Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.09010 * 110.88514 * 305.69894 * 11 10 9 13 13 C 1.55159 * 111.00723 * 181.82098 * 11 10 9 14 14 C 1.54371 * 102.92027 * 206.45333 * 13 11 10 15 15 N 1.47019 * 107.29093 * 22.13332 * 14 13 11 16 16 C 1.34775 * 125.65104 * 181.12605 * 15 14 13 17 17 O 1.21548 * 120.00353 * 179.97438 * 16 15 14 18 18 C 1.47933 * 119.99960 * 359.96565 * 16 15 14 19 19 C 1.39501 * 119.59798 * 180.02562 * 18 16 15 20 20 C 1.38227 * 119.19132 * 179.97438 * 19 18 16 21 21 C 1.39794 * 118.38842 * 359.97438 * 20 19 18 22 22 C 1.48260 * 120.43871 * 179.97438 * 21 20 19 23 23 C 1.40956 * 126.24877 * 359.69257 * 22 21 20 24 24 N 1.30628 * 108.06868 * 179.81603 * 23 22 21 25 25 N 1.39996 * 108.57115 * 0.44038 * 24 23 22 26 26 H 0.96997 * 125.87496 * 179.75261 * 25 24 23 27 27 C 1.34720 * 108.25779 * 359.71497 * 25 24 23 28 28 C 1.39740 * 119.11980 * 0.02562 * 21 20 19 29 29 N 1.31306 * 120.73314 * 359.71890 * 28 21 20 30 30 C 1.47426 * 108.69966 * 1.09549 * 15 14 13 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 34 34 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 35 35 H 1.09003 * 110.71669 * 324.78042 * 13 11 10 36 36 H 1.08996 * 110.72387 * 88.05793 * 13 11 10 37 37 H 1.09000 * 109.84445 * 262.72938 * 14 13 11 38 38 H 1.09000 * 110.03306 * 141.65067 * 14 13 11 39 39 H 1.07997 * 120.40221 * 359.96948 * 19 18 16 40 40 H 1.08000 * 120.80525 * 180.02562 * 20 19 18 41 41 H 1.07997 * 125.96012 * 359.97438 * 23 22 21 42 42 H 1.08003 * 126.20348 * 180.02562 * 27 25 24 43 43 H 1.07998 * 119.63561 * 180.02562 * 28 21 20 44 44 H 1.09003 * 110.36413 * 217.03041 * 30 15 14 45 45 H 1.09000 * 110.46192 * 94.76002 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8899 -1.5358 -0.8260 13 6 6.4278 -3.5129 -0.0450 14 6 7.7604 -3.1235 0.6301 15 7 7.4994 -1.9396 1.4618 16 6 8.4151 -1.2795 2.1981 17 8 8.0852 -0.3082 2.8501 18 6 9.8217 -1.7373 2.2130 19 6 10.7625 -1.0481 2.9785 20 6 12.0744 -1.4834 2.9867 21 6 12.4072 -2.6054 2.2220 22 6 13.8007 -3.1110 2.1972 23 6 14.8992 -2.5613 2.8885 24 7 15.9519 -3.2859 2.6180 25 7 15.5743 -4.3118 1.7434 26 1 16.1610 -4.9928 1.3790 27 6 14.2555 -4.1912 1.4957 28 6 11.4092 -3.2433 1.4806 29 7 10.1723 -2.8031 1.5019 30 6 6.0702 -1.5936 1.3563 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3620 0.0007 33 1 3.8486 -3.0425 0.8909 34 1 3.8493 -3.0422 -0.8891 35 1 5.9229 -4.2952 0.5218 36 1 6.5941 -3.8277 -1.0751 37 1 8.5046 -2.8858 -0.1300 38 1 8.1166 -3.9435 1.2537 39 1 10.4694 -0.1849 3.5576 40 1 12.8240 -0.9697 3.5703 41 1 14.8743 -1.6941 3.5316 42 1 13.6649 -4.8325 0.8583 43 1 11.6570 -4.1111 0.8873 44 1 5.9409 -0.5113 1.3559 45 1 5.5082 -2.0418 2.1757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265990611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = 101.573129 kcal Electronic energy + Delta-G solvation = -27983.483529 eV Core-core repulsion = 24003.268477 eV Total energy + Delta-G solvation = -3980.215052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90056 -40.75372 -39.33614 -37.57976 -34.84750 -33.90914 -32.37463 -32.23761 -31.93143 -30.71236 -29.47296 -28.74199 -26.11539 -24.56180 -24.32414 -23.09819 -22.14990 -21.63221 -21.03068 -20.34689 -19.87132 -18.80888 -17.81821 -17.29375 -16.79994 -16.07452 -15.76700 -15.52891 -15.39009 -15.23137 -14.95489 -14.53659 -14.39557 -13.92987 -13.79129 -13.74598 -13.54316 -13.37431 -12.90009 -12.68089 -12.63546 -12.41672 -12.16705 -11.77201 -11.64871 -11.49372 -10.90966 -10.83550 -10.66152 -10.59491 -10.45645 -10.35487 -10.22997 -10.05781 -9.96635 -9.64658 -9.54850 -8.86133 -8.62476 -8.42805 -7.19906 -5.73165 -3.08783 0.12261 0.89606 1.29246 2.08943 2.20220 2.81508 2.92162 3.43145 3.46993 3.50984 3.67841 3.80236 3.98024 4.14329 4.37254 4.39161 4.47991 4.63863 4.70566 4.73169 4.79672 4.84187 4.93876 5.03701 5.23614 5.36401 5.40725 5.50781 5.58463 5.64069 5.75601 5.78545 5.83405 5.87647 5.88870 5.95836 6.10205 6.17982 6.21530 6.25422 6.43603 6.53621 6.64524 6.76530 6.94661 7.39255 7.54970 8.02414 8.12084 8.45747 9.24701 9.97344 10.16630 11.45126 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027867 B = 0.001957 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.523202 B =14306.517568 C =15046.568845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.169 3.831 11 C -0.110 4.110 12 H 0.084 0.916 13 C -0.130 4.130 14 C 0.120 3.880 15 N -0.598 5.598 16 C 0.578 3.422 17 O -0.536 6.536 18 C 0.074 3.926 19 C -0.099 4.099 20 C -0.085 4.085 21 C -0.024 4.024 22 C -0.205 4.205 23 C 0.072 3.928 24 N -0.291 5.291 25 N -0.470 5.470 26 H 0.444 0.556 27 C 0.085 3.915 28 C 0.092 3.908 29 N -0.443 5.443 30 C 0.111 3.889 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.189 0.811 42 H 0.185 0.815 43 H 0.159 0.841 44 H 0.079 0.921 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.661 -11.699 2.746 36.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.042 3.958 11 C -0.130 4.130 12 H 0.102 0.898 13 C -0.168 4.168 14 C -0.003 4.003 15 N -0.330 5.330 16 C 0.365 3.635 17 O -0.414 6.414 18 C -0.064 4.064 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.028 4.028 22 C -0.217 4.217 23 C -0.116 4.116 24 N -0.112 5.112 25 N -0.176 5.176 26 H 0.288 0.712 27 C -0.064 4.064 28 C -0.069 4.069 29 N -0.154 5.154 30 C -0.010 4.010 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.205 0.795 42 H 0.202 0.798 43 H 0.176 0.824 44 H 0.097 0.903 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 34.874 -11.793 2.876 36.927 hybrid contribution 0.639 1.358 0.085 1.503 sum 35.513 -10.435 2.961 37.133 Atomic orbital electron populations 1.69705 1.05094 1.25806 1.57611 1.24661 0.95227 0.97195 1.01980 0.86577 0.79188 0.84992 0.77978 1.20902 1.20343 1.21734 1.19046 0.80600 0.94732 1.43039 0.89173 1.42731 1.04103 1.02214 1.91200 1.20572 0.86754 0.89459 0.99037 1.22637 0.96986 0.96637 0.96713 0.89797 1.22764 0.94882 0.97760 1.01437 1.22097 0.96965 0.87215 0.93974 1.48366 1.09432 1.29837 1.45352 1.17474 0.83591 0.82667 0.79722 1.90819 1.80167 1.26877 1.43488 1.21081 0.94642 0.93718 0.96973 1.22039 0.92421 1.00115 0.97397 1.21499 0.96188 0.95387 0.98030 1.19234 0.91866 0.95120 0.96536 1.18776 0.93596 1.01104 1.08266 1.24066 0.89284 0.99307 0.98914 1.77290 1.23350 1.00460 1.10127 1.46269 1.07749 1.25840 1.37705 0.71159 1.22730 0.85802 0.98488 0.99412 1.22762 0.87322 0.99282 0.97532 1.67772 1.19305 1.11179 1.17098 1.22415 0.79003 1.01612 0.97997 0.93085 0.80632 0.95113 0.94937 0.90315 0.89959 0.90820 0.90833 0.83245 0.84089 0.79454 0.79804 0.82418 0.90271 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.74 13.97 55.49 0.78 -28.96 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.76 27.74 -169.99 -4.71 18.05 16 4 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 6 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 N -0.76 -18.08 5.30 -59.91 -0.32 -18.40 16 10 C 0.17 3.17 5.71 -4.05 -0.02 3.15 16 11 C -0.11 -1.65 3.07 -88.48 -0.27 -1.93 16 12 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 13 C -0.13 -1.46 6.42 -24.87 -0.16 -1.62 16 14 C 0.12 1.37 5.40 -3.04 -0.02 1.35 16 15 N -0.60 -8.71 3.33 -171.57 -0.57 -9.28 16 16 C 0.58 8.92 7.83 -12.29 -0.10 8.82 16 17 O -0.54 -9.95 16.56 5.32 0.09 -9.86 16 18 C 0.07 0.89 6.72 -82.99 -0.56 0.33 16 19 C -0.10 -0.99 9.61 -39.11 -0.38 -1.36 16 20 C -0.09 -0.62 9.68 -39.00 -0.38 -1.00 16 21 C -0.02 -0.16 5.90 -104.63 -0.62 -0.78 16 22 C -0.21 -1.17 6.05 -105.34 -0.64 -1.81 16 23 C 0.07 0.43 11.45 -17.03 -0.20 0.24 16 24 N -0.29 -2.03 12.66 30.82 0.39 -1.64 16 25 N -0.47 -1.89 7.32 30.65 0.22 -1.67 16 26 H 0.44 0.40 8.96 -182.68 -1.64 -1.24 16 27 C 0.09 0.31 11.40 -16.88 -0.19 0.11 16 28 C 0.09 0.67 10.73 -17.22 -0.18 0.48 16 29 N -0.44 -4.52 6.80 -9.55 -0.06 -4.58 16 30 C 0.11 1.80 6.23 -2.53 -0.02 1.78 16 31 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 32 H 0.36 8.55 5.49 -40.82 -0.22 8.33 16 33 H 0.03 0.58 8.04 -51.93 -0.42 0.17 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.80 7.41 -51.93 -0.38 0.42 16 38 H 0.07 0.78 7.51 -51.93 -0.39 0.39 16 39 H 0.15 1.47 7.63 -52.49 -0.40 1.07 16 40 H 0.14 0.62 7.16 -52.49 -0.38 0.25 16 41 H 0.19 0.65 7.41 -52.49 -0.39 0.27 16 42 H 0.19 0.01 7.30 -52.48 -0.38 -0.38 16 43 H 0.16 0.61 7.03 -52.49 -0.37 0.24 16 44 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 45 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -37.80 375.38 -9.59 -47.39 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.08 Total: 2.62 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -3.97 Total: 0.68 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.44 Total: -64.54 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.80 -9.59 -47.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265990611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.963 kcal (2) G-P(sol) polarization free energy of solvation -37.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds