Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48499 * 109.46839 * 269.99675 * 3 2 1 5 5 H 1.48497 * 109.47228 * 30.00216 * 3 2 1 6 6 H 1.48506 * 109.46714 * 149.99922 * 3 2 1 7 7 C 1.38812 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99968 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99937 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.46996 * 325.00675 * 10 9 7 12 12 C 1.52999 * 109.47248 * 205.00080 * 10 9 7 13 13 N 1.46496 * 109.47278 * 55.00160 * 12 10 9 14 14 C 1.34769 * 120.00247 * 180.02562 * 13 12 10 15 15 O 1.21574 * 120.00114 * 359.97438 * 14 13 12 16 16 C 1.47677 * 120.00402 * 179.97438 * 14 13 12 17 17 C 1.39690 * 120.08296 * 179.97438 * 16 14 13 18 18 C 1.37740 * 119.91856 * 180.02562 * 17 16 14 19 19 C 1.39022 * 120.07847 * 0.02562 * 18 17 16 20 20 N 1.39925 * 119.91627 * 179.97438 * 19 18 17 21 21 C 1.36361 * 127.11781 * 359.68756 * 20 19 18 22 22 N 1.30501 * 107.19474 * 179.83747 * 21 20 19 23 23 N 1.28538 * 109.92081 * 0.43773 * 22 21 20 24 24 C 1.30496 * 109.92045 * 359.72258 * 23 22 21 25 25 C 1.39021 * 120.16281 * 0.25305 * 19 18 17 26 26 C 1.37729 * 120.07940 * 359.48774 * 25 19 18 27 27 C 1.53001 * 109.47029 * 85.00068 * 10 9 7 28 28 C 1.53002 * 117.49811 * 8.74622 * 27 10 9 29 29 C 1.52997 * 117.50038 * 300.08890 * 27 10 9 30 30 H 0.96994 * 120.00084 * 359.97438 * 1 2 3 31 31 H 0.97006 * 120.00321 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46794 * 295.00047 * 12 10 9 33 33 H 1.09001 * 109.46773 * 175.00358 * 12 10 9 34 34 H 0.97005 * 119.99795 * 359.97438 * 13 12 10 35 35 H 1.08006 * 120.04385 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.95947 * 179.97438 * 18 17 16 37 37 H 1.07996 * 126.39740 * 359.97438 * 21 20 19 38 38 H 1.07997 * 126.40407 * 179.97438 * 24 23 22 39 39 H 1.07999 * 119.95655 * 179.74576 * 25 19 18 40 40 H 1.08012 * 120.04151 * 180.25252 * 26 25 19 41 41 H 1.08999 * 115.55287 * 154.41752 * 27 10 9 42 42 H 1.08996 * 117.49947 * 0.02562 * 28 27 10 43 43 H 1.09005 * 117.49398 * 145.02005 * 28 27 10 44 44 H 1.09004 * 117.50228 * 214.97917 * 29 27 10 45 45 H 1.09002 * 117.49748 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 2.9683 -3.5508 -0.5885 12 6 1.1804 -4.7524 -0.6069 13 7 0.7328 -4.3364 -1.9383 14 6 -0.0575 -5.1485 -2.6678 15 8 -0.3987 -6.2265 -2.2212 16 6 -0.5092 -4.7289 -4.0097 17 6 -1.3280 -5.5695 -4.7675 18 6 -1.7469 -5.1750 -6.0190 19 6 -1.3553 -3.9421 -6.5283 20 7 -1.7824 -3.5450 -7.8002 21 6 -2.5730 -4.2489 -8.6598 22 7 -2.7297 -3.5158 -9.7280 23 7 -2.0863 -2.4106 -9.5989 24 6 -1.4892 -2.3766 -8.4391 25 6 -0.5358 -3.1054 -5.7794 26 6 -0.1174 -3.4909 -4.5251 27 6 2.4230 -4.0350 1.4385 28 6 1.8153 -3.1974 2.5655 29 6 3.3011 -3.0592 2.2245 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0023 32 1 0.3133 -4.9200 0.0321 33 1 1.7553 -5.6749 -0.6885 34 1 1.0047 -3.4761 -2.2945 35 1 -1.6323 -6.5277 -4.3727 36 1 -2.3796 -5.8246 -6.6056 37 1 -2.9930 -5.2289 -8.4876 38 1 -0.8770 -1.5733 -8.0567 39 1 -0.2302 -2.1501 -6.1799 40 1 0.5160 -2.8386 -3.9421 41 1 2.5644 -5.0999 1.6230 42 1 1.1551 -2.3773 2.2833 43 1 1.5572 -3.7114 3.4915 44 1 4.0199 -3.4822 2.9263 45 1 3.6191 -2.1481 1.7178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266433627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 120.999604 kcal Electronic energy + Delta-G solvation = -28412.819760 eV Core-core repulsion = 24433.447103 eV Total energy + Delta-G solvation = -3979.372657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.57569 -40.35211 -38.83044 -37.66499 -35.19610 -34.69880 -33.38941 -31.92540 -31.21225 -30.72903 -30.23576 -28.16196 -25.21515 -24.10897 -23.72548 -22.97004 -22.14927 -21.57305 -21.39490 -20.39413 -19.31810 -19.10153 -17.93229 -17.18380 -16.52063 -16.19746 -16.10063 -15.45534 -15.38157 -15.03430 -14.85590 -14.62640 -14.47951 -14.17268 -13.90174 -13.77220 -13.44175 -13.34326 -12.97483 -12.92143 -12.19829 -11.88264 -11.58592 -11.51016 -11.35339 -11.26180 -10.98662 -10.93777 -10.85220 -10.60713 -10.21448 -9.98088 -9.85727 -9.77318 -9.54666 -9.54036 -9.26306 -9.09467 -9.01627 -8.72960 -7.18814 -5.94643 -3.25469 0.09932 0.87182 1.58020 1.95989 2.50741 2.75736 3.27755 3.30842 3.37725 3.39218 3.59500 3.98294 4.10721 4.21408 4.37963 4.39926 4.54088 4.58982 4.72830 4.83640 4.86685 5.14060 5.24198 5.26993 5.36186 5.45622 5.47693 5.60809 5.64422 5.71790 5.76526 5.86875 5.88101 5.93943 5.96008 6.01674 6.16916 6.31625 6.33370 6.55165 6.58704 6.61499 6.74772 6.91815 7.19613 7.55423 7.70608 8.22059 8.27814 8.31750 9.34830 9.87527 10.23858 11.26406 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.002743 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.862587 B =10206.143899 C =12260.595352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.191 3.809 11 H 0.058 0.942 12 C 0.118 3.882 13 N -0.703 5.703 14 C 0.553 3.447 15 O -0.547 6.547 16 C -0.126 4.126 17 C -0.035 4.035 18 C -0.138 4.138 19 C 0.145 3.855 20 N -0.429 5.429 21 C 0.160 3.840 22 N -0.292 5.292 23 N -0.292 5.292 24 C 0.164 3.836 25 C -0.131 4.131 26 C -0.051 4.051 27 C -0.178 4.178 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.223 0.777 38 H 0.225 0.775 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 -10.058 -9.315 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.360 5.360 10 C 0.080 3.920 11 H 0.076 0.924 12 C -0.006 4.006 13 N -0.355 5.355 14 C 0.339 3.661 15 O -0.427 6.427 16 C -0.129 4.129 17 C -0.054 4.054 18 C -0.158 4.158 19 C 0.051 3.949 20 N -0.116 5.116 21 C -0.126 4.126 22 N -0.129 5.129 23 N -0.129 5.129 24 C -0.123 4.123 25 C -0.151 4.151 26 C -0.070 4.070 27 C -0.200 4.200 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.247 0.753 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.239 0.761 38 H 0.241 0.759 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.762 -10.184 -10.448 14.610 hybrid contribution 0.744 1.051 1.387 1.892 sum -0.018 -9.133 -9.061 12.865 Atomic orbital electron populations 1.69651 1.05013 1.25848 1.56928 1.24708 0.95405 0.97545 1.02626 0.86283 0.78814 0.84102 0.77512 1.21750 1.21827 1.20746 1.19154 0.90913 0.83739 1.43508 0.91036 1.42490 1.05836 0.99482 1.88180 1.20004 0.94057 0.86017 0.91877 0.92426 1.21648 0.98991 0.97610 0.82347 1.45919 1.49894 1.21623 1.18049 1.18066 0.78948 0.84483 0.84593 1.90762 1.57293 1.22485 1.72124 1.20205 1.01229 0.95762 0.95748 1.21146 0.93005 0.99539 0.91733 1.20781 1.03038 0.94779 0.97155 1.17916 0.98250 0.95589 0.83105 1.44312 1.37599 1.15951 1.13755 1.26808 0.97004 1.01340 0.87486 1.74244 1.18347 1.00031 1.20309 1.74254 1.09655 1.13992 1.15009 1.26880 1.03263 0.90857 0.91252 1.20805 0.99116 1.00135 0.95065 1.21390 0.96728 0.94805 0.94119 1.23057 1.06084 0.95394 0.95468 1.22915 0.96723 1.03480 0.96856 1.22856 0.93501 1.01854 1.03018 0.93384 0.77924 0.91356 0.91523 0.75256 0.83345 0.84417 0.76072 0.75918 0.84213 0.83506 0.89582 0.86344 0.91256 0.90988 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.81 13.06 55.49 0.72 -24.08 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.90 20.28 29.55 -169.99 -5.02 15.26 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.24 -5.62 8.16 -15.06 -0.12 -5.75 16 8 H 0.07 1.65 6.91 -52.49 -0.36 1.29 16 9 N -0.72 -14.66 3.08 -53.43 -0.16 -14.83 16 10 C 0.19 3.19 2.86 -67.93 -0.19 3.00 16 11 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 12 C 0.12 1.80 5.21 -4.04 -0.02 1.77 16 13 N -0.70 -10.19 5.34 -61.31 -0.33 -10.52 16 14 C 0.55 8.08 7.77 -12.41 -0.10 7.98 16 15 O -0.55 -9.50 16.34 5.30 0.09 -9.41 16 16 C -0.13 -1.47 5.87 -104.95 -0.62 -2.09 16 17 C -0.03 -0.34 9.58 -39.22 -0.38 -0.72 16 18 C -0.14 -1.10 9.46 -39.47 -0.37 -1.48 16 19 C 0.14 1.27 6.65 -83.58 -0.56 0.72 16 20 N -0.43 -3.92 2.99 -63.17 -0.19 -4.10 16 21 C 0.16 1.45 12.06 -89.16 -1.08 0.37 16 22 N -0.29 -3.65 12.19 29.85 0.36 -3.29 16 23 N -0.29 -3.72 12.19 29.85 0.36 -3.36 16 24 C 0.16 1.57 12.06 -89.16 -1.08 0.49 16 25 C -0.13 -1.16 9.46 -39.48 -0.37 -1.53 16 26 C -0.05 -0.53 9.53 -39.22 -0.37 -0.90 16 27 C -0.18 -2.88 5.71 -90.62 -0.52 -3.40 16 28 C -0.16 -2.87 9.74 -26.69 -0.26 -3.13 16 29 C -0.18 -2.95 9.87 -26.70 -0.26 -3.21 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.39 8.76 7.80 -40.82 -0.32 8.44 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.41 5.82 6.16 -40.82 -0.25 5.57 16 35 H 0.15 1.40 7.64 -52.48 -0.40 1.00 16 36 H 0.14 0.71 6.84 -52.49 -0.36 0.35 16 37 H 0.22 1.04 7.17 -52.49 -0.38 0.67 16 38 H 0.22 1.30 7.17 -52.49 -0.38 0.92 16 39 H 0.14 0.93 6.84 -52.49 -0.36 0.57 16 40 H 0.15 1.48 6.40 -52.48 -0.34 1.15 16 41 H 0.09 1.24 8.11 -51.93 -0.42 0.82 16 42 H 0.12 2.52 6.68 -51.93 -0.35 2.17 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.10 1.94 6.22 -51.93 -0.32 1.62 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -30.66 378.47 -10.33 -40.99 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -5.48 Total: 15.75 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -6.39 Total: -8.11 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.77 Total: -60.19 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.66 -10.33 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266433627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.992 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds