Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00085 * 2 1 4 4 H 1.48495 * 109.46867 * 239.99580 * 3 2 1 5 5 H 1.48499 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47189 * 119.99176 * 3 2 1 7 7 C 1.38812 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99831 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99865 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46915 * 35.00266 * 10 9 7 12 12 C 1.52998 * 109.46768 * 154.99935 * 10 9 7 13 13 N 1.46504 * 109.47258 * 305.00149 * 12 10 9 14 14 C 1.34777 * 119.99681 * 179.97438 * 13 12 10 15 15 O 1.21576 * 120.00387 * 0.02562 * 14 13 12 16 16 C 1.47625 * 119.99846 * 180.02562 * 14 13 12 17 17 C 1.39627 * 120.18722 * 306.39284 * 16 14 13 18 18 C 1.37860 * 119.91433 * 180.02562 * 17 16 14 19 19 C 1.38505 * 120.30471 * 359.97438 * 18 17 16 20 20 C 1.38104 * 120.38058 * 359.97438 * 19 18 17 21 21 C 1.38712 * 120.07807 * 0.02562 * 20 19 18 22 22 N 1.39810 * 120.15141 * 179.97438 * 21 20 19 23 23 C 1.36325 * 126.87033 * 353.36861 * 22 21 20 24 24 C 1.34962 * 106.78090 * 179.88135 * 23 22 21 25 25 N 1.33375 * 109.01553 * 0.39072 * 24 23 22 26 26 N 1.28765 * 109.92748 * 359.75391 * 25 24 23 27 27 C 1.53000 * 109.47472 * 275.00209 * 10 9 7 28 28 C 1.52999 * 117.49818 * 128.74593 * 27 10 9 29 29 C 1.52998 * 117.49795 * 60.08490 * 27 10 9 30 30 H 0.97004 * 119.99993 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47175 * 184.99929 * 12 10 9 33 33 H 1.09003 * 109.46949 * 65.00210 * 12 10 9 34 34 H 0.96998 * 120.00072 * 0.02562 * 13 12 10 35 35 H 1.07997 * 120.04456 * 0.03494 * 17 16 14 36 36 H 1.08006 * 119.84383 * 179.72251 * 18 17 16 37 37 H 1.08003 * 119.80782 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.95926 * 180.02562 * 20 19 18 39 39 H 1.08005 * 126.60783 * 359.97438 * 23 22 21 40 40 H 1.07995 * 125.48811 * 180.14760 * 24 23 22 41 41 H 1.08998 * 115.54649 * 274.41768 * 27 10 9 42 42 H 1.09003 * 117.49837 * 0.02562 * 28 27 10 43 43 H 1.09004 * 117.49441 * 145.02015 * 28 27 10 44 44 H 1.08992 * 117.50193 * 214.98117 * 29 27 10 45 45 H 1.09008 * 117.49997 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5505 0.5900 12 6 1.1809 -4.7521 0.6102 13 7 0.7343 -4.3354 1.9418 14 6 -0.0556 -5.1472 2.6722 15 8 -0.3970 -6.2255 2.2264 16 6 -0.5062 -4.7271 4.0138 17 6 0.4250 -4.3235 4.9727 18 6 -0.0019 -3.9328 6.2240 19 6 -1.3515 -3.9381 6.5351 20 6 -2.2833 -4.3339 5.5958 21 6 -1.8713 -4.7301 4.3319 22 7 -2.8132 -5.1317 3.3800 23 6 -4.1506 -5.3083 3.5765 24 6 -4.6708 -5.6945 2.3926 25 7 -3.6914 -5.7653 1.4900 26 7 -2.5701 -5.4393 2.0326 27 6 2.4221 -4.0356 -1.4364 28 6 3.8824 -4.3891 -1.7255 29 6 3.3030 -3.0622 -2.2221 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 1.7558 -5.6745 0.6919 33 1 0.3134 -4.9200 -0.0280 34 1 1.0064 -3.4750 2.2974 35 1 1.4784 -4.3173 4.7345 36 1 0.7197 -3.6252 6.9663 37 1 -1.6771 -3.6308 7.5180 38 1 -3.3341 -4.3350 5.8456 39 1 -4.6902 -5.1652 4.5011 40 1 -5.7116 -5.9149 2.2070 41 1 1.6543 -4.5775 -1.9885 42 1 4.5837 -4.3522 -0.8919 43 1 4.0752 -5.1634 -2.4682 44 1 3.1149 -2.9639 -3.2912 45 1 3.6228 -2.1515 -1.7154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265382367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = 150.184849 kcal Electronic energy + Delta-G solvation = -29572.710245 eV Core-core repulsion = 25594.603155 eV Total energy + Delta-G solvation = -3978.107090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.14079 -40.00777 -38.46392 -37.37727 -34.71938 -34.38705 -33.31901 -31.88054 -30.82298 -30.55880 -29.71959 -27.92851 -24.83520 -24.08498 -23.51770 -22.47632 -21.68202 -21.44199 -21.36321 -20.16450 -19.55293 -18.61205 -17.61731 -16.96734 -15.97473 -15.71189 -15.53024 -15.41796 -15.12076 -15.05135 -14.60114 -14.33518 -14.26726 -13.94323 -13.83989 -13.51279 -13.10814 -13.07415 -12.82379 -12.36407 -12.01961 -11.79373 -11.35420 -11.29193 -11.16113 -11.08271 -11.02889 -10.84934 -10.83472 -10.66726 -10.14324 -9.90688 -9.74542 -9.46727 -9.35366 -9.28525 -9.25439 -8.95567 -8.55899 -8.48689 -7.01991 -5.78823 -3.08545 0.35872 0.83222 1.82746 2.13226 2.64122 2.99136 3.35952 3.39809 3.45194 3.46261 3.68506 4.21398 4.37913 4.44309 4.60716 4.61388 4.73988 4.82685 4.96997 5.01530 5.13644 5.22010 5.28700 5.38106 5.48977 5.55018 5.56672 5.64280 5.81390 5.88088 5.95930 5.96585 6.05761 6.09217 6.13328 6.19015 6.24633 6.32375 6.46776 6.58428 6.65829 6.76417 6.81696 6.97819 7.02484 7.65690 7.97948 8.24484 8.37517 8.64262 9.49546 10.05141 10.41271 11.42664 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009645 B = 0.003691 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.397305 B = 7584.460426 C = 8326.580956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.716 5.716 10 C 0.194 3.806 11 H 0.054 0.946 12 C 0.122 3.878 13 N -0.702 5.702 14 C 0.556 3.444 15 O -0.517 6.517 16 C -0.113 4.113 17 C -0.066 4.066 18 C -0.122 4.122 19 C -0.082 4.082 20 C -0.135 4.135 21 C 0.183 3.817 22 N -0.326 5.326 23 C 0.008 3.992 24 C -0.074 4.074 25 N -0.240 5.240 26 N -0.001 5.001 27 C -0.158 4.158 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.192 0.808 40 H 0.187 0.813 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 -9.728 14.210 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.083 3.917 11 H 0.072 0.928 12 C -0.002 4.002 13 N -0.354 5.354 14 C 0.340 3.660 15 O -0.392 6.392 16 C -0.118 4.118 17 C -0.085 4.085 18 C -0.140 4.140 19 C -0.100 4.100 20 C -0.156 4.156 21 C 0.089 3.911 22 N -0.108 5.108 23 C -0.140 4.140 24 C -0.227 4.227 25 N -0.111 5.111 26 N 0.021 4.979 27 C -0.180 4.180 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.245 0.755 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.209 0.791 40 H 0.204 0.796 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.602 -10.475 12.719 16.682 hybrid contribution -0.618 1.586 0.881 1.917 sum -3.220 -8.889 13.600 16.564 Atomic orbital electron populations 1.69665 1.05044 1.25692 1.57133 1.24720 0.95390 0.97510 1.02937 0.86355 0.78565 0.83939 0.77816 1.21284 1.21825 1.21351 1.19106 0.90736 0.83886 1.43094 0.91227 1.42463 1.05879 0.99357 1.88011 1.20052 0.94233 0.86188 0.91224 0.92814 1.21598 0.98676 0.97299 0.82674 1.45828 1.50290 1.21415 1.17847 1.17776 0.79030 0.85125 0.84041 1.90803 1.55155 1.22222 1.71023 1.19859 0.91622 1.03551 0.96790 1.21274 0.99605 0.95192 0.92468 1.21225 0.96146 0.99906 0.96754 1.21113 0.92674 0.97202 0.99059 1.20813 1.01016 1.02581 0.91188 1.17420 0.86866 0.99035 0.87750 1.48033 1.05936 1.46396 1.10459 1.23451 0.84125 1.04154 1.02276 1.23217 1.00916 1.09324 0.89229 1.74437 0.97006 1.12669 1.27009 1.82721 1.15121 1.15585 0.84496 1.23034 0.92129 1.03004 0.99848 1.22956 0.97330 0.99801 1.03318 1.22773 1.03449 0.93996 0.99094 0.93501 0.77959 0.91677 0.91454 0.75502 0.84087 0.84544 0.84453 0.84589 0.79126 0.79592 0.89085 0.89593 0.90121 0.90264 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.09 8.63 -15.06 -0.13 -6.22 16 8 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 9 N -0.72 -16.76 4.54 -53.42 -0.24 -17.00 16 10 C 0.19 3.69 2.70 -67.93 -0.18 3.50 16 11 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 12 C 0.12 2.20 5.22 -4.04 -0.02 2.17 16 13 N -0.70 -12.36 5.36 -61.32 -0.33 -12.69 16 14 C 0.56 10.00 5.98 -12.43 -0.07 9.93 16 15 O -0.52 -10.84 14.47 5.30 0.08 -10.76 16 16 C -0.11 -1.68 5.66 -104.82 -0.59 -2.28 16 17 C -0.07 -0.75 9.71 -39.20 -0.38 -1.14 16 18 C -0.12 -1.06 10.02 -39.62 -0.40 -1.46 16 19 C -0.08 -0.66 10.03 -39.53 -0.40 -1.05 16 20 C -0.13 -1.32 9.47 -39.46 -0.37 -1.69 16 21 C 0.18 2.58 6.69 -83.32 -0.56 2.02 16 22 N -0.33 -5.10 3.81 -10.32 -0.04 -5.14 16 23 C 0.01 0.10 10.91 -16.72 -0.18 -0.09 16 24 C -0.07 -0.95 11.86 -18.04 -0.21 -1.17 16 25 N -0.24 -4.36 12.33 30.09 0.37 -3.99 16 26 N 0.00 -0.02 9.52 60.35 0.57 0.56 16 27 C -0.16 -2.86 5.36 -90.62 -0.49 -3.34 16 28 C -0.20 -3.05 10.18 -26.69 -0.27 -3.32 16 29 C -0.16 -2.83 9.78 -26.69 -0.26 -3.10 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.41 7.21 8.07 -40.82 -0.33 6.88 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 38 H 0.14 0.90 6.88 -52.49 -0.36 0.54 16 39 H 0.19 1.17 7.22 -52.48 -0.38 0.80 16 40 H 0.19 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.09 1.64 8.11 -51.93 -0.42 1.22 16 42 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.10 2.10 6.23 -51.92 -0.32 1.78 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -34.79 381.87 -8.59 -43.38 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -5.84 Total: 17.38 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -4.62 Total: -7.57 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: 1.06 Total: -64.79 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.79 -8.59 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265382367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.567 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds