Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00428 * 2 1 4 4 H 1.48501 * 109.46964 * 269.99653 * 3 2 1 5 5 H 1.48496 * 109.47161 * 29.99447 * 3 2 1 6 6 H 1.48498 * 109.47197 * 149.99669 * 3 2 1 7 7 C 1.38812 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00015 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00110 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47155 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.91263 * 51.09651 * 11 10 9 13 13 C 1.55157 * 111.00290 * 174.99669 * 11 10 9 14 14 C 1.54326 * 103.09779 * 153.66677 * 13 11 10 15 15 N 1.47018 * 107.27282 * 337.71481 * 14 13 11 16 16 C 1.34781 * 125.65218 * 178.90553 * 15 14 13 17 17 O 1.21624 * 120.00034 * 175.46710 * 16 15 14 18 18 C 1.47152 * 119.99776 * 355.47009 * 16 15 14 19 19 C 1.37072 * 127.21118 * 0.58880 * 18 16 15 20 20 N 1.33308 * 106.37357 * 179.97438 * 19 18 16 21 21 N 1.28493 * 109.49997 * 0.02562 * 20 19 18 22 22 N 1.28723 * 110.66838 * 359.75339 * 21 20 19 23 23 C 1.40088 * 126.05710 * 180.27900 * 22 21 20 24 24 C 1.38870 * 120.06578 * 134.22934 * 23 22 21 25 25 C 1.38114 * 119.92394 * 179.74416 * 24 23 22 26 26 C 1.38273 * 120.07131 * 0.53280 * 25 24 23 27 27 C 1.38285 * 120.14419 * 359.74501 * 26 25 24 28 28 C 1.38112 * 120.06254 * 359.97438 * 27 26 25 29 29 C 1.47432 * 108.70248 * 358.94379 * 15 14 13 30 30 H 0.97000 * 119.99678 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99968 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47629 * 59.99860 * 10 9 7 33 33 H 1.09005 * 109.46901 * 299.99514 * 10 9 7 34 34 H 1.08997 * 110.72236 * 35.21844 * 13 11 10 35 35 H 1.08997 * 110.72227 * 272.11515 * 13 11 10 36 36 H 1.08998 * 109.88389 * 97.13597 * 14 13 11 37 37 H 1.09006 * 109.88002 * 218.30558 * 14 13 11 38 38 H 1.07999 * 126.81305 * 0.02562 * 19 18 16 39 39 H 1.07995 * 120.03658 * 359.97438 * 24 23 22 40 40 H 1.08002 * 119.95913 * 180.27804 * 25 24 23 41 41 H 1.07999 * 119.93069 * 179.72041 * 26 25 24 42 42 H 1.07995 * 119.97158 * 180.02562 * 27 26 25 43 43 H 1.08004 * 120.03538 * 180.02562 * 28 27 26 44 44 H 1.09004 * 110.36324 * 142.96663 * 29 15 14 45 45 H 1.08999 * 110.36315 * 265.17544 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0017 11 6 1.0635 -4.8198 0.0021 12 1 0.3250 -4.7005 -0.7907 13 6 1.7989 -6.1802 -0.1231 14 6 0.8257 -7.1675 0.5551 15 7 -0.0335 -6.3846 1.4552 16 6 -1.0304 -6.8783 2.2161 17 8 -1.6245 -6.1497 2.9877 18 6 -1.4000 -8.2990 2.1133 19 6 -0.8267 -9.2485 1.3079 20 7 -1.4786 -10.3866 1.5460 21 7 -2.3908 -10.1820 2.4275 22 7 -2.3879 -8.9522 2.8074 23 6 -3.2426 -8.3811 3.7591 24 6 -2.7290 -7.5490 4.7452 25 6 -3.5751 -6.9833 5.6788 26 6 -4.9306 -7.2535 5.6391 27 6 -5.4444 -8.0863 4.6619 28 6 -4.6043 -8.6504 3.7220 29 6 0.3754 -4.9698 1.3871 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0005 32 1 2.6838 -3.7143 0.8921 33 1 2.6851 -3.7150 -0.8879 34 1 2.7518 -6.1536 0.4055 35 1 1.9476 -6.4434 -1.1703 36 1 0.2164 -7.6647 -0.1996 37 1 1.3865 -7.9064 1.1277 38 1 -0.0085 -9.1035 0.6179 39 1 -1.6698 -7.3415 4.7797 40 1 -3.1769 -6.3325 6.4432 41 1 -5.5895 -6.8135 6.3730 42 1 -6.5035 -8.2951 4.6333 43 1 -5.0061 -9.3004 2.9587 44 1 -0.4971 -4.3194 1.4493 45 1 1.0776 -4.7389 2.1882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266017923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = 128.727348 kcal Electronic energy + Delta-G solvation = -28972.614830 eV Core-core repulsion = 24993.577273 eV Total energy + Delta-G solvation = -3979.037557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.79329 -40.09116 -39.54959 -37.76248 -35.08025 -34.66974 -32.76658 -31.72375 -31.20440 -30.54764 -30.19856 -28.81119 -26.11707 -24.71101 -24.24121 -23.52373 -22.53840 -22.10663 -21.81304 -20.25252 -20.03321 -18.32734 -17.60122 -17.13930 -16.93999 -16.64423 -16.25312 -15.70540 -15.39228 -15.06614 -14.74965 -14.43321 -14.31112 -13.94346 -13.76534 -13.46506 -13.30632 -13.23888 -12.99531 -12.71933 -12.46410 -12.24182 -12.11661 -11.79210 -11.68485 -11.54823 -11.34252 -10.95804 -10.91138 -10.71648 -10.69648 -10.53442 -10.30097 -10.06683 -9.81855 -9.72809 -9.30062 -9.05174 -8.92271 -8.81066 -6.97690 -5.79859 -3.09563 0.22850 1.00203 1.10170 1.70008 2.01197 2.72808 2.85389 3.31855 3.41571 3.46663 3.48591 3.93069 4.14555 4.41610 4.46980 4.50922 4.52362 4.55390 4.71163 4.73809 4.81929 4.86023 4.98162 5.14131 5.15078 5.25187 5.30101 5.45807 5.54700 5.56357 5.61556 5.77479 5.83300 5.86265 5.90829 5.94251 5.97804 6.06980 6.11350 6.18887 6.25258 6.29071 6.58085 6.61673 6.73582 7.22032 7.66381 7.78152 8.01556 8.38256 9.49718 10.05790 10.39844 11.42738 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.002625 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.723288 B =10665.288902 C =12403.200818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.088 0.912 13 C -0.125 4.125 14 C 0.086 3.914 15 N -0.598 5.598 16 C 0.600 3.400 17 O -0.522 6.522 18 C -0.058 4.058 19 C -0.008 4.008 20 N -0.268 5.268 21 N -0.054 5.054 22 N -0.208 5.208 23 C 0.097 3.903 24 C -0.052 4.052 25 C -0.109 4.109 26 C -0.096 4.096 27 C -0.117 4.117 28 C -0.088 4.088 29 C 0.119 3.881 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.211 0.789 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.087 0.913 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -20.687 7.309 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.106 0.894 13 C -0.164 4.164 14 C -0.037 4.037 15 N -0.332 5.332 16 C 0.386 3.614 17 O -0.398 6.398 18 C -0.190 4.190 19 C -0.167 4.167 20 N -0.131 5.131 21 N -0.033 5.033 22 N 0.002 4.998 23 C 0.008 3.992 24 C -0.072 4.072 25 C -0.128 4.128 26 C -0.114 4.114 27 C -0.136 4.136 28 C -0.108 4.108 29 C -0.002 4.002 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.227 0.773 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.105 0.895 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.215 -21.600 7.925 23.833 hybrid contribution 0.636 1.961 -0.290 2.082 sum -5.579 -19.639 7.636 21.798 Atomic orbital electron populations 1.69656 1.05128 1.25750 1.57443 1.24752 0.95515 0.97750 1.02828 0.86192 0.78657 0.83820 0.77516 1.21700 1.21759 1.20741 1.19200 0.91021 0.84087 1.43073 0.91129 1.42368 1.05884 0.99939 1.89596 1.20583 0.92653 0.84683 0.98364 1.22703 0.98575 0.94868 0.96317 0.89388 1.22680 0.98176 0.94015 1.01484 1.22526 0.92807 0.95380 0.92989 1.48181 1.31854 1.10755 1.42374 1.16192 0.79999 0.84116 0.81091 1.90891 1.52695 1.59219 1.37008 1.22051 0.97870 0.96879 1.02229 1.24560 1.02619 0.88154 1.01393 1.74922 1.04101 1.23858 1.10264 1.78383 1.17511 0.96672 1.10694 1.44733 1.22245 1.06777 1.26078 1.17527 0.88908 1.01243 0.91549 1.21082 1.01475 0.93307 0.91317 1.21062 0.93275 0.99572 0.98906 1.21398 0.95491 0.96579 0.97953 1.21024 0.99950 0.97804 0.94786 1.21000 0.90439 0.99599 0.99734 1.22544 1.00476 0.79138 0.98009 0.93446 0.78222 0.95926 0.95598 0.89928 0.89492 0.90578 0.90584 0.77309 0.84724 0.84566 0.84977 0.84662 0.84875 0.89466 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.68 5.56 -59.91 -0.33 -18.01 16 10 C 0.17 2.98 5.73 -4.04 -0.02 2.95 16 11 C -0.11 -1.46 3.07 -88.21 -0.27 -1.74 16 12 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.13 -1.19 6.41 -24.89 -0.16 -1.35 16 14 C 0.09 0.76 5.03 -3.07 -0.02 0.75 16 15 N -0.60 -7.59 3.33 -171.58 -0.57 -8.16 16 16 C 0.60 8.57 7.62 -12.64 -0.10 8.47 16 17 O -0.52 -8.81 13.24 5.26 0.07 -8.74 16 18 C -0.06 -0.76 6.77 -82.24 -0.56 -1.31 16 19 C -0.01 -0.09 10.55 -17.33 -0.18 -0.28 16 20 N -0.27 -3.57 12.34 30.48 0.38 -3.19 16 21 N -0.05 -0.74 12.96 60.35 0.78 0.04 16 22 N -0.21 -2.80 3.48 -7.21 -0.03 -2.83 16 23 C 0.10 1.22 5.90 -83.62 -0.49 0.73 16 24 C -0.05 -0.62 7.42 -39.39 -0.29 -0.91 16 25 C -0.11 -1.07 10.04 -39.61 -0.40 -1.47 16 26 C -0.10 -0.79 10.04 -39.55 -0.40 -1.18 16 27 C -0.12 -0.98 10.04 -39.61 -0.40 -1.38 16 28 C -0.09 -0.92 9.83 -39.40 -0.39 -1.31 16 29 C 0.12 1.76 6.33 -2.27 -0.01 1.75 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.38 9.84 7.67 -40.82 -0.31 9.52 16 32 H 0.02 0.41 7.98 -51.93 -0.41 0.00 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.56 6.50 -51.93 -0.34 0.23 16 37 H 0.08 0.53 7.40 -51.93 -0.38 0.15 16 38 H 0.21 1.58 4.59 -52.49 -0.24 1.34 16 39 H 0.13 1.73 6.71 -52.49 -0.35 1.37 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 44 H 0.09 1.52 8.08 -51.93 -0.42 1.10 16 45 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -33.70 372.79 -8.11 -41.81 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.80 Total: 7.00 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.93 Total: -3.47 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.95 Total: -59.28 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.70 -8.11 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266017923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.537 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds