Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99752 * 2 1 4 4 H 1.48507 * 109.46877 * 269.99437 * 3 2 1 5 5 H 1.48496 * 109.47486 * 29.99247 * 3 2 1 6 6 H 1.48499 * 109.47169 * 149.99738 * 3 2 1 7 7 C 1.38810 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00132 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99992 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47000 * 35.00168 * 10 9 7 12 12 C 1.53003 * 109.46846 * 154.99997 * 10 9 7 13 13 N 1.46497 * 109.47373 * 304.99955 * 12 10 9 14 14 C 1.34771 * 120.00211 * 180.02562 * 13 12 10 15 15 O 1.21575 * 120.00374 * 359.97438 * 14 13 12 16 16 C 1.47678 * 120.00172 * 180.02562 * 14 13 12 17 17 C 1.39698 * 120.08108 * 180.02562 * 16 14 13 18 18 C 1.37740 * 119.91658 * 180.02562 * 17 16 14 19 19 C 1.39024 * 120.07944 * 0.02562 * 18 17 16 20 20 N 1.39932 * 119.91491 * 179.97438 * 19 18 17 21 21 C 1.36353 * 127.11530 * 359.67952 * 20 19 18 22 22 N 1.30502 * 107.19764 * 180.26051 * 21 20 19 23 23 N 1.28548 * 109.91564 * 0.02562 * 22 21 20 24 24 C 1.30497 * 109.92032 * 359.97438 * 23 22 21 25 25 C 1.39015 * 120.16417 * 0.24589 * 19 18 17 26 26 C 1.37737 * 120.08189 * 359.45458 * 25 19 18 27 27 C 1.52994 * 109.47306 * 274.99934 * 10 9 7 28 28 C 1.52999 * 117.49817 * 128.74966 * 27 10 9 29 29 C 1.53005 * 117.49866 * 60.08492 * 27 10 9 30 30 H 0.96993 * 120.00158 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00279 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47136 * 185.00238 * 12 10 9 33 33 H 1.08996 * 109.47148 * 65.00360 * 12 10 9 34 34 H 0.97004 * 119.99757 * 0.02562 * 13 12 10 35 35 H 1.07997 * 120.04179 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.95630 * 179.97438 * 18 17 16 37 37 H 1.08000 * 126.40257 * 0.24637 * 21 20 19 38 38 H 1.08005 * 126.40269 * 180.02562 * 24 23 22 39 39 H 1.08000 * 119.96109 * 179.72969 * 25 19 18 40 40 H 1.08000 * 120.04595 * 180.27423 * 26 25 19 41 41 H 1.09004 * 115.55056 * 274.41544 * 27 10 9 42 42 H 1.08992 * 117.50107 * 359.97438 * 28 27 10 43 43 H 1.09002 * 117.49960 * 145.02209 * 28 27 10 44 44 H 1.08992 * 117.49707 * 214.97540 * 29 27 10 45 45 H 1.09000 * 117.49358 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4476 2.6528 0.6998 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9689 -3.5504 0.5900 12 6 1.1811 -4.7521 0.6102 13 7 0.7344 -4.3355 1.9418 14 6 -0.0545 -5.1477 2.6727 15 8 -0.3960 -6.2259 2.2268 16 6 -0.5052 -4.7274 4.0147 17 6 -1.3226 -5.5682 4.7740 18 6 -1.7414 -5.1727 6.0251 19 6 -1.3521 -3.9381 6.5322 20 7 -1.7800 -3.5395 7.8035 21 6 -2.5792 -4.2382 8.6592 22 7 -2.7351 -3.5047 9.7273 23 7 -2.0911 -2.3998 9.5976 24 6 -1.4892 -2.3693 8.4401 25 6 -0.5434 -3.0964 5.7773 26 6 -0.1156 -3.4878 4.5279 27 6 2.4222 -4.0356 -1.4364 28 6 3.8824 -4.3891 -1.7256 29 6 3.3030 -3.0620 -2.2222 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 1.7560 -5.6745 0.6920 33 1 0.3136 -4.9201 -0.0280 34 1 1.0066 -3.4750 2.2974 35 1 -1.6264 -6.5268 4.3801 36 1 -2.3737 -5.8220 6.6125 37 1 -3.0040 -5.2159 8.4855 38 1 -0.8753 -1.5671 8.0578 39 1 -0.2465 -2.1362 6.1726 40 1 0.5163 -2.8353 3.9437 41 1 1.6543 -4.5775 -1.9886 42 1 4.5839 -4.3515 -0.8922 43 1 4.0752 -5.1633 -2.4682 44 1 3.1149 -2.9639 -3.2913 45 1 3.6228 -2.1515 -1.7155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266433626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = 117.825355 kcal Electronic energy + Delta-G solvation = -28289.041490 eV Core-core repulsion = 24309.531188 eV Total energy + Delta-G solvation = -3979.510303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.57448 -40.35184 -38.82241 -37.60006 -35.19565 -34.84835 -33.55318 -31.92374 -31.25309 -30.73247 -30.26777 -28.06695 -25.20845 -24.11333 -23.71706 -22.81937 -22.04667 -21.77133 -21.40396 -20.44460 -19.69949 -19.15420 -18.01152 -17.15239 -16.51961 -16.19943 -16.09898 -15.38829 -15.34830 -15.05265 -14.94716 -14.53568 -14.50672 -14.16048 -13.94195 -13.82079 -13.44616 -13.27096 -13.21081 -12.88356 -12.25145 -11.88138 -11.57898 -11.48595 -11.46019 -11.25491 -10.96226 -10.95430 -10.85309 -10.82101 -10.22134 -10.05209 -9.97627 -9.85665 -9.61019 -9.53960 -9.40217 -9.09286 -9.02137 -8.73458 -7.16978 -5.92798 -3.23056 0.09946 0.87215 1.58044 1.96074 2.50798 2.75627 3.27516 3.31669 3.37297 3.39619 3.59359 3.98371 4.10753 4.21470 4.31701 4.38045 4.49750 4.58508 4.72518 4.83710 4.86509 5.09233 5.17452 5.24479 5.35760 5.41811 5.46973 5.50973 5.60867 5.63920 5.71251 5.79481 5.86035 5.91040 5.96794 6.00076 6.08338 6.17095 6.27474 6.44881 6.49140 6.58634 6.66472 6.72992 6.88241 7.54557 7.70194 8.23602 8.27847 8.31367 9.36256 9.89333 10.25594 11.28618 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.002742 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.060393 B =10210.395863 C =12309.965842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.007 4.007 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.056 0.944 12 C 0.118 3.882 13 N -0.704 5.704 14 C 0.553 3.447 15 O -0.547 6.547 16 C -0.126 4.126 17 C -0.035 4.035 18 C -0.138 4.138 19 C 0.145 3.855 20 N -0.429 5.429 21 C 0.160 3.840 22 N -0.292 5.292 23 N -0.292 5.292 24 C 0.164 3.836 25 C -0.131 4.131 26 C -0.051 4.051 27 C -0.160 4.160 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.223 0.777 38 H 0.225 0.775 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 -10.395 9.476 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.006 4.006 13 N -0.355 5.355 14 C 0.339 3.661 15 O -0.426 6.426 16 C -0.129 4.129 17 C -0.054 4.054 18 C -0.157 4.157 19 C 0.051 3.949 20 N -0.116 5.116 21 C -0.126 4.126 22 N -0.129 5.129 23 N -0.129 5.129 24 C -0.123 4.123 25 C -0.151 4.151 26 C -0.071 4.071 27 C -0.181 4.181 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.248 0.752 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.239 0.761 38 H 0.241 0.759 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.250 -10.513 10.633 14.955 hybrid contribution 0.674 1.096 -1.464 1.949 sum 0.424 -9.418 9.169 13.151 Atomic orbital electron populations 1.69654 1.05043 1.25802 1.57018 1.24717 0.95422 0.97562 1.02699 0.86286 0.78689 0.84074 0.77670 1.21688 1.21803 1.20753 1.19145 0.90831 0.83780 1.43332 0.91113 1.42470 1.05813 0.99401 1.88149 1.20067 0.94311 0.86081 0.91376 0.92612 1.21664 0.98813 0.97729 0.82413 1.45911 1.49987 1.21609 1.18000 1.18067 0.78935 0.84473 0.84600 1.90762 1.57232 1.22458 1.72190 1.20206 1.01248 0.95781 0.95714 1.21146 0.93009 0.99544 0.91719 1.20781 1.03003 0.94802 0.97162 1.17917 0.98338 0.95520 0.83088 1.44310 1.37330 1.16047 1.13929 1.26806 0.96813 1.01437 0.87581 1.74250 1.18429 1.00027 1.20227 1.74257 1.09633 1.13989 1.15037 1.26881 1.03273 0.90715 0.91382 1.20806 0.99222 1.00025 0.95053 1.21393 0.96674 0.94796 0.94190 1.23019 0.92232 1.03170 0.99729 1.22969 0.97203 0.99842 1.03380 1.22788 1.03327 0.94044 0.99146 0.93406 0.78048 0.91317 0.91471 0.75238 0.83340 0.84414 0.76071 0.75913 0.84201 0.83499 0.89091 0.89523 0.90043 0.90185 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.30 13.06 55.49 0.72 -24.57 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.90 20.43 29.55 -169.99 -5.02 15.41 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.24 -5.69 8.63 -15.06 -0.13 -5.82 16 8 H 0.07 1.65 6.91 -52.49 -0.36 1.29 16 9 N -0.72 -15.07 4.54 -53.43 -0.24 -15.31 16 10 C 0.19 3.24 2.70 -67.93 -0.18 3.05 16 11 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 12 C 0.12 1.80 5.22 -4.04 -0.02 1.78 16 13 N -0.70 -10.26 5.34 -61.30 -0.33 -10.58 16 14 C 0.55 8.10 7.77 -12.41 -0.10 8.00 16 15 O -0.55 -9.49 16.34 5.30 0.09 -9.40 16 16 C -0.13 -1.47 5.88 -104.95 -0.62 -2.09 16 17 C -0.03 -0.34 9.58 -39.22 -0.38 -0.72 16 18 C -0.14 -1.10 9.46 -39.47 -0.37 -1.48 16 19 C 0.14 1.27 6.65 -83.58 -0.56 0.72 16 20 N -0.43 -3.91 2.99 -63.17 -0.19 -4.10 16 21 C 0.16 1.45 12.06 -89.16 -1.08 0.37 16 22 N -0.29 -3.65 12.20 29.85 0.36 -3.29 16 23 N -0.29 -3.72 12.19 29.85 0.36 -3.36 16 24 C 0.16 1.57 12.06 -89.17 -1.08 0.49 16 25 C -0.13 -1.16 9.46 -39.48 -0.37 -1.53 16 26 C -0.05 -0.53 9.53 -39.22 -0.37 -0.90 16 27 C -0.16 -2.57 5.36 -90.62 -0.49 -3.06 16 28 C -0.20 -2.76 10.18 -26.69 -0.27 -3.03 16 29 C -0.16 -2.59 9.78 -26.68 -0.26 -2.85 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 8.96 7.80 -40.82 -0.32 8.64 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.41 5.87 6.16 -40.82 -0.25 5.62 16 35 H 0.15 1.40 7.64 -52.49 -0.40 1.00 16 36 H 0.14 0.70 6.84 -52.49 -0.36 0.35 16 37 H 0.22 1.04 7.17 -52.49 -0.38 0.67 16 38 H 0.22 1.29 7.17 -52.48 -0.38 0.92 16 39 H 0.14 0.93 6.84 -52.49 -0.36 0.57 16 40 H 0.15 1.49 6.39 -52.49 -0.34 1.15 16 41 H 0.09 1.44 8.11 -51.93 -0.42 1.02 16 42 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.10 1.96 6.23 -51.93 -0.32 1.63 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -31.50 381.39 -10.40 -41.90 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -5.54 Total: 14.92 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -6.36 Total: -7.35 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.69 Total: -61.22 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.50 -10.40 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266433626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.721 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds