Wall clock time and date at job start Sat Apr 11 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99711 * 2 1 4 4 H 1.48496 * 109.47060 * 240.00198 * 3 2 1 5 5 H 1.48498 * 109.47196 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46673 * 120.00347 * 3 2 1 7 7 C 1.38810 * 120.00509 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00257 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99616 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00085 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47198 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.88941 * 302.57376 * 11 10 9 13 13 C 1.55160 * 111.00081 * 178.64769 * 11 10 9 14 14 C 1.54316 * 102.86095 * 206.23175 * 13 11 10 15 15 N 1.47025 * 107.27610 * 22.52752 * 14 13 11 16 16 C 1.34776 * 125.64585 * 180.96698 * 15 14 13 17 17 O 1.21606 * 119.99831 * 179.69115 * 16 15 14 18 18 C 1.47410 * 119.99956 * 359.69535 * 16 15 14 19 19 C 1.41336 * 126.41390 * 359.95725 * 18 16 15 20 20 N 1.30471 * 108.06443 * 179.75466 * 19 18 16 21 21 N 1.39936 * 108.92068 * 0.44309 * 20 19 18 22 22 C 1.40174 * 125.77272 * 179.81403 * 21 20 19 23 23 C 1.39260 * 120.48519 * 4.40543 * 22 21 20 24 24 C 1.38504 * 118.36231 * 180.25634 * 23 22 21 25 25 C 1.38274 * 119.23106 * 0.04267 * 24 23 22 26 26 N 1.31858 * 120.91020 * 359.96129 * 25 24 23 27 27 C 1.31809 * 121.79789 * 0.02562 * 26 25 24 28 28 C 1.34536 * 108.45461 * 359.54808 * 21 20 19 29 29 C 1.47416 * 108.70023 * 0.70480 * 15 14 13 30 30 H 0.97004 * 120.00904 * 359.97438 * 1 2 3 31 31 H 0.97005 * 120.00403 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46973 * 59.99489 * 10 9 7 33 33 H 1.08995 * 109.47030 * 300.00103 * 10 9 7 34 34 H 1.08994 * 110.72163 * 324.79365 * 13 11 10 35 35 H 1.09002 * 110.71482 * 87.88913 * 13 11 10 36 36 H 1.09002 * 109.98534 * 263.04865 * 14 13 11 37 37 H 1.09002 * 109.77596 * 141.89014 * 14 13 11 38 38 H 1.07997 * 125.96120 * 0.06645 * 19 18 16 39 39 H 1.07998 * 120.81596 * 0.26203 * 23 22 21 40 40 H 1.08006 * 120.38608 * 180.02562 * 24 23 22 41 41 H 1.08005 * 119.53992 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.66955 * 179.97438 * 27 26 25 43 43 H 1.07997 * 126.31002 * 180.23338 * 28 21 20 44 44 H 1.08999 * 110.37153 * 94.93941 * 29 15 14 45 45 H 1.09002 * 110.36711 * 217.14818 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3950 -4.7586 0.8585 13 6 1.8033 -6.1834 -0.0341 14 6 0.7686 -7.1186 -0.6944 15 7 -0.1564 -6.2730 -1.4631 16 6 -1.2161 -6.7106 -2.1716 17 8 -1.9190 -5.9168 -2.7672 18 6 -1.5232 -8.1514 -2.2244 19 6 -0.8016 -9.1869 -1.5883 20 7 -1.3864 -10.3190 -1.8689 21 7 -2.4882 -10.0682 -2.6944 22 6 -3.3631 -11.0347 -3.2093 23 6 -3.2346 -12.3717 -2.8413 24 6 -4.1195 -13.2905 -3.3808 25 6 -5.0929 -12.8544 -4.2606 26 7 -5.1877 -11.5808 -4.5889 27 6 -4.3664 -10.6741 -4.0983 28 6 -2.5692 -8.7419 -2.9053 29 6 0.2636 -4.8666 -1.3254 30 1 -0.4852 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6849 -3.7144 0.8894 33 1 2.6848 -3.7144 -0.8905 34 1 2.7084 -6.1163 -0.6375 35 1 2.0387 -6.5197 0.9757 36 1 0.2200 -7.6671 0.0714 37 1 1.2749 -7.8161 -1.3618 38 1 0.0771 -9.0622 -0.9729 39 1 -2.4641 -12.6842 -2.1521 40 1 -4.0498 -14.3357 -3.1176 41 1 -5.7853 -13.5667 -4.6846 42 1 -4.4749 -9.6402 -4.3911 43 1 -3.3146 -8.2330 -3.4983 44 1 0.8986 -4.5766 -2.1624 45 1 -0.6078 -4.2144 -1.2675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265983430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:24 Heat of formation + Delta-G solvation = 112.268352 kcal Electronic energy + Delta-G solvation = -27915.627058 eV Core-core repulsion = 23935.875786 eV Total energy + Delta-G solvation = -3979.751272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22725 -40.55602 -39.62832 -37.48197 -34.86887 -34.47593 -32.91872 -32.27752 -30.83923 -30.42379 -30.05755 -28.64208 -25.93975 -24.63817 -24.43467 -23.79934 -22.26025 -21.80552 -21.27388 -20.03194 -19.73657 -18.57896 -17.53924 -17.07020 -16.94177 -16.33608 -16.12546 -15.95991 -15.47435 -15.17555 -14.71204 -14.51764 -14.41694 -14.14399 -13.79692 -13.69483 -13.52788 -13.20054 -13.15051 -12.83953 -12.65483 -12.52621 -12.06458 -11.70109 -11.59222 -11.30289 -11.24589 -10.83450 -10.63600 -10.59300 -10.43084 -10.35346 -10.23686 -10.04008 -9.86004 -9.65769 -9.65638 -8.85806 -8.80440 -8.50964 -6.91035 -5.73484 -3.03085 0.02118 0.53680 1.42403 1.66339 1.82337 3.00218 3.15919 3.34429 3.46337 3.50497 3.51939 3.75531 3.83447 4.02714 4.28289 4.31004 4.42371 4.49697 4.61290 4.62208 4.76840 4.80761 4.90117 4.95462 5.00005 5.14303 5.31823 5.39214 5.42085 5.43931 5.59312 5.62086 5.77750 5.87253 5.91306 5.98844 6.00951 6.12109 6.28671 6.40639 6.42180 6.47043 6.69464 6.83351 6.99245 7.25356 7.58993 7.71394 8.24346 8.44595 9.55807 10.12800 10.47024 11.49026 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028701 B = 0.001820 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.355686 B =15379.085295 C =16217.419372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.106 4.106 12 H 0.085 0.915 13 C -0.126 4.126 14 C 0.093 3.907 15 N -0.612 5.612 16 C 0.604 3.396 17 O -0.541 6.541 18 C -0.266 4.266 19 C 0.082 3.918 20 N -0.293 5.293 21 N -0.313 5.313 22 C 0.106 3.894 23 C -0.072 4.072 24 C -0.147 4.147 25 C 0.089 3.911 26 N -0.456 5.456 27 C 0.090 3.910 28 C 0.126 3.874 29 C 0.118 3.882 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.024 0.976 33 H 0.022 0.978 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.208 0.792 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.195 0.805 44 H 0.073 0.927 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.276 -30.743 -4.812 31.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.165 4.165 14 C -0.030 4.030 15 N -0.345 5.345 16 C 0.393 3.607 17 O -0.419 6.419 18 C -0.280 4.280 19 C -0.106 4.106 20 N -0.110 5.110 21 N -0.086 5.086 22 C 0.011 3.989 23 C -0.099 4.099 24 C -0.168 4.168 25 C -0.068 4.068 26 N -0.164 5.164 27 C -0.071 4.071 28 C -0.021 4.021 29 C -0.003 4.003 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.225 0.775 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.182 0.818 42 H 0.182 0.818 43 H 0.212 0.788 44 H 0.091 0.909 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.268 -31.265 -5.625 32.379 hybrid contribution 0.899 1.513 0.579 1.853 sum -5.369 -29.752 -5.046 30.651 Atomic orbital electron populations 1.69645 1.05103 1.25827 1.57394 1.24749 0.95505 0.97707 1.02897 0.86269 0.78510 0.83586 0.77801 1.21269 1.21708 1.21300 1.19162 0.90981 0.84148 1.43119 0.91211 1.42358 1.05913 0.99907 1.89558 1.20588 0.92723 0.84818 0.98195 1.22593 0.97847 0.94753 0.97334 0.89660 1.22680 0.97715 0.94709 1.01374 1.22362 0.91419 0.94374 0.94848 1.48284 1.27519 1.09358 1.49342 1.16722 0.79472 0.85910 0.78586 1.90825 1.49341 1.56344 1.45398 1.20351 1.01817 0.94865 1.10971 1.25003 0.99368 0.88723 0.97534 1.77252 0.98537 1.23728 1.11532 1.45533 1.21578 1.04319 1.37204 1.18715 0.92606 0.89092 0.98449 1.21423 0.99341 0.90316 0.98851 1.22163 0.95513 1.01200 0.97879 1.22945 0.96782 0.92446 0.94671 1.67795 1.23690 1.02367 1.22537 1.22676 0.90462 1.00549 0.93380 1.23053 0.98680 0.82864 0.97493 1.22338 0.99692 0.80653 0.97641 0.93409 0.78173 0.95814 0.96013 0.90103 0.89839 0.91120 0.91172 0.77549 0.83096 0.83519 0.81764 0.81790 0.78798 0.90882 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.26 5.45 -59.91 -0.33 -18.59 16 10 C 0.16 3.12 5.71 -4.04 -0.02 3.10 16 11 C -0.11 -1.58 3.10 -88.47 -0.27 -1.86 16 12 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.13 -1.31 6.42 -24.90 -0.16 -1.47 16 14 C 0.09 0.90 4.97 -3.07 -0.02 0.88 16 15 N -0.61 -8.47 3.33 -171.80 -0.57 -9.04 16 16 C 0.60 9.14 7.85 -12.53 -0.10 9.04 16 17 O -0.54 -10.26 17.15 5.27 0.09 -10.17 16 18 C -0.27 -3.17 6.09 -105.05 -0.64 -3.81 16 19 C 0.08 0.81 10.45 -16.95 -0.18 0.63 16 20 N -0.29 -3.09 11.86 30.87 0.37 -2.72 16 21 N -0.31 -3.14 3.77 -10.11 -0.04 -3.18 16 22 C 0.11 0.91 6.70 -83.45 -0.56 0.35 16 23 C -0.07 -0.50 9.78 -39.10 -0.38 -0.88 16 24 C -0.15 -0.72 10.10 -39.47 -0.40 -1.12 16 25 C 0.09 0.51 11.18 -17.53 -0.20 0.31 16 26 N -0.46 -3.76 10.35 -13.10 -0.14 -3.89 16 27 C 0.09 0.72 10.62 -17.35 -0.18 0.53 16 28 C 0.13 1.31 10.61 -16.43 -0.17 1.14 16 29 C 0.12 1.93 6.08 -2.54 -0.02 1.92 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.38 10.18 7.53 -40.82 -0.31 9.87 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.56 6.86 -51.93 -0.36 0.21 16 37 H 0.07 0.54 6.97 -51.93 -0.36 0.17 16 38 H 0.21 1.45 4.47 -52.49 -0.23 1.22 16 39 H 0.15 0.98 7.78 -52.49 -0.41 0.58 16 40 H 0.15 0.29 8.06 -52.48 -0.42 -0.14 16 41 H 0.17 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.17 1.03 6.76 -52.49 -0.35 0.67 16 43 H 0.20 1.60 7.06 -52.49 -0.37 1.23 16 44 H 0.07 1.25 8.00 -51.93 -0.42 0.84 16 45 H 0.08 1.64 8.03 -51.93 -0.42 1.22 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -36.08 377.29 -8.50 -44.58 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.72 Total: 6.21 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -3.54 Total: 1.37 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: 0.02 Total: -65.14 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.08 -8.50 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265983430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.844 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds