Wall clock time and date at job start Sat Apr 11 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86792 * 119.99957 * 2 1 4 4 H 1.48493 * 109.47576 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47511 * 120.00363 * 3 2 1 6 6 H 1.48504 * 109.46808 * 239.99725 * 3 2 1 7 7 C 1.38813 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99931 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99982 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46952 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.88835 * 302.57006 * 11 10 9 13 13 C 1.55161 * 111.00409 * 178.64904 * 11 10 9 14 14 C 1.54320 * 102.94159 * 206.42434 * 13 11 10 15 15 N 1.47012 * 107.27471 * 22.19097 * 14 13 11 16 16 C 1.34779 * 125.64867 * 181.09837 * 15 14 13 17 17 O 1.21631 * 119.99794 * 175.58556 * 16 15 14 18 18 C 1.47144 * 120.00164 * 355.57998 * 16 15 14 19 19 C 1.37074 * 127.21266 * 359.88757 * 18 16 15 20 20 N 1.33313 * 106.37388 * 179.84841 * 19 18 16 21 21 N 1.28488 * 109.49953 * 0.43092 * 20 19 18 22 22 N 1.28720 * 110.67387 * 359.72622 * 21 20 19 23 23 C 1.40083 * 126.06574 * 179.97438 * 22 21 20 24 24 C 1.38864 * 120.07160 * 134.15495 * 23 22 21 25 25 C 1.38114 * 119.92744 * 179.72120 * 24 23 22 26 26 C 1.38285 * 120.06857 * 0.55992 * 25 24 23 27 27 C 1.38279 * 120.13911 * 359.71775 * 26 25 24 28 28 C 1.38110 * 120.07139 * 0.02562 * 27 26 25 29 29 C 1.47423 * 108.70246 * 1.06117 * 15 14 13 30 30 H 0.96993 * 120.00254 * 180.02562 * 1 2 3 31 31 H 0.97005 * 119.99597 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46651 * 299.99980 * 10 9 7 33 33 H 1.08997 * 109.47267 * 59.99761 * 10 9 7 34 34 H 1.09008 * 110.71721 * 324.78670 * 13 11 10 35 35 H 1.09002 * 110.72162 * 88.05855 * 13 11 10 36 36 H 1.09003 * 109.88050 * 262.77137 * 14 13 11 37 37 H 1.08998 * 110.01071 * 141.68719 * 14 13 11 38 38 H 1.08000 * 126.81237 * 359.97438 * 19 18 16 39 39 H 1.07997 * 120.03101 * 0.02562 * 24 23 22 40 40 H 1.08001 * 119.96467 * 180.30031 * 25 24 23 41 41 H 1.08000 * 119.92465 * 179.74481 * 26 25 24 42 42 H 1.08010 * 119.96279 * 180.02562 * 27 26 25 43 43 H 1.08003 * 120.03147 * 179.97438 * 28 27 26 44 44 H 1.09008 * 110.36385 * 217.03140 * 29 15 14 45 45 H 1.08996 * 110.45882 * 94.75872 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6964 1.2125 6 1 3.1040 1.6962 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.0637 -4.8197 0.0031 12 1 0.3942 -4.7582 0.8610 13 6 1.8030 -6.1835 -0.0298 14 6 0.7719 -7.1195 -0.6949 15 7 -0.1556 -6.2737 -1.4602 16 6 -1.2149 -6.7116 -2.1692 17 8 -1.9634 -5.9132 -2.7000 18 6 -1.4659 -8.1554 -2.3012 19 6 -0.7229 -9.1779 -1.7707 20 7 -1.3215 -10.3096 -2.1424 21 7 -2.3531 -10.0343 -2.8572 22 7 -2.4899 -8.7610 -2.9864 23 6 -3.5035 -8.1086 -3.7001 24 6 -4.1636 -7.0243 -3.1371 25 6 -5.1586 -6.3797 -3.8457 26 6 -5.5056 -6.8202 -5.1098 27 6 -4.8540 -7.9033 -5.6707 28 6 -3.8546 -8.5488 -4.9694 29 6 0.2643 -4.8672 -1.3229 30 1 -0.4850 -0.8400 0.0004 31 1 0.3555 -2.3880 0.0023 32 1 2.6846 -3.7153 -0.8872 33 1 2.6847 -3.7138 0.8927 34 1 2.7086 -6.1167 -0.6328 35 1 2.0349 -6.5209 0.9804 36 1 0.2253 -7.6717 0.0695 37 1 1.2773 -7.8154 -1.3645 38 1 0.1692 -9.0850 -1.1691 39 1 -3.8958 -6.6824 -2.1483 40 1 -5.6690 -5.5333 -3.4104 41 1 -6.2868 -6.3170 -5.6601 42 1 -5.1271 -8.2447 -6.6584 43 1 -3.3465 -9.3949 -5.4080 44 1 -0.6072 -4.2151 -1.2640 45 1 0.8994 -4.5758 -2.1594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266017924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:35 Heat of formation + Delta-G solvation = 128.814080 kcal Electronic energy + Delta-G solvation = -29070.160429 eV Core-core repulsion = 25091.126633 eV Total energy + Delta-G solvation = -3979.033796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.82655 -40.16558 -39.57146 -37.84583 -35.22066 -34.80728 -32.92566 -31.76729 -31.22235 -30.52617 -30.21431 -28.73423 -26.05876 -24.59559 -24.25139 -23.51183 -22.65669 -22.16055 -21.91497 -20.31241 -20.07939 -18.37588 -17.64976 -17.20691 -17.06977 -16.70081 -16.33235 -15.85727 -15.39029 -15.02466 -14.78921 -14.54397 -14.30099 -14.02612 -13.82203 -13.67636 -13.32597 -13.30894 -13.19807 -12.78694 -12.52476 -12.28699 -12.09715 -11.98339 -11.70557 -11.58903 -11.15320 -10.97992 -10.94406 -10.75639 -10.64976 -10.49382 -10.34108 -9.99830 -9.85550 -9.32108 -9.20677 -9.07331 -8.93466 -8.86431 -7.06051 -6.13514 -3.14425 0.19920 0.98288 1.07326 1.66537 1.97852 2.68056 2.80454 3.29988 3.49940 3.53390 3.71053 3.87936 4.10896 4.37508 4.42299 4.48921 4.50924 4.53846 4.70215 4.71938 4.76202 4.83951 4.96530 5.08408 5.12257 5.19077 5.26562 5.37752 5.52677 5.58055 5.59884 5.69690 5.74236 5.78472 5.82791 5.88855 5.91925 5.99072 6.09840 6.12194 6.16639 6.19299 6.52737 6.55988 6.64518 7.16150 7.73267 7.76413 7.98164 8.72264 9.17982 10.04418 10.18156 11.34749 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.002691 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.605348 B =10403.874721 C =12265.251501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.744 5.744 10 C 0.170 3.830 11 C -0.107 4.107 12 H 0.086 0.914 13 C -0.124 4.124 14 C 0.086 3.914 15 N -0.599 5.599 16 C 0.601 3.399 17 O -0.521 6.521 18 C -0.059 4.059 19 C -0.008 4.008 20 N -0.268 5.268 21 N -0.053 5.053 22 N -0.207 5.207 23 C 0.096 3.904 24 C -0.052 4.052 25 C -0.109 4.109 26 C -0.096 4.096 27 C -0.117 4.117 28 C -0.088 4.088 29 C 0.119 3.881 30 H 0.255 0.745 31 H 0.367 0.633 32 H 0.024 0.976 33 H 0.027 0.973 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.210 0.790 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.086 0.914 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -20.190 -6.670 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.104 0.896 13 C -0.163 4.163 14 C -0.037 4.037 15 N -0.332 5.332 16 C 0.386 3.614 17 O -0.398 6.398 18 C -0.191 4.191 19 C -0.167 4.167 20 N -0.131 5.131 21 N -0.032 5.032 22 N 0.002 4.998 23 C 0.007 3.993 24 C -0.072 4.072 25 C -0.128 4.128 26 C -0.114 4.114 27 C -0.136 4.136 28 C -0.108 4.108 29 C -0.002 4.002 30 H 0.066 0.934 31 H 0.200 0.800 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.227 0.773 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.104 0.896 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.785 -19.522 -7.341 21.933 hybrid contribution 0.500 -0.745 0.285 0.942 sum -6.285 -20.268 -7.056 22.362 Atomic orbital electron populations 1.70890 1.06039 1.28429 1.53333 1.25792 0.97046 1.01048 1.00283 0.83242 0.74228 0.75596 0.75859 1.21011 1.22241 1.22243 1.20004 0.92019 0.85750 1.48793 0.91715 1.42373 1.04892 1.00925 1.90848 1.20525 0.92552 0.84176 0.98497 1.22632 0.97945 0.95123 0.96988 0.89581 1.22677 0.97670 0.94255 1.01651 1.22514 0.91554 0.94459 0.95146 1.48166 1.26779 1.09930 1.48334 1.16200 0.80888 0.84731 0.79550 1.90897 1.45601 1.55725 1.47531 1.22030 0.94572 0.96478 1.06017 1.24545 1.02189 0.87208 1.02746 1.74925 1.02717 1.25041 1.10440 1.78384 1.15037 0.94041 1.15711 1.44738 1.17754 1.05108 1.32176 1.17530 0.92058 0.97078 0.92639 1.21098 0.92905 0.92238 1.00950 1.21086 0.97016 0.99841 0.94807 1.21408 0.98963 0.95825 0.95201 1.21023 0.96010 0.96300 1.00260 1.20991 0.97989 1.00109 0.91720 1.22424 0.99746 0.79812 0.98179 0.93400 0.79964 0.95827 0.95530 0.89844 0.89422 0.90546 0.90538 0.77347 0.84700 0.84486 0.84942 0.84658 0.84892 0.89594 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.90 13.70 55.49 0.76 -28.14 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 3 Si 1.08 25.63 29.92 -169.99 -5.09 20.55 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.33 -9.26 9.99 -15.06 -0.15 -9.42 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.74 -17.99 5.45 -59.91 -0.33 -18.32 16 10 C 0.17 3.12 5.71 -4.05 -0.02 3.10 16 11 C -0.11 -1.49 3.10 -88.47 -0.27 -1.77 16 12 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.12 -1.19 6.42 -24.90 -0.16 -1.35 16 14 C 0.09 0.77 5.02 -3.07 -0.02 0.75 16 15 N -0.60 -7.62 3.33 -171.90 -0.57 -8.20 16 16 C 0.60 8.60 7.62 -12.64 -0.10 8.50 16 17 O -0.52 -8.85 13.18 5.25 0.07 -8.78 16 18 C -0.06 -0.77 6.77 -82.23 -0.56 -1.32 16 19 C -0.01 -0.09 10.54 -17.33 -0.18 -0.27 16 20 N -0.27 -3.55 12.34 30.49 0.38 -3.17 16 21 N -0.05 -0.73 12.96 60.35 0.78 0.05 16 22 N -0.21 -2.79 3.48 -7.21 -0.03 -2.82 16 23 C 0.10 1.22 5.90 -83.62 -0.49 0.72 16 24 C -0.05 -0.64 7.42 -39.40 -0.29 -0.93 16 25 C -0.11 -1.09 10.04 -39.61 -0.40 -1.49 16 26 C -0.10 -0.79 10.04 -39.55 -0.40 -1.19 16 27 C -0.12 -0.97 10.04 -39.61 -0.40 -1.37 16 28 C -0.09 -0.92 9.83 -39.40 -0.39 -1.31 16 29 C 0.12 1.78 6.10 -2.53 -0.02 1.77 16 30 H 0.25 7.69 6.77 -40.82 -0.28 7.41 16 31 H 0.37 9.12 6.37 -40.82 -0.26 8.86 16 32 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.76 8.04 -51.92 -0.42 0.34 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.56 7.28 -51.93 -0.38 0.18 16 37 H 0.08 0.54 6.64 -51.93 -0.34 0.19 16 38 H 0.21 1.57 4.59 -52.49 -0.24 1.33 16 39 H 0.14 1.79 6.71 -52.49 -0.35 1.44 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 44 H 0.09 1.49 8.00 -51.92 -0.42 1.07 16 45 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -34.80 370.70 -8.06 -42.85 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.69 Total: 7.31 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.94 Total: -6.92 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.99 Total: -60.59 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.07 Total: -8.78 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.09 Total: 20.55 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.80 -8.06 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266017924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.667 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds