Wall clock time and date at job start Sat Apr 11 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99789 * 2 1 4 4 H 1.48502 * 109.46813 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47011 * 30.00300 * 3 2 1 6 6 H 1.48504 * 109.46750 * 150.00262 * 3 2 1 7 7 C 1.38808 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99917 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00064 * 179.97438 * 7 2 1 10 10 C 1.46508 * 119.99805 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46807 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.91988 * 51.09511 * 11 10 9 13 13 C 1.55157 * 111.00230 * 175.00251 * 11 10 9 14 14 C 1.54321 * 103.10033 * 153.66249 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.34777 * 125.65068 * 178.90607 * 15 14 13 17 17 O 1.21549 * 119.99803 * 180.02562 * 16 15 14 18 18 C 1.47931 * 119.99710 * 0.02562 * 16 15 14 19 19 C 1.39512 * 119.59217 * 179.72727 * 18 16 15 20 20 C 1.38225 * 119.18645 * 179.74983 * 19 18 16 21 21 C 1.39790 * 118.39074 * 0.51248 * 20 19 18 22 22 C 1.48269 * 120.44106 * 179.77069 * 21 20 19 23 23 C 1.40948 * 126.24660 * 359.66798 * 22 21 20 24 24 N 1.30631 * 108.07241 * 179.81651 * 23 22 21 25 25 N 1.40008 * 108.56391 * 0.44586 * 24 23 22 26 26 H 0.96998 * 125.87336 * 179.71741 * 25 24 23 27 27 C 1.34723 * 108.25758 * 359.71177 * 25 24 23 28 28 C 1.39744 * 119.11911 * 359.75198 * 21 20 19 29 29 N 1.31303 * 120.73163 * 359.97438 * 28 21 20 30 30 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 31 31 H 0.96998 * 119.99980 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99873 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.46564 * 60.00176 * 10 9 7 34 34 H 1.08993 * 109.47195 * 300.00058 * 10 9 7 35 35 H 1.09002 * 110.72219 * 35.20946 * 13 11 10 36 36 H 1.09003 * 110.71618 * 272.11558 * 13 11 10 37 37 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 38 38 H 1.09004 * 109.87910 * 218.29695 * 14 13 11 39 39 H 1.07996 * 120.40355 * 0.02562 * 19 18 16 40 40 H 1.07996 * 120.80731 * 180.26138 * 20 19 18 41 41 H 1.07999 * 125.96407 * 0.02562 * 23 22 21 42 42 H 1.07996 * 126.19612 * 180.02562 * 27 25 24 43 43 H 1.08009 * 119.63342 * 179.97438 * 28 21 20 44 44 H 1.08999 * 110.36190 * 142.96411 * 30 15 14 45 45 H 1.08998 * 110.36491 * 265.18090 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6164 -2.1913 0.0000 12 1 5.8822 -1.4915 0.7923 13 6 6.4268 -3.5083 0.1262 14 6 7.7686 -3.1597 -0.5517 15 7 7.5206 -2.0246 -1.4527 16 6 8.4470 -1.4087 -2.2136 17 8 8.1273 -0.4756 -2.9239 18 6 9.8528 -1.8684 -2.1842 19 6 10.8036 -1.2284 -2.9795 20 6 12.1158 -1.6614 -2.9416 21 6 12.4367 -2.7380 -2.1097 22 6 13.8289 -3.2428 -2.0378 23 6 14.9347 -2.7428 -2.7545 24 7 15.9850 -3.4438 -2.4200 25 7 15.5943 -4.4173 -1.4926 26 1 16.1752 -5.0764 -1.0816 27 6 14.2727 -4.2811 -1.2693 28 6 11.4279 -3.3318 -1.3464 29 7 10.1933 -2.8888 -1.4050 30 6 6.0909 -1.6712 -1.3853 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3621 -0.0004 33 1 3.8484 -3.0425 -0.8897 34 1 3.8492 -3.0422 0.8902 35 1 5.9274 -4.3206 -0.4020 36 1 6.5799 -3.7680 1.1737 37 1 8.5037 -2.8802 0.2030 38 1 8.1283 -4.0152 -1.1235 39 1 10.5188 -0.4019 -3.6137 40 1 12.8739 -1.1822 -3.5432 41 1 14.9175 -1.9212 -3.4552 42 1 13.6731 -4.8836 -0.6032 43 1 11.6665 -4.1644 -0.7011 44 1 5.9640 -0.5905 -1.4481 45 1 5.5401 -2.1644 -2.1862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265990610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:27 Heat of formation + Delta-G solvation = 101.629937 kcal Electronic energy + Delta-G solvation = -27961.661339 eV Core-core repulsion = 23981.448750 eV Total energy + Delta-G solvation = -3980.212589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90118 -40.75399 -39.32811 -37.56841 -34.84708 -33.91167 -32.37622 -32.23708 -31.93255 -30.71291 -29.47387 -28.74165 -26.11436 -24.56341 -24.32616 -23.08957 -22.15121 -21.63000 -21.03021 -20.35223 -19.89125 -18.81008 -17.81014 -17.29440 -16.80188 -16.07485 -15.76862 -15.53036 -15.39344 -15.22876 -14.95804 -14.53557 -14.39188 -13.92642 -13.79391 -13.74395 -13.54231 -13.37667 -12.89687 -12.69184 -12.63881 -12.42017 -12.17986 -11.78492 -11.63221 -11.49510 -10.91006 -10.83786 -10.65211 -10.59403 -10.46262 -10.35617 -10.23351 -10.06168 -9.96821 -9.64894 -9.54960 -8.86153 -8.62844 -8.43101 -7.19911 -5.73211 -3.08792 0.12047 0.89416 1.29094 2.08764 2.20105 2.81180 2.91788 3.42934 3.46742 3.50726 3.67606 3.79986 3.97851 4.14225 4.36992 4.38985 4.47765 4.63749 4.70527 4.73054 4.79333 4.83985 4.93678 5.03236 5.23456 5.36061 5.40016 5.50391 5.58415 5.63621 5.75404 5.78558 5.83326 5.87579 5.89401 5.95760 6.09671 6.17764 6.20675 6.25484 6.42959 6.53521 6.64748 6.76510 6.94488 7.39052 7.54563 8.02411 8.11641 8.45705 9.24699 9.97321 10.16661 11.45103 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027797 B = 0.001944 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.050689 B =14400.594558 C =15100.722010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.169 3.831 11 C -0.109 4.109 12 H 0.084 0.916 13 C -0.130 4.130 14 C 0.121 3.879 15 N -0.598 5.598 16 C 0.578 3.422 17 O -0.537 6.537 18 C 0.074 3.926 19 C -0.099 4.099 20 C -0.085 4.085 21 C -0.024 4.024 22 C -0.205 4.205 23 C 0.072 3.928 24 N -0.291 5.291 25 N -0.470 5.470 26 H 0.444 0.556 27 C 0.085 3.915 28 C 0.092 3.908 29 N -0.443 5.443 30 C 0.111 3.889 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.189 0.811 42 H 0.185 0.815 43 H 0.159 0.841 44 H 0.079 0.921 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.687 -11.886 -2.244 36.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.042 3.958 11 C -0.129 4.129 12 H 0.102 0.898 13 C -0.169 4.169 14 C -0.002 4.002 15 N -0.330 5.330 16 C 0.366 3.634 17 O -0.414 6.414 18 C -0.064 4.064 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.028 4.028 22 C -0.217 4.217 23 C -0.116 4.116 24 N -0.112 5.112 25 N -0.176 5.176 26 H 0.288 0.712 27 C -0.064 4.064 28 C -0.069 4.069 29 N -0.154 5.154 30 C -0.011 4.011 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.205 0.795 42 H 0.202 0.798 43 H 0.176 0.824 44 H 0.097 0.903 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 34.907 -11.979 -2.355 36.980 hybrid contribution 0.641 1.347 -0.095 1.494 sum 35.547 -10.632 -2.450 37.184 Atomic orbital electron populations 1.69701 1.05098 1.25808 1.57611 1.24662 0.95226 0.97196 1.01984 0.86575 0.79189 0.84991 0.77961 1.20917 1.21738 1.20341 1.19048 0.80605 0.94732 1.43036 0.89175 1.42735 1.04101 1.02210 1.91201 1.20568 0.86743 0.89457 0.99040 1.22717 0.96900 0.96954 0.96330 0.89767 1.22757 0.94817 0.97925 1.01403 1.22091 0.96974 0.88482 0.92676 1.48361 1.09178 1.33222 1.42230 1.17474 0.83552 0.82312 0.80103 1.90819 1.80614 1.28664 1.41271 1.21078 0.94611 0.94475 0.96255 1.22041 0.92345 0.99807 0.97778 1.21497 0.96257 0.95521 0.97833 1.19237 0.91855 0.95301 0.96357 1.18774 0.93587 1.02646 1.06738 1.24065 0.89253 0.99238 0.99014 1.77295 1.23225 1.02765 1.07938 1.46273 1.07489 1.28478 1.35329 0.71159 1.22729 0.85849 0.98315 0.99529 1.22764 0.87254 0.99139 0.97739 1.67765 1.19718 1.10535 1.17334 1.22512 0.78921 1.01732 0.97901 0.93084 0.80632 0.95107 0.94914 0.90341 0.89988 0.90774 0.90863 0.83246 0.84090 0.79455 0.79805 0.82414 0.90257 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.72 13.97 55.49 0.78 -28.95 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.72 27.74 -169.99 -4.71 18.01 16 4 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.74 6.52 56.52 0.37 -6.38 16 7 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 N -0.76 -18.08 5.36 -59.91 -0.32 -18.40 16 10 C 0.17 3.17 5.73 -4.04 -0.02 3.15 16 11 C -0.11 -1.64 3.07 -88.21 -0.27 -1.91 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.13 -1.47 6.40 -24.90 -0.16 -1.63 16 14 C 0.12 1.37 5.39 -3.07 -0.02 1.35 16 15 N -0.60 -8.67 3.33 -171.29 -0.57 -9.24 16 16 C 0.58 8.88 7.83 -12.29 -0.10 8.78 16 17 O -0.54 -9.90 16.56 5.32 0.09 -9.81 16 18 C 0.07 0.89 6.72 -82.99 -0.56 0.33 16 19 C -0.10 -0.98 9.61 -39.11 -0.38 -1.36 16 20 C -0.09 -0.62 9.68 -39.01 -0.38 -0.99 16 21 C -0.02 -0.16 5.90 -104.63 -0.62 -0.78 16 22 C -0.21 -1.17 6.05 -105.34 -0.64 -1.80 16 23 C 0.07 0.43 11.45 -17.04 -0.20 0.24 16 24 N -0.29 -2.03 12.66 30.82 0.39 -1.64 16 25 N -0.47 -1.89 7.32 30.65 0.22 -1.66 16 26 H 0.44 0.39 8.96 -182.67 -1.64 -1.24 16 27 C 0.09 0.31 11.40 -16.88 -0.19 0.11 16 28 C 0.09 0.67 10.73 -17.21 -0.18 0.48 16 29 N -0.44 -4.51 6.81 -9.54 -0.06 -4.57 16 30 C 0.11 1.78 6.35 -2.26 -0.01 1.77 16 31 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 32 H 0.36 8.54 5.53 -40.82 -0.23 8.32 16 33 H 0.03 0.58 7.98 -51.93 -0.41 0.17 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.81 7.40 -51.93 -0.38 0.42 16 38 H 0.07 0.78 7.53 -51.93 -0.39 0.38 16 39 H 0.15 1.46 7.63 -52.49 -0.40 1.06 16 40 H 0.14 0.62 7.16 -52.49 -0.38 0.24 16 41 H 0.19 0.65 7.41 -52.49 -0.39 0.26 16 42 H 0.19 0.00 7.30 -52.49 -0.38 -0.38 16 43 H 0.16 0.61 7.03 -52.48 -0.37 0.24 16 44 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 45 H 0.08 1.26 7.93 -51.93 -0.41 0.84 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -37.78 375.52 -9.58 -47.36 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.08 Total: 2.61 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.97 Total: 0.64 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: 0.43 Total: -64.46 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.78 -9.58 -47.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265990610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.989 kcal (2) G-P(sol) polarization free energy of solvation -37.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds