -3.35 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.39 9.46 7.80 -40.82 -0.32 9.14 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.42 7.54 7.84 -40.82 -0.32 7.22 16 35 H 0.22 2.18 8.06 -52.49 -0.42 1.75 16 36 H 0.14 1.40 7.67 -52.49 -0.40 1.00 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.15 2.01 7.67 -52.48 -0.40 1.60 16 41 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 42 H 0.12 2.63 6.68 -51.93 -0.35 2.29 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.10 2.02 6.22 -51.93 -0.32 1.70 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -29.68 386.68 -8.71 -38.39 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -5.83 Total: 19.34 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -4.88 Total: -7.35 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 1.11 Total: -62.42 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.68 -8.71 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265380334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.725 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds