Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00362 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72185 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72308 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72118 * 3 2 1 7 7 C 1.38803 * 119.99820 * 179.72030 * 2 1 3 8 8 H 1.07999 * 120.00074 * 180.27552 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.27912 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47406 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00261 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00222 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99957 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.50564 * 35.07233 * 14 13 11 16 16 C 1.53118 * 109.49993 * 274.99601 * 14 13 11 17 17 C 1.53119 * 109.15841 * 182.40666 * 16 14 13 18 18 C 1.53038 * 109.28082 * 57.65504 * 17 16 14 19 19 N 1.46849 * 109.52243 * 300.82303 * 18 17 16 20 20 C 1.46902 * 110.99983 * 185.83707 * 19 18 17 21 21 C 1.50699 * 109.46811 * 66.04321 * 20 19 18 22 22 O 1.21278 * 120.00393 * 0.02562 * 21 20 19 23 23 N 1.34780 * 119.99462 * 179.97438 * 21 20 19 24 24 C 1.47065 * 136.06270 * 359.63508 * 23 21 20 25 25 C 1.53243 * 88.08501 * 207.20344 * 24 23 21 26 26 C 1.47077 * 136.05521 * 180.02562 * 23 21 20 27 27 C 1.46846 * 111.20053 * 61.73801 * 19 18 17 28 28 H 0.97001 * 120.00425 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 30 30 H 1.08996 * 109.47201 * 59.99195 * 10 9 7 31 31 H 0.96999 * 119.99516 * 359.97438 * 13 11 10 32 32 H 1.09009 * 109.52496 * 302.31034 * 16 14 13 33 33 H 1.08994 * 109.52645 * 62.50443 * 16 14 13 34 34 H 1.09002 * 109.50445 * 177.59514 * 17 16 14 35 35 H 1.08998 * 109.50217 * 297.67335 * 17 16 14 36 36 H 1.09004 * 109.46170 * 60.83736 * 18 17 16 37 37 H 1.08997 * 109.46436 * 180.80393 * 18 17 16 38 38 H 1.09002 * 109.47247 * 186.04526 * 20 19 18 39 39 H 1.09000 * 109.46696 * 306.04516 * 20 19 18 40 40 H 1.09011 * 113.46244 * 321.93118 * 24 23 21 41 41 H 1.08995 * 113.47040 * 92.36687 * 24 23 21 42 42 H 1.09003 * 114.32041 * 220.47049 * 25 24 23 43 43 H 1.08998 * 114.19638 * 87.72772 * 25 24 23 44 44 H 1.08999 * 113.46565 * 267.62425 * 26 23 21 45 45 H 1.09002 * 113.46323 * 38.00377 * 26 23 21 46 46 H 1.08994 * 109.46533 * 178.24239 * 27 19 18 47 47 H 1.09004 * 109.46340 * 58.27274 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0068 5 1 1.8967 2.3935 -1.2160 6 1 1.8865 2.3993 1.2091 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0104 9 16 1.1292 -2.7280 0.0059 10 6 2.5157 -3.8915 0.0138 11 6 1.9872 -5.3027 0.0143 12 8 0.7909 -5.5024 0.0102 13 7 2.8439 -6.3432 0.0203 14 6 2.3301 -7.7152 0.0213 15 1 1.4175 -7.7624 -0.5728 16 6 2.0271 -8.1464 1.4589 17 6 1.5478 -9.6007 1.4569 18 6 2.6201 -10.4852 0.8167 19 7 2.8735 -10.0326 -0.5572 20 6 3.7961 -10.9424 -1.2494 21 6 3.1361 -12.2850 -1.4302 22 8 2.0081 -12.4661 -1.0229 23 7 3.7990 -13.2844 -2.0454 24 6 5.1232 -13.4546 -2.6621 25 6 4.5094 -14.5339 -3.5602 26 6 3.5138 -14.6825 -2.4016 27 6 3.3797 -8.6543 -0.5774 28 1 -0.4851 -0.8400 -0.0004 29 1 3.1277 -3.7334 -0.8743 30 1 3.1209 -3.7294 0.9056 31 1 3.8007 -6.1835 0.0239 32 1 2.9306 -8.0614 2.0629 33 1 1.2484 -7.5069 1.8746 34 1 1.3712 -9.9271 2.4818 35 1 0.6227 -9.6781 0.8858 36 1 3.5405 -10.4178 1.3968 37 1 2.2760 -11.5193 0.8007 38 1 4.0508 -10.5284 -2.2251 39 1 4.7031 -11.0602 -0.6566 40 1 5.4623 -12.5762 -3.2114 41 1 5.8763 -13.8388 -1.9741 42 1 5.1470 -15.4042 -3.7161 43 1 4.0693 -14.1516 -4.4811 44 1 3.8335 -15.3975 -1.6435 45 1 2.4870 -14.8462 -2.7288 46 1 3.5873 -8.3586 -1.6057 47 1 4.2965 -8.5954 0.0094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266205428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = -28.919791 kcal Electronic energy + Delta-G solvation = -26833.305285 eV Core-core repulsion = 22950.582836 eV Total energy + Delta-G solvation = -3882.722449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86363 -39.91980 -38.78444 -37.64416 -34.71265 -33.02498 -32.51571 -30.76073 -30.54190 -28.46043 -27.58038 -26.41380 -24.84047 -23.70414 -23.06124 -22.28017 -20.35715 -20.06660 -19.39287 -18.32663 -17.56500 -16.91094 -16.83077 -16.44593 -15.89980 -15.57450 -15.48799 -15.04999 -14.52564 -14.47230 -14.07869 -13.89948 -13.82166 -13.71524 -13.29324 -13.24381 -13.18098 -13.12546 -12.68446 -12.37252 -12.29950 -12.14681 -12.01651 -11.82032 -11.50604 -11.35145 -11.03873 -10.90316 -10.88465 -10.75071 -10.20374 -10.01463 -9.57393 -9.44849 -9.20873 -9.01309 -8.92278 -8.67548 -8.20162 -6.65373 -6.61177 -3.98800 2.17708 2.28943 2.88199 3.02499 3.32436 3.40160 3.41039 3.54192 3.72493 3.81120 3.98850 4.25553 4.35122 4.49243 4.55551 4.65423 4.75966 4.77486 4.80298 4.83665 4.91219 5.05468 5.05663 5.07513 5.07875 5.14734 5.23185 5.23513 5.31851 5.40450 5.46736 5.53498 5.55674 5.75243 5.76478 5.80789 5.98754 6.02571 6.18262 6.25648 6.49622 6.62199 6.77411 7.24232 7.65420 7.80540 7.94058 8.51382 8.55537 9.28312 10.82911 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028006 B = 0.001737 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.542447 B =16116.383576 C =16609.146153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.035 3.965 3 Si 1.090 2.910 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.116 6.116 10 C -0.131 4.131 11 C 0.533 3.467 12 O -0.514 6.514 13 N -0.734 5.734 14 C 0.152 3.848 15 H 0.098 0.902 16 C -0.133 4.133 17 C -0.111 4.111 18 C 0.051 3.949 19 N -0.518 5.518 20 C 0.046 3.954 21 C 0.542 3.458 22 O -0.514 6.514 23 N -0.655 5.655 24 C 0.098 3.902 25 C -0.156 4.156 26 C 0.104 3.896 27 C 0.054 3.946 28 H 0.279 0.721 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.396 0.604 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.028 0.972 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.488 -31.076 -4.041 35.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.176 4.176 3 Si 0.917 3.083 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.111 5.889 10 C -0.282 4.282 11 C 0.319 3.681 12 O -0.388 6.388 13 N -0.388 5.388 14 C 0.046 3.954 15 H 0.116 0.884 16 C -0.171 4.171 17 C -0.149 4.149 18 C -0.077 4.077 19 N -0.243 5.243 20 C -0.085 4.085 21 C 0.332 3.668 22 O -0.388 6.388 23 N -0.394 5.394 24 C -0.025 4.025 25 C -0.194 4.194 26 C -0.019 4.019 27 C -0.075 4.075 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.230 0.770 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.062 -29.668 -3.946 32.656 hybrid contribution 3.202 -1.270 0.466 3.476 sum 16.264 -30.938 -3.480 35.125 Atomic orbital electron populations 1.70730 1.06714 1.31069 1.43422 1.26055 0.96337 1.02139 0.93039 0.83247 0.74058 0.73694 0.77338 1.21435 1.20887 1.20889 1.23768 0.96071 0.92206 1.63547 0.91556 1.84846 1.08095 0.98785 1.97212 1.23316 1.05101 0.94588 1.05176 1.20257 0.86603 0.86171 0.75119 1.90712 1.15299 1.85481 1.47277 1.45972 1.09783 1.05273 1.77776 1.20794 0.97808 0.80040 0.96714 0.88364 1.22018 1.01797 0.96734 0.96601 1.21498 0.99169 0.93736 1.00530 1.22325 0.97743 1.01043 0.86557 1.61431 1.44615 1.00628 1.17615 1.21827 0.94179 0.91163 1.01303 1.20150 0.85883 0.84556 0.76249 1.90720 1.18192 1.82163 1.47769 1.49728 1.17811 1.12262 1.59583 1.22965 0.86467 0.98965 0.94132 1.23343 0.98811 0.99631 0.97610 1.22916 1.00937 0.82843 0.95187 1.22285 0.95890 0.87781 1.01501 0.90891 0.89002 0.89017 0.77032 0.92237 0.90697 0.91154 0.90474 0.95351 0.88945 0.87752 0.91941 0.90261 0.89614 0.89072 0.88614 0.89857 0.90331 0.89922 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.79 13.67 55.49 0.76 -27.04 16 2 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 3 Si 1.09 25.22 29.92 -169.99 -5.09 20.13 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.61 -17.67 9.50 30.94 0.29 -17.37 16 8 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 9 S -0.12 -3.15 19.60 -107.50 -2.11 -5.26 16 10 C -0.13 -2.66 6.16 36.00 0.22 -2.43 16 11 C 0.53 10.01 7.81 -10.99 -0.09 9.92 16 12 O -0.51 -11.82 15.53 5.56 0.09 -11.73 16 13 N -0.73 -9.88 5.08 -53.73 -0.27 -10.15 16 14 C 0.15 1.93 2.62 -67.85 -0.18 1.76 16 15 H 0.10 1.56 7.58 -51.93 -0.39 1.16 16 16 C -0.13 -1.64 5.58 -26.61 -0.15 -1.79 16 17 C -0.11 -1.26 6.09 -26.65 -0.16 -1.42 16 18 C 0.05 0.53 5.11 -3.83 -0.02 0.51 16 19 N -0.52 -5.42 4.39 -236.11 -1.04 -6.46 16 20 C 0.05 0.37 5.28 -4.98 -0.03 0.34 16 21 C 0.54 5.45 7.75 -10.98 -0.09 5.37 16 22 O -0.51 -7.36 15.12 5.56 0.08 -7.27 16 23 N -0.66 -4.55 3.69 -185.42 -0.68 -5.24 16 24 C 0.10 0.29 8.40 -8.64 -0.07 0.22 16 25 C -0.16 -0.36 8.48 -26.36 -0.22 -0.59 16 26 C 0.10 0.51 8.61 -8.51 -0.07 0.44 16 27 C 0.05 0.52 4.93 -3.83 -0.02 0.50 16 28 H 0.28 8.95 7.13 -40.82 -0.29 8.66 16 29 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 30 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 31 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 32 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 1.10 5.80 -51.93 -0.30 0.80 16 38 H 0.10 0.66 7.98 -51.93 -0.41 0.25 16 39 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 40 H 0.08 0.16 8.14 -51.92 -0.42 -0.26 16 41 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 43 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.73 8.01 -51.93 -0.42 0.32 16 47 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -38.50 395.14 -10.69 -49.19 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.71 Total: 1.49 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.67 Total: -3.62 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -1.24 Total: -48.88 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.17 Total: -19.00 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.09 Total: 20.13 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.11 Total: -5.26 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.50 -10.69 -49.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266205428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.270 kcal (2) G-P(sol) polarization free energy of solvation -38.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds