Wall clock time and date at job start Sat Apr 11 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46911 * 299.99827 * 3 2 1 6 6 H 1.48506 * 109.47215 * 59.99585 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.50234 * 324.92556 * 14 13 11 16 16 C 1.53123 * 109.49980 * 85.00236 * 14 13 11 17 17 C 1.53124 * 109.15870 * 177.59910 * 16 14 13 18 18 C 1.53036 * 109.27666 * 302.34357 * 17 16 14 19 19 N 1.46855 * 109.52315 * 59.18145 * 18 17 16 20 20 C 1.46899 * 110.99868 * 174.15606 * 19 18 17 21 21 C 1.50702 * 109.47035 * 66.04886 * 20 19 18 22 22 O 1.21285 * 119.99753 * 359.97438 * 21 20 19 23 23 N 1.34769 * 120.00165 * 179.97438 * 21 20 19 24 24 C 1.47069 * 136.05769 * 359.62799 * 23 21 20 25 25 C 1.53235 * 88.08331 * 207.20768 * 24 23 21 26 26 C 1.47068 * 136.06016 * 179.97438 * 23 21 20 27 27 C 1.46838 * 111.19692 * 298.25626 * 19 18 17 28 28 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 31 31 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.52368 * 297.50073 * 16 14 13 33 33 H 1.08991 * 109.52101 * 57.69373 * 16 14 13 34 34 H 1.09001 * 109.50131 * 62.28757 * 17 16 14 35 35 H 1.08994 * 109.50034 * 182.40757 * 17 16 14 36 36 H 1.09005 * 109.46096 * 179.19094 * 18 17 16 37 37 H 1.08999 * 109.46883 * 299.17655 * 18 17 16 38 38 H 1.09000 * 109.46948 * 186.04389 * 20 19 18 39 39 H 1.08994 * 109.47333 * 306.04630 * 20 19 18 40 40 H 1.09005 * 113.46438 * 321.93984 * 24 23 21 41 41 H 1.09001 * 113.46991 * 92.37159 * 24 23 21 42 42 H 1.09006 * 114.32498 * 220.47180 * 25 24 23 43 43 H 1.08996 * 114.02113 * 87.72068 * 25 24 23 44 44 H 1.08995 * 113.47183 * 267.62330 * 26 23 21 45 45 H 1.09003 * 113.46298 * 38.06402 * 26 23 21 46 46 H 1.09000 * 109.46737 * 301.72264 * 27 19 18 47 47 H 1.08996 * 109.46232 * 181.75455 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7914 -5.5023 0.0056 13 7 2.8444 -6.3430 0.0022 14 6 2.3308 -7.7150 0.0024 15 1 1.4155 -7.7609 0.5926 16 6 2.0343 -8.1499 -1.4355 17 6 1.5551 -9.6043 -1.4319 18 6 2.6246 -10.4870 -0.7847 19 7 2.8718 -10.0309 0.5892 20 6 3.7912 -10.9389 1.2879 21 6 5.1499 -10.8751 0.6391 22 8 5.3340 -10.1454 -0.3121 23 7 6.1603 -11.6288 1.1157 24 6 6.3353 -12.5956 2.2101 25 6 7.8180 -12.2101 2.2447 26 6 7.5748 -11.8420 0.7742 27 6 3.3778 -8.6526 0.6081 28 1 -0.4850 0.8400 -0.0004 29 1 3.1240 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8875 31 1 3.8012 -6.1834 0.0032 32 1 1.2574 -7.5115 -1.8563 33 1 2.9404 -8.0664 -2.0355 34 1 0.6278 -9.6805 -0.8642 35 1 1.3832 -9.9332 -2.4567 36 1 2.2804 -11.5211 -0.7675 37 1 3.5476 -10.4209 -1.3606 38 1 3.8732 -10.6396 2.3328 39 1 3.4087 -11.9579 1.2308 40 1 5.7968 -12.3252 3.1184 41 1 6.1622 -13.6287 1.9086 42 1 8.4972 -13.0505 2.3883 43 1 8.0403 -11.3588 2.8880 44 1 7.7350 -12.6724 0.0867 45 1 8.0883 -10.9320 0.4639 46 1 4.2972 -8.5951 0.0255 47 1 3.5806 -8.3542 1.6366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266205430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:42 Heat of formation + Delta-G solvation = -21.879608 kcal Electronic energy + Delta-G solvation = -27259.468211 eV Core-core repulsion = 23377.051047 eV Total energy + Delta-G solvation = -3882.417164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07327 -39.82285 -38.82952 -37.35191 -34.56278 -32.88860 -32.38780 -30.82711 -30.36872 -28.24223 -27.48862 -26.41416 -25.44158 -23.65805 -22.92192 -22.28583 -20.17078 -20.12173 -19.38293 -17.85439 -17.55357 -16.85514 -16.73609 -16.29225 -16.03031 -15.37974 -15.01723 -14.89927 -14.76910 -14.71135 -14.34389 -14.02957 -13.57449 -13.53860 -13.22348 -13.15649 -13.04056 -12.85869 -12.62631 -12.49331 -12.16404 -12.00034 -11.87266 -11.36998 -11.26980 -11.04277 -10.97624 -10.92483 -10.78383 -10.73003 -10.70179 -10.52339 -9.75809 -9.28043 -9.23766 -9.03734 -8.74959 -8.41159 -8.17442 -6.44630 -6.17731 -3.87494 2.12194 2.32345 3.03807 3.19826 3.24363 3.29466 3.34163 3.56159 3.71283 3.92065 4.00833 4.24384 4.34813 4.52591 4.65763 4.70467 4.78912 4.79917 4.90441 4.97698 5.01697 5.05931 5.13535 5.15059 5.17335 5.23612 5.24924 5.41157 5.51425 5.53116 5.59967 5.69962 5.74311 5.80850 5.90590 5.97447 6.06174 6.21252 6.28163 6.37203 6.58773 6.68643 6.88434 7.21862 7.64014 7.68798 7.84426 8.39663 8.73192 9.27648 10.89753 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.002015 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.901567 B =13894.550946 C =14944.952776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.517 6.517 13 N -0.734 5.734 14 C 0.154 3.846 15 H 0.093 0.907 16 C -0.132 4.132 17 C -0.111 4.111 18 C 0.041 3.959 19 N -0.507 5.507 20 C 0.044 3.956 21 C 0.508 3.492 22 O -0.531 6.531 23 N -0.650 5.650 24 C 0.098 3.902 25 C -0.156 4.156 26 C 0.099 3.901 27 C 0.029 3.971 28 H 0.267 0.733 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.396 0.604 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.595 -30.964 4.315 34.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.391 6.391 13 N -0.388 5.388 14 C 0.049 3.951 15 H 0.111 0.889 16 C -0.170 4.170 17 C -0.149 4.149 18 C -0.086 4.086 19 N -0.230 5.230 20 C -0.088 4.088 21 C 0.297 3.703 22 O -0.408 6.408 23 N -0.388 5.388 24 C -0.025 4.025 25 C -0.194 4.194 26 C -0.024 4.024 27 C -0.098 4.098 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.833 -30.637 3.959 33.451 hybrid contribution 3.279 1.236 -0.406 3.527 sum 16.112 -29.400 3.554 33.714 Atomic orbital electron populations 1.70028 1.05929 1.27284 1.47064 1.24996 0.95029 0.99016 0.94623 0.86120 0.79590 0.81929 0.77864 1.19644 1.20589 1.20588 1.22919 0.94953 0.91709 1.58652 0.90914 1.85383 1.05012 0.96261 1.96692 1.23538 1.06485 0.95501 1.04867 1.20264 0.86549 0.86170 0.75008 1.90692 1.15304 1.85541 1.47533 1.46000 1.09834 1.05305 1.77617 1.20751 0.97598 0.80361 0.96403 0.88919 1.21978 1.01809 0.96273 0.96976 1.21499 0.98629 0.94414 1.00377 1.22339 0.99458 0.98508 0.88310 1.62288 1.41599 1.01718 1.17353 1.22292 0.86825 0.99888 0.99801 1.22080 0.85810 0.78981 0.83429 1.90654 1.82719 1.39458 1.28014 1.50010 1.11617 1.42626 1.34551 1.22978 0.95657 0.93498 0.90397 1.23352 0.96373 1.02869 0.96824 1.22947 0.81070 1.01537 0.96870 1.22626 0.98240 0.87311 1.01669 0.92276 0.89292 0.89305 0.77048 0.90880 0.92025 0.90919 0.91245 0.91218 0.92266 0.87582 0.87626 0.90087 0.89498 0.89057 0.88649 0.89841 0.90439 0.90317 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.62 13.22 55.49 0.73 -25.89 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -15.58 9.50 30.94 0.29 -15.28 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.25 6.16 36.01 0.22 -3.02 16 11 C 0.53 10.60 7.81 -10.98 -0.09 10.51 16 12 O -0.52 -12.24 15.52 5.56 0.09 -12.16 16 13 N -0.73 -11.12 5.08 -53.73 -0.27 -11.39 16 14 C 0.15 2.17 2.62 -67.85 -0.18 1.99 16 15 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 16 C -0.13 -1.78 5.58 -26.60 -0.15 -1.93 16 17 C -0.11 -1.23 6.09 -26.65 -0.16 -1.40 16 18 C 0.04 0.43 5.10 -3.83 -0.02 0.41 16 19 N -0.51 -5.22 4.86 -236.12 -1.15 -6.36 16 20 C 0.04 0.33 5.69 -4.98 -0.03 0.30 16 21 C 0.51 4.75 7.49 -10.99 -0.08 4.66 16 22 O -0.53 -6.96 12.40 5.55 0.07 -6.89 16 23 N -0.65 -4.36 3.69 -185.43 -0.68 -5.04 16 24 C 0.10 0.28 8.40 -8.65 -0.07 0.20 16 25 C -0.16 -0.38 8.48 -26.34 -0.22 -0.60 16 26 C 0.10 0.50 8.61 -8.50 -0.07 0.43 16 27 C 0.03 0.35 4.44 -3.84 -0.02 0.33 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 30 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 31 H 0.40 5.00 8.60 -40.82 -0.35 4.65 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 37 H 0.06 0.72 6.00 -51.93 -0.31 0.40 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.11 0.58 8.06 -51.93 -0.42 0.16 16 40 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 42 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 1.03 5.36 -51.93 -0.28 0.75 16 47 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -37.47 391.43 -10.86 -48.32 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.63 Total: 1.98 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -0.67 Total: -1.38 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -1.37 Total: -48.69 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.16 Total: -19.05 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.47 -10.86 -48.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266205430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.444 kcal (2) G-P(sol) polarization free energy of solvation -37.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds