Wall clock time and date at job start Sat Apr 11 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00121 * 2 1 4 4 H 1.48501 * 109.47403 * 239.99985 * 3 2 1 5 5 H 1.48509 * 109.46992 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47465 * 119.99682 * 3 2 1 7 7 C 1.38819 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99671 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99752 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47007 * 324.99797 * 10 9 7 12 12 C 1.53000 * 109.47028 * 205.00074 * 10 9 7 13 13 N 1.46500 * 109.46984 * 54.99799 * 12 10 9 14 14 C 1.34780 * 119.99918 * 180.02562 * 13 12 10 15 15 O 1.21580 * 119.99636 * 359.97438 * 14 13 12 16 16 C 1.47616 * 119.99945 * 180.02562 * 14 13 12 17 17 C 1.39626 * 120.19121 * 353.75622 * 16 14 13 18 18 C 1.37864 * 119.91479 * 179.97438 * 17 16 14 19 19 C 1.38500 * 120.30251 * 0.02562 * 18 17 16 20 20 C 1.38104 * 120.38594 * 359.71774 * 19 18 17 21 21 C 1.38713 * 120.07475 * 0.56227 * 20 19 18 22 22 N 1.39809 * 120.15091 * 179.71677 * 21 20 19 23 23 C 1.36327 * 126.86740 * 301.28927 * 22 21 20 24 24 C 1.34956 * 106.77586 * 180.24040 * 23 22 21 25 25 N 1.33378 * 109.01841 * 359.60519 * 24 23 22 26 26 N 1.28764 * 109.93123 * 0.41044 * 25 24 23 27 27 C 1.53001 * 109.47091 * 84.99774 * 10 9 7 28 28 C 1.52998 * 117.49939 * 8.74960 * 27 10 9 29 29 C 1.52997 * 117.50262 * 300.09005 * 27 10 9 30 30 H 0.96997 * 120.00152 * 0.02562 * 1 2 3 31 31 H 0.96994 * 119.99764 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46979 * 295.00030 * 12 10 9 33 33 H 1.08995 * 109.47044 * 174.99769 * 12 10 9 34 34 H 0.96994 * 120.00248 * 0.02562 * 13 12 10 35 35 H 1.07998 * 120.04409 * 359.95776 * 17 16 14 36 36 H 1.08003 * 119.84172 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.80491 * 180.02562 * 19 18 17 38 38 H 1.08005 * 119.96135 * 180.29705 * 20 19 18 39 39 H 1.07999 * 126.60852 * 359.97438 * 23 22 21 40 40 H 1.07999 * 125.49139 * 179.74125 * 24 23 22 41 41 H 1.09000 * 115.54690 * 154.41045 * 27 10 9 42 42 H 1.09000 * 117.49795 * 359.97438 * 28 27 10 43 43 H 1.09004 * 117.50015 * 145.01807 * 28 27 10 44 44 H 1.09001 * 117.50049 * 214.98342 * 29 27 10 45 45 H 1.09000 * 117.49536 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0017 11 1 2.9692 -3.5508 -0.5871 12 6 1.1814 -4.7525 -0.6082 13 7 0.7358 -4.3363 -1.9403 14 6 -0.0535 -5.1485 -2.6711 15 8 -0.3953 -6.2266 -2.2249 16 6 -0.5020 -4.7294 -4.0135 17 6 -0.2210 -3.4430 -4.4780 18 6 -0.6421 -3.0578 -5.7329 19 6 -1.3440 -3.9412 -6.5362 20 6 -1.6242 -5.2183 -6.0915 21 6 -1.2130 -5.6206 -4.8292 22 7 -1.5010 -6.9111 -4.3751 23 6 -2.7352 -7.4740 -4.2393 24 6 -2.5435 -8.7237 -3.7673 25 7 -1.2350 -8.9374 -3.6216 26 7 -0.5773 -7.8859 -3.9678 27 6 2.4209 -4.0350 1.4391 28 6 1.8114 -3.1975 2.5652 29 6 3.2977 -3.0592 2.2265 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 0.3133 -4.9201 0.0294 33 1 1.7564 -5.6749 -0.6891 34 1 1.0087 -3.4764 -2.2963 35 1 0.3254 -2.7505 -3.8548 36 1 -0.4245 -2.0623 -6.0908 37 1 -1.6697 -3.6311 -7.5182 38 1 -2.1677 -5.9031 -6.7255 39 1 -3.6836 -7.0080 -4.4621 40 1 -3.3238 -9.4368 -3.5455 41 1 2.5619 -5.0999 1.6237 42 1 1.1523 -2.3769 2.2819 43 1 1.5519 -3.7114 3.4908 44 1 4.0155 -3.4822 2.9293 45 1 3.6164 -2.1481 1.7203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265382368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:19 Heat of formation + Delta-G solvation = 153.064615 kcal Electronic energy + Delta-G solvation = -29443.959884 eV Core-core repulsion = 25465.977670 eV Total energy + Delta-G solvation = -3977.982214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.01158 -40.10849 -38.54124 -37.52699 -34.82349 -34.16174 -33.30321 -31.90718 -30.75128 -30.57141 -29.69013 -28.11073 -24.81812 -23.90365 -23.59211 -22.66627 -21.74199 -21.56870 -21.28057 -20.25732 -19.23189 -18.58078 -17.62702 -17.11233 -16.29618 -15.57083 -15.41235 -15.26629 -15.06220 -14.85118 -14.66180 -14.53864 -14.35414 -14.10085 -13.75967 -13.65899 -13.04781 -12.99315 -12.82544 -12.35817 -12.05632 -11.81374 -11.62557 -11.31539 -11.19928 -11.08251 -10.92360 -10.89359 -10.57387 -10.53218 -10.19831 -9.81607 -9.70575 -9.48292 -9.36260 -9.27674 -9.19323 -9.03227 -8.79870 -8.63857 -7.13392 -5.89808 -3.20162 0.41888 0.79374 1.57923 2.24166 2.73181 2.86599 3.33634 3.37562 3.40202 3.41232 3.62215 4.41912 4.44861 4.48576 4.57408 4.61313 4.72989 4.88115 5.02306 5.03396 5.17322 5.25690 5.33344 5.41216 5.49026 5.51751 5.55774 5.71815 5.82544 5.87268 5.91479 5.95664 6.02686 6.06776 6.09567 6.21048 6.32636 6.37093 6.42981 6.62562 6.70905 6.83413 6.86423 6.98044 7.25117 7.59712 7.83344 8.27141 8.32287 8.47519 9.39585 9.93054 10.29812 11.31399 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003414 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.797686 B = 8199.766481 C =10013.596845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.058 0.942 12 C 0.122 3.878 13 N -0.703 5.703 14 C 0.547 3.453 15 O -0.527 6.527 16 C -0.109 4.109 17 C -0.068 4.068 18 C -0.110 4.110 19 C -0.086 4.086 20 C -0.120 4.120 21 C 0.175 3.825 22 N -0.316 5.316 23 C 0.021 3.979 24 C -0.078 4.078 25 N -0.244 5.244 26 N -0.013 5.013 27 C -0.178 4.178 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.408 0.592 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.188 0.812 40 H 0.183 0.817 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -8.622 -12.447 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.081 3.919 11 H 0.076 0.924 12 C -0.002 4.002 13 N -0.356 5.356 14 C 0.333 3.667 15 O -0.404 6.404 16 C -0.114 4.114 17 C -0.087 4.087 18 C -0.129 4.129 19 C -0.104 4.104 20 C -0.140 4.140 21 C 0.083 3.917 22 N -0.100 5.100 23 C -0.128 4.128 24 C -0.232 4.232 25 N -0.115 5.115 26 N 0.009 4.991 27 C -0.199 4.199 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.246 0.754 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.205 0.795 40 H 0.200 0.800 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.380 -9.600 -11.885 15.647 hybrid contribution -0.864 1.837 -0.029 2.030 sum -4.245 -7.764 -11.914 14.840 Atomic orbital electron populations 1.69645 1.05013 1.25871 1.57069 1.24696 0.95394 0.97495 1.02722 0.86355 0.78611 0.83803 0.77916 1.21307 1.21791 1.21236 1.19135 0.90911 0.83793 1.43377 0.91085 1.42477 1.05810 0.99480 1.88169 1.20002 0.94076 0.85991 0.91816 0.92435 1.21596 0.98836 0.97564 0.82245 1.45848 1.50197 1.21558 1.17951 1.17962 0.79640 0.84670 0.84470 1.90833 1.56309 1.21571 1.71727 1.20145 1.01663 0.94356 0.95246 1.21534 0.96994 0.94067 0.96153 1.21335 0.97248 1.00486 0.93795 1.21216 0.96821 0.92294 1.00114 1.21068 1.01968 0.97735 0.93223 1.17276 1.00256 0.81126 0.93022 1.47527 1.06022 1.10680 1.45751 1.23431 0.90266 0.95421 1.03708 1.23066 0.94199 0.96955 1.09014 1.74276 1.05405 1.18325 1.13493 1.82168 1.12046 0.90642 1.14284 1.23051 1.06026 0.95415 0.95448 1.22909 0.96700 1.03477 0.96892 1.22845 0.93486 1.01828 1.03000 0.93393 0.77965 0.91643 0.91597 0.75420 0.83589 0.84257 0.84394 0.84629 0.79537 0.80030 0.89589 0.86372 0.91287 0.91000 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.41 13.06 55.49 0.72 -24.68 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.24 -5.83 8.15 -15.06 -0.12 -5.95 16 8 H 0.07 1.70 6.91 -52.48 -0.36 1.34 16 9 N -0.72 -15.51 3.08 -53.42 -0.16 -15.68 16 10 C 0.19 3.50 2.86 -67.93 -0.19 3.31 16 11 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 12 C 0.12 2.11 5.22 -4.04 -0.02 2.09 16 13 N -0.70 -11.78 5.34 -61.32 -0.33 -12.10 16 14 C 0.55 9.55 7.72 -12.43 -0.10 9.46 16 15 O -0.53 -10.77 13.25 5.30 0.07 -10.70 16 16 C -0.11 -1.57 5.89 -104.82 -0.62 -2.19 16 17 C -0.07 -0.81 9.52 -39.20 -0.37 -1.19 16 18 C -0.11 -1.00 10.02 -39.62 -0.40 -1.40 16 19 C -0.09 -0.67 10.03 -39.53 -0.40 -1.07 16 20 C -0.12 -1.13 9.83 -39.46 -0.39 -1.52 16 21 C 0.18 2.32 6.19 -83.32 -0.52 1.81 16 22 N -0.32 -4.65 2.59 -10.32 -0.03 -4.68 16 23 C 0.02 0.25 11.48 -16.72 -0.19 0.06 16 24 C -0.08 -0.99 11.86 -18.05 -0.21 -1.20 16 25 N -0.24 -4.10 12.33 30.09 0.37 -3.73 16 26 N -0.01 -0.23 11.37 60.35 0.69 0.46 16 27 C -0.18 -3.12 5.71 -90.62 -0.52 -3.64 16 28 C -0.16 -3.05 9.74 -26.70 -0.26 -3.31 16 29 C -0.17 -3.11 9.87 -26.70 -0.26 -3.38 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 9.22 7.80 -40.82 -0.32 8.90 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.41 6.63 6.21 -40.82 -0.25 6.37 16 35 H 0.15 1.75 6.45 -52.49 -0.34 1.41 16 36 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 42 H 0.12 2.64 6.68 -51.93 -0.35 2.29 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.10 2.03 6.22 -51.93 -0.32 1.70 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -31.89 379.10 -8.37 -40.26 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -5.72 Total: 17.84 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -4.66 Total: -8.38 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 1.26 Total: -60.42 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.89 -8.37 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265382368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.321 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds