Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47314 * 270.00091 * 3 2 1 5 5 H 1.48496 * 109.46988 * 30.00683 * 3 2 1 6 6 H 1.48500 * 109.46892 * 150.00304 * 3 2 1 7 7 C 1.38796 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00632 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99905 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46754 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00064 * 354.65121 * 11 10 9 13 13 N 1.34773 * 119.99790 * 174.65367 * 11 10 9 14 14 C 1.46499 * 119.99968 * 184.99072 * 13 11 10 15 15 C 1.53003 * 109.46963 * 173.42060 * 14 13 11 16 16 H 1.08999 * 110.37062 * 54.23950 * 15 14 13 17 17 C 1.54379 * 110.41029 * 176.58963 * 15 14 13 18 18 C 1.54255 * 105.06118 * 142.63046 * 17 15 14 19 19 C 1.54379 * 105.06266 * 359.97438 * 18 17 15 20 20 N 1.48558 * 110.40851 * 291.75880 * 15 14 13 21 21 C 1.46903 * 111.00026 * 82.18616 * 20 15 14 22 22 H 1.09000 * 109.39699 * 290.66728 * 21 20 15 23 23 C 1.53062 * 109.40142 * 50.49783 * 21 20 15 24 24 C 1.53344 * 108.42771 * 169.03059 * 23 21 20 25 25 C 1.52918 * 108.67322 * 292.47178 * 24 23 21 26 26 N 1.45753 * 110.49137 * 50.74978 * 25 24 23 27 27 C 1.33238 * 124.06836 * 340.84560 * 26 25 24 28 28 O 1.21282 * 118.15929 * 182.28826 * 27 26 25 29 29 H 0.97002 * 120.00309 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46862 * 60.00116 * 10 9 7 31 31 H 1.08991 * 109.46949 * 299.99591 * 10 9 7 32 32 H 0.97001 * 120.00168 * 4.98534 * 13 11 10 33 33 H 1.08997 * 109.47265 * 53.41700 * 14 13 11 34 34 H 1.08995 * 109.46996 * 293.41390 * 14 13 11 35 35 H 1.08998 * 110.32381 * 23.72950 * 17 15 14 36 36 H 1.09007 * 110.32484 * 261.52552 * 17 15 14 37 37 H 1.09006 * 110.32528 * 241.10535 * 18 17 15 38 38 H 1.09004 * 110.41562 * 118.93876 * 18 17 15 39 39 H 1.08998 * 110.41114 * 94.92928 * 19 18 17 40 40 H 1.09000 * 110.41285 * 217.36841 * 19 18 17 41 41 H 1.09004 * 109.67523 * 288.76591 * 23 21 20 42 42 H 1.09003 * 109.67732 * 49.29646 * 23 21 20 43 43 H 1.09000 * 109.60065 * 52.22359 * 24 23 21 44 44 H 1.08994 * 109.60683 * 172.54854 * 24 23 21 45 45 H 1.09003 * 109.29914 * 171.06226 * 25 24 23 46 46 H 1.08999 * 109.30071 * 290.63881 * 25 24 23 47 47 H 0.97001 * 117.95272 * 160.92837 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7954 -5.5038 0.0984 13 7 2.8393 -6.3414 -0.1085 14 6 2.3196 -7.7067 -0.2180 15 6 3.4749 -8.6716 -0.4923 16 1 4.2509 -8.5593 0.2648 17 6 2.9634 -10.1278 -0.5272 18 6 3.7809 -10.8133 -1.6413 19 6 4.7171 -9.7135 -2.1865 20 7 4.0335 -8.4386 -1.8490 21 6 4.9831 -7.3177 -1.8420 22 1 4.4422 -6.3861 -1.6757 23 6 6.0020 -7.5216 -0.7181 24 6 7.1333 -6.5022 -0.8986 25 6 7.9086 -6.8512 -2.1696 26 7 6.9960 -7.0227 -3.2931 27 6 5.6903 -7.2547 -3.1653 28 8 5.0374 -7.4224 -4.1736 29 1 -0.4851 0.8400 0.0004 30 1 3.1244 -3.7313 0.8894 31 1 3.1244 -3.7314 -0.8905 32 1 3.7966 -6.1849 -0.1143 33 1 1.6015 -7.7576 -1.0365 34 1 1.8281 -7.9842 0.7144 35 1 1.9008 -10.1501 -0.7688 36 1 3.1449 -10.6159 0.4305 37 1 3.1195 -11.1720 -2.4300 38 1 4.3637 -11.6386 -1.2323 39 1 5.6892 -9.7643 -1.6960 40 1 4.8296 -9.8108 -3.2663 41 1 5.5196 -7.3674 0.2471 42 1 6.4073 -8.5323 -0.7690 43 1 6.7121 -5.5011 -0.9905 44 1 7.8009 -6.5405 -0.0379 45 1 8.6107 -6.0485 -2.3951 46 1 8.4599 -7.7782 -2.0123 47 1 7.3625 -6.9655 -4.1894 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266446992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = -57.329550 kcal Electronic energy + Delta-G solvation = -28539.096649 eV Core-core repulsion = 24655.142260 eV Total energy + Delta-G solvation = -3883.954389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37630 -39.38855 -38.50332 -36.71131 -34.45917 -33.82894 -32.41471 -31.28191 -30.74091 -28.73335 -28.27187 -25.55587 -25.21099 -24.45871 -23.05346 -21.75731 -20.76913 -20.08178 -19.10491 -17.83024 -17.73785 -16.91386 -16.43077 -16.33668 -16.05486 -15.49530 -15.16105 -15.02582 -14.79256 -14.69108 -14.47937 -14.41040 -13.90970 -13.81283 -13.36024 -13.12048 -12.89713 -12.68129 -12.57419 -12.16392 -11.98792 -11.78848 -11.72333 -11.67607 -11.57089 -11.51745 -11.35310 -11.05471 -11.01214 -10.75137 -10.69709 -9.93143 -9.80483 -9.40798 -9.36716 -9.05555 -8.83289 -8.70791 -8.21416 -6.47661 -6.20022 -3.90316 2.36569 2.85377 3.02100 3.16398 3.23119 3.28890 3.32650 3.53296 3.71014 4.05428 4.13401 4.20813 4.21792 4.32235 4.40896 4.48748 4.61590 4.74434 4.81445 4.90442 4.96913 5.03562 5.13277 5.15022 5.17098 5.29566 5.30538 5.34562 5.41276 5.52439 5.53382 5.64267 5.65273 5.70510 5.78657 5.85936 5.89321 6.01260 6.12917 6.39399 6.47174 6.59531 6.63708 7.00873 7.60465 7.68078 7.98273 8.36345 8.63633 9.25070 10.87406 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012835 B = 0.003034 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.056618 B = 9227.256523 C =10671.343666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.513 6.513 13 N -0.741 5.741 14 C 0.134 3.866 15 C 0.043 3.957 16 H 0.068 0.932 17 C -0.115 4.115 18 C -0.121 4.121 19 C 0.024 3.976 20 N -0.475 5.475 21 C 0.055 3.945 22 H 0.123 0.877 23 C -0.167 4.167 24 C -0.137 4.137 25 C 0.110 3.890 26 N -0.723 5.723 27 C 0.523 3.477 28 O -0.527 6.527 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.391 0.609 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.293 -21.680 -0.495 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.387 6.387 13 N -0.398 5.398 14 C 0.010 3.990 15 C -0.065 4.065 16 H 0.086 0.914 17 C -0.154 4.154 18 C -0.159 4.159 19 C -0.104 4.104 20 N -0.198 5.198 21 C -0.057 4.057 22 H 0.140 0.860 23 C -0.206 4.206 24 C -0.175 4.175 25 C -0.015 4.015 26 N -0.377 5.377 27 C 0.308 3.692 28 O -0.401 6.401 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.226 0.774 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 16.226 -21.871 -1.138 27.256 hybrid contribution 3.453 1.340 0.271 3.714 sum 19.679 -20.531 -0.867 28.452 Atomic orbital electron populations 1.70014 1.05941 1.27440 1.46821 1.24985 0.95019 0.98994 0.94567 0.86177 0.79385 0.81637 0.78345 1.20272 1.20753 1.19732 1.22861 0.94870 0.91708 1.58961 0.90993 1.85425 1.04772 0.96194 1.96678 1.23539 1.06661 0.95634 1.04663 1.20282 0.86529 0.86203 0.75233 1.90705 1.15570 1.85497 1.46945 1.46222 1.09545 1.06485 1.77543 1.21325 0.95383 0.80129 1.02171 1.23102 0.97036 0.95926 0.90425 0.91412 1.22249 1.01298 0.92793 0.99023 1.22250 0.98109 0.97127 0.98400 1.23252 0.95917 0.89245 1.01985 1.65537 1.28484 1.02155 1.23664 1.22001 0.92939 0.98873 0.91894 0.86009 1.22514 0.97232 1.00917 0.99974 1.21862 0.97884 1.00090 0.97658 1.21391 0.92020 1.01604 0.86463 1.45494 1.08050 1.73691 1.10494 1.19793 0.81789 0.76255 0.91352 1.90793 1.63709 1.47997 1.37649 0.92180 0.89277 0.89549 0.77365 0.90047 0.91146 0.90077 0.90760 0.90626 0.91257 0.93600 0.89549 0.89896 0.90261 0.90209 0.89256 0.90208 0.91761 0.76385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.57 20.58 -107.50 -2.21 -3.79 16 10 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 11 C 0.53 10.15 7.83 -10.99 -0.09 10.06 16 12 O -0.51 -11.92 15.88 5.55 0.09 -11.83 16 13 N -0.74 -10.18 4.64 -60.30 -0.28 -10.46 16 14 C 0.13 1.64 5.24 -4.04 -0.02 1.61 16 15 C 0.04 0.39 2.30 -66.07 -0.15 0.24 16 16 H 0.07 0.51 5.52 -51.93 -0.29 0.22 16 17 C -0.12 -0.86 6.55 -25.35 -0.17 -1.03 16 18 C -0.12 -0.87 7.00 -25.35 -0.18 -1.05 16 19 C 0.02 0.21 5.39 -2.19 -0.01 0.20 16 20 N -0.47 -5.00 4.92 -215.89 -1.06 -6.07 16 21 C 0.06 0.55 2.01 -69.08 -0.14 0.41 16 22 H 0.12 1.41 5.68 -51.93 -0.30 1.11 16 23 C -0.17 -1.05 4.01 -26.52 -0.11 -1.16 16 24 C -0.14 -0.68 6.02 -26.59 -0.16 -0.84 16 25 C 0.11 0.51 7.17 -4.49 -0.03 0.48 16 26 N -0.72 -5.66 5.44 -61.42 -0.33 -5.99 16 27 C 0.52 5.99 6.32 -11.92 -0.08 5.92 16 28 O -0.53 -8.45 16.96 5.56 0.09 -8.36 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.39 4.31 5.09 -40.82 -0.21 4.10 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.65 7.86 -51.93 -0.41 0.25 16 36 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.34 5.81 -51.93 -0.30 0.04 16 40 H 0.09 0.93 7.55 -51.93 -0.39 0.54 16 41 H 0.08 0.48 5.84 -51.93 -0.30 0.18 16 42 H 0.08 0.46 5.91 -51.93 -0.31 0.15 16 43 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 44 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 47 H 0.40 2.84 8.80 -40.82 -0.36 2.48 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -37.66 377.23 -10.07 -47.73 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.05 Total: 3.35 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -0.71 Total: -1.12 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.94 Total: -48.12 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.18 Total: -20.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.66 -10.07 -47.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266446992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.596 kcal (2) G-P(sol) polarization free energy of solvation -37.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds