Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.88297 * 54.29798 * 11 10 9 13 13 C 1.55155 * 111.00636 * 178.17734 * 11 10 9 14 14 C 1.54370 * 102.92232 * 153.54921 * 13 11 10 15 15 N 1.47024 * 107.28431 * 337.85920 * 14 13 11 16 16 C 1.34779 * 125.64243 * 178.93995 * 15 14 13 17 17 O 1.21608 * 119.99411 * 179.97438 * 16 15 14 18 18 C 1.47410 * 120.00381 * 359.96575 * 16 15 14 19 19 C 1.41325 * 126.40829 * 359.68860 * 18 16 15 20 20 N 1.30482 * 108.06681 * 179.81785 * 19 18 16 21 21 N 1.39942 * 108.91227 * 0.44243 * 20 19 18 22 22 C 1.40166 * 125.77109 * 179.67686 * 21 20 19 23 23 C 1.39262 * 120.48447 * 4.76786 * 22 21 20 24 24 C 1.38513 * 118.36118 * 179.73259 * 23 22 21 25 25 C 1.38268 * 119.23419 * 0.53840 * 24 23 22 26 26 N 1.31866 * 120.90595 * 359.71985 * 25 24 23 27 27 C 1.31814 * 121.79691 * 0.02562 * 26 25 24 28 28 C 1.34532 * 108.45373 * 359.71500 * 21 20 19 29 29 C 1.47418 * 108.70424 * 358.91287 * 15 14 13 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09003 * 110.71924 * 271.94020 * 13 11 10 35 35 H 1.09002 * 110.71738 * 35.21438 * 13 11 10 36 36 H 1.09004 * 109.89866 * 218.42730 * 14 13 11 37 37 H 1.08994 * 109.97701 * 97.34322 * 14 13 11 38 38 H 1.08001 * 125.96606 * 359.97438 * 19 18 16 39 39 H 1.08002 * 120.81913 * 359.97438 * 23 22 21 40 40 H 1.08001 * 120.38222 * 180.23825 * 24 23 22 41 41 H 1.07997 * 119.54472 * 179.74334 * 25 24 23 42 42 H 1.08001 * 119.66215 * 179.97438 * 27 26 25 43 43 H 1.08009 * 126.30375 * 179.97438 * 28 21 20 44 44 H 1.09006 * 110.36640 * 265.28748 * 29 15 14 45 45 H 1.08998 * 110.46083 * 143.01279 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3598 -4.7286 -0.8295 13 6 1.8027 -6.1832 -0.0483 14 6 0.7990 -7.1428 0.6260 15 7 -0.0960 -6.3249 1.4577 16 6 -1.1250 -6.7884 2.1945 17 8 -1.8012 -6.0168 2.8475 18 6 -1.4309 -8.2303 2.2088 19 6 -0.7423 -9.2409 1.5004 20 7 -1.3083 -10.3843 1.7741 21 7 -2.3772 -10.1632 2.6499 22 6 -3.2307 -11.1479 3.1659 23 6 -2.9986 -12.4948 2.8986 24 6 -3.8666 -13.4312 3.4354 25 6 -4.9330 -13.0013 4.2035 26 7 -5.1280 -11.7176 4.4335 27 6 -4.3233 -10.7945 3.9459 28 6 -2.4474 -8.8455 2.9120 29 6 0.3189 -4.9142 1.3527 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 1.9925 -6.4844 -1.0786 35 1 2.7325 -6.1373 0.5187 36 1 1.3329 -7.8595 1.2501 37 1 0.2210 -7.6704 -0.1326 38 1 0.1060 -9.0930 0.8485 39 1 -2.1602 -12.8018 2.2910 40 1 -3.7151 -14.4847 3.2521 41 1 -5.6153 -13.7269 4.6210 42 1 -4.5157 -9.7527 4.1557 43 1 -3.1667 -8.3586 3.5539 44 1 0.9884 -4.6537 2.1725 45 1 -0.5526 -4.2597 1.3529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265983429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = 112.438152 kcal Electronic energy + Delta-G solvation = -27946.487997 eV Core-core repulsion = 23966.744088 eV Total energy + Delta-G solvation = -3979.743909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.26727 -40.58943 -39.69796 -37.56414 -35.03429 -34.61030 -32.94889 -32.44119 -30.86972 -30.37070 -30.10651 -28.59965 -25.84923 -24.63072 -24.40603 -23.74540 -22.43459 -21.85109 -21.34569 -20.13954 -19.80285 -18.62514 -17.57596 -17.20064 -17.00170 -16.47655 -16.18174 -16.00924 -15.55530 -15.26719 -14.69557 -14.56867 -14.40129 -14.19456 -13.82146 -13.81160 -13.62971 -13.43407 -13.18752 -12.99756 -12.73846 -12.61696 -12.15613 -11.84229 -11.63584 -11.32257 -11.03749 -10.85105 -10.68628 -10.55879 -10.41225 -10.37907 -10.26343 -9.95870 -9.92877 -9.69677 -9.14828 -8.87190 -8.84623 -8.58640 -6.99319 -6.07711 -3.08085 -0.00882 0.51182 1.38264 1.62658 1.77985 2.92843 3.13183 3.28311 3.53594 3.57516 3.72474 3.75113 3.80079 4.00018 4.25438 4.27199 4.38597 4.44146 4.54475 4.66922 4.73939 4.77297 4.84320 4.88943 4.96795 5.08716 5.23315 5.35173 5.36369 5.41232 5.50464 5.64168 5.74726 5.79847 5.84754 5.89901 5.92247 5.94901 6.18382 6.24945 6.37436 6.38621 6.61080 6.73671 6.95267 7.22864 7.51223 7.82078 8.17194 8.78274 9.24737 10.11137 10.25373 11.40688 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029292 B = 0.001814 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.668089 B =15432.584120 C =16249.601370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.045 4.045 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.334 4.334 8 H 0.064 0.936 9 N -0.744 5.744 10 C 0.171 3.829 11 C -0.107 4.107 12 H 0.084 0.916 13 C -0.125 4.125 14 C 0.093 3.907 15 N -0.612 5.612 16 C 0.605 3.395 17 O -0.541 6.541 18 C -0.267 4.267 19 C 0.082 3.918 20 N -0.293 5.293 21 N -0.313 5.313 22 C 0.105 3.895 23 C -0.071 4.071 24 C -0.147 4.147 25 C 0.089 3.911 26 N -0.456 5.456 27 C 0.090 3.910 28 C 0.126 3.874 29 C 0.118 3.882 30 H 0.255 0.745 31 H 0.367 0.633 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.208 0.792 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.195 0.805 44 H 0.073 0.927 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -31.135 4.787 31.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.243 4.243 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.465 4.465 8 H 0.082 0.918 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.103 0.897 13 C -0.164 4.164 14 C -0.030 4.030 15 N -0.345 5.345 16 C 0.394 3.606 17 O -0.420 6.420 18 C -0.281 4.281 19 C -0.106 4.106 20 N -0.110 5.110 21 N -0.086 5.086 22 C 0.011 3.989 23 C -0.099 4.099 24 C -0.167 4.167 25 C -0.068 4.068 26 N -0.164 5.164 27 C -0.070 4.070 28 C -0.020 4.020 29 C -0.003 4.003 30 H 0.066 0.934 31 H 0.201 0.799 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.224 0.776 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.183 0.817 42 H 0.182 0.818 43 H 0.212 0.788 44 H 0.091 0.909 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.530 -30.133 5.520 31.130 hybrid contribution 0.760 -1.159 -0.476 1.466 sum -4.771 -31.293 5.045 32.054 Atomic orbital electron populations 1.70881 1.06035 1.28474 1.53358 1.25790 0.97062 1.01029 1.00377 0.83236 0.74200 0.75612 0.75811 1.21038 1.22271 1.22289 1.20009 0.92004 0.85804 1.48704 0.91750 1.42368 1.04912 1.00915 1.90791 1.20519 0.92606 0.84285 0.98328 1.22615 0.98196 0.94935 0.96957 0.89736 1.22682 0.98009 0.94336 1.01360 1.22381 0.92011 0.94707 0.93910 1.48267 1.30224 1.09554 1.46465 1.16734 0.79223 0.85791 0.78870 1.90824 1.49844 1.57869 1.43418 1.20321 1.03225 0.94978 1.09582 1.24999 0.99211 0.88773 0.97662 1.77264 1.00158 1.23562 1.09997 1.45533 1.23435 1.04609 1.34993 1.18714 0.92343 0.88569 0.99311 1.21427 1.00045 0.90108 0.98316 1.22166 0.95295 1.01175 0.98113 1.22951 0.96147 0.92500 0.95190 1.67804 1.26960 1.02006 1.19610 1.22677 0.89455 1.00546 0.94358 1.23051 0.98380 0.82893 0.97688 1.22326 0.99780 0.80644 0.97582 0.93354 0.79940 0.95702 0.95913 0.89740 0.90068 0.91086 0.91069 0.77563 0.83091 0.83497 0.81736 0.81798 0.78782 0.90901 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.56 13.70 55.49 0.76 -28.80 16 2 C -0.04 -1.32 5.50 -17.43 -0.10 -1.41 16 3 Si 1.08 26.14 29.92 -169.99 -5.09 21.05 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.30 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.33 -9.48 9.99 -15.06 -0.15 -9.63 16 8 H 0.06 1.79 7.83 -52.49 -0.41 1.37 16 9 N -0.74 -18.61 5.49 -59.91 -0.33 -18.94 16 10 C 0.17 3.28 5.71 -4.05 -0.02 3.25 16 11 C -0.11 -1.61 3.07 -88.48 -0.27 -1.88 16 12 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.13 -1.31 6.42 -24.87 -0.16 -1.46 16 14 C 0.09 0.89 4.99 -3.04 -0.02 0.87 16 15 N -0.61 -8.38 3.33 -171.77 -0.57 -8.95 16 16 C 0.60 9.04 7.85 -12.53 -0.10 8.94 16 17 O -0.54 -10.15 17.16 5.27 0.09 -10.06 16 18 C -0.27 -3.15 6.09 -105.05 -0.64 -3.79 16 19 C 0.08 0.80 10.44 -16.95 -0.18 0.62 16 20 N -0.29 -3.06 11.86 30.87 0.37 -2.69 16 21 N -0.31 -3.11 3.77 -10.11 -0.04 -3.14 16 22 C 0.11 0.89 6.70 -83.45 -0.56 0.33 16 23 C -0.07 -0.49 9.78 -39.10 -0.38 -0.87 16 24 C -0.15 -0.71 10.10 -39.47 -0.40 -1.11 16 25 C 0.09 0.50 11.18 -17.53 -0.20 0.31 16 26 N -0.46 -3.72 10.35 -13.10 -0.14 -3.85 16 27 C 0.09 0.71 10.62 -17.35 -0.18 0.53 16 28 C 0.13 1.30 10.61 -16.43 -0.17 1.13 16 29 C 0.12 1.91 6.23 -2.54 -0.02 1.89 16 30 H 0.26 7.91 6.77 -40.82 -0.28 7.63 16 31 H 0.37 9.48 6.46 -40.82 -0.26 9.21 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.45 8.03 -51.93 -0.42 0.03 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 36 H 0.07 0.54 7.02 -51.93 -0.36 0.17 16 37 H 0.07 0.56 6.80 -51.93 -0.35 0.21 16 38 H 0.21 1.43 4.47 -52.49 -0.23 1.20 16 39 H 0.15 0.97 7.78 -52.49 -0.41 0.56 16 40 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 41 H 0.17 0.45 8.06 -52.49 -0.42 0.02 16 42 H 0.16 1.01 6.76 -52.49 -0.35 0.66 16 43 H 0.20 1.57 7.06 -52.48 -0.37 1.20 16 44 H 0.07 1.24 7.96 -51.93 -0.41 0.82 16 45 H 0.08 1.55 8.04 -51.93 -0.42 1.13 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -37.27 375.73 -8.43 -45.70 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.61 Total: 6.31 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.54 Total: -2.28 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: 0.05 Total: -66.38 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.09 Total: 21.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.27 -8.43 -45.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265983429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.141 kcal (2) G-P(sol) polarization free energy of solvation -37.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds