Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48496 * 109.47314 * 270.00091 * 3 2 1 5 5 H 1.48496 * 109.46988 * 30.00683 * 3 2 1 6 6 H 1.48500 * 109.46892 * 150.00304 * 3 2 1 7 7 C 1.38796 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00632 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99905 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46754 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00064 * 354.65121 * 11 10 9 13 13 N 1.34773 * 119.99790 * 174.65367 * 11 10 9 14 14 C 1.46499 * 119.99968 * 184.99072 * 13 11 10 15 15 C 1.53003 * 109.46963 * 173.42060 * 14 13 11 16 16 H 1.08999 * 110.37062 * 54.23950 * 15 14 13 17 17 C 1.54379 * 110.41029 * 176.58963 * 15 14 13 18 18 C 1.54255 * 105.06118 * 142.63046 * 17 15 14 19 19 C 1.54379 * 105.06266 * 359.97438 * 18 17 15 20 20 N 1.48558 * 110.40851 * 291.75880 * 15 14 13 21 21 C 1.46903 * 111.00026 * 82.18616 * 20 15 14 22 22 H 1.09000 * 109.39699 * 290.66728 * 21 20 15 23 23 C 1.53062 * 109.40142 * 50.49783 * 21 20 15 24 24 C 1.53344 * 108.42771 * 169.03059 * 23 21 20 25 25 C 1.52918 * 108.67322 * 292.47178 * 24 23 21 26 26 N 1.45753 * 110.49137 * 50.74978 * 25 24 23 27 27 C 1.33238 * 124.06836 * 340.84560 * 26 25 24 28 28 O 1.21282 * 118.15929 * 182.28826 * 27 26 25 29 29 H 0.97002 * 120.00309 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46862 * 60.00116 * 10 9 7 31 31 H 1.08991 * 109.46949 * 299.99591 * 10 9 7 32 32 H 0.97001 * 120.00168 * 4.98534 * 13 11 10 33 33 H 1.08997 * 109.47265 * 53.41700 * 14 13 11 34 34 H 1.08995 * 109.46996 * 293.41390 * 14 13 11 35 35 H 1.08998 * 110.32381 * 23.72950 * 17 15 14 36 36 H 1.09007 * 110.32484 * 261.52552 * 17 15 14 37 37 H 1.09006 * 110.32528 * 241.10535 * 18 17 15 38 38 H 1.09004 * 110.41562 * 118.93876 * 18 17 15 39 39 H 1.08998 * 110.41114 * 94.92928 * 19 18 17 40 40 H 1.09000 * 110.41285 * 217.36841 * 19 18 17 41 41 H 1.09004 * 109.67523 * 288.76591 * 23 21 20 42 42 H 1.09003 * 109.67732 * 49.29646 * 23 21 20 43 43 H 1.09000 * 109.60065 * 52.22359 * 24 23 21 44 44 H 1.08994 * 109.60683 * 172.54854 * 24 23 21 45 45 H 1.09003 * 109.29914 * 171.06226 * 25 24 23 46 46 H 1.08999 * 109.30071 * 290.63881 * 25 24 23 47 47 H 0.97001 * 117.95272 * 160.92837 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7954 -5.5038 0.0984 13 7 2.8393 -6.3414 -0.1085 14 6 2.3196 -7.7067 -0.2180 15 6 3.4749 -8.6716 -0.4923 16 1 4.2509 -8.5593 0.2648 17 6 2.9634 -10.1278 -0.5272 18 6 3.7809 -10.8133 -1.6413 19 6 4.7171 -9.7135 -2.1865 20 7 4.0335 -8.4386 -1.8490 21 6 4.9831 -7.3177 -1.8420 22 1 4.4422 -6.3861 -1.6757 23 6 6.0020 -7.5216 -0.7181 24 6 7.1333 -6.5022 -0.8986 25 6 7.9086 -6.8512 -2.1696 26 7 6.9960 -7.0227 -3.2931 27 6 5.6903 -7.2547 -3.1653 28 8 5.0374 -7.4224 -4.1736 29 1 -0.4851 0.8400 0.0004 30 1 3.1244 -3.7313 0.8894 31 1 3.1244 -3.7314 -0.8905 32 1 3.7966 -6.1849 -0.1143 33 1 1.6015 -7.7576 -1.0365 34 1 1.8281 -7.9842 0.7144 35 1 1.9008 -10.1501 -0.7688 36 1 3.1449 -10.6159 0.4305 37 1 3.1195 -11.1720 -2.4300 38 1 4.3637 -11.6386 -1.2323 39 1 5.6892 -9.7643 -1.6960 40 1 4.8296 -9.8108 -3.2663 41 1 5.5196 -7.3674 0.2471 42 1 6.4073 -8.5323 -0.7690 43 1 6.7121 -5.5011 -0.9905 44 1 7.8009 -6.5405 -0.0379 45 1 8.6107 -6.0485 -2.3951 46 1 8.4599 -7.7782 -2.0123 47 1 7.3625 -6.9655 -4.1894 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266446992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = -87.880488 kcal Electronic energy + Delta-G solvation = -28540.421437 eV Core-core repulsion = 24655.142260 eV Total energy + Delta-G solvation = -3885.279177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.13670 -40.63257 -39.53324 -37.41869 -35.73575 -34.58558 -34.46909 -32.00796 -31.86498 -30.00829 -28.89493 -27.68596 -26.01699 -25.30633 -23.66415 -22.48142 -21.81089 -21.12758 -19.99634 -19.56723 -18.48034 -17.79076 -17.70619 -17.26340 -17.15260 -16.88132 -16.60111 -16.13174 -15.81892 -15.68212 -15.61566 -15.22564 -15.07406 -14.66962 -14.46459 -14.43200 -14.04477 -13.77555 -13.48724 -13.17373 -13.16983 -12.90429 -12.86858 -12.69519 -12.56421 -12.37159 -12.29295 -12.24722 -12.08498 -11.97901 -11.72459 -11.31375 -11.14546 -10.96509 -10.78497 -10.28546 -10.10224 -10.06949 -9.39954 -8.67254 -8.34467 -6.12950 1.25125 1.42594 1.45051 1.52022 1.56020 1.62647 2.18305 2.25101 2.28042 2.84550 2.99702 3.30426 3.40872 3.54151 3.62913 3.74114 3.81364 3.92103 3.95605 4.02993 4.13075 4.17675 4.25788 4.35959 4.45326 4.46797 4.51474 4.55462 4.63814 4.70622 4.80536 4.86950 4.92949 5.01512 5.02065 5.04312 5.19985 5.23741 5.27559 5.40441 5.41547 5.73152 5.81476 5.92090 6.19660 6.31102 6.40656 7.06492 7.19331 7.20295 8.74856 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012835 B = 0.003034 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.056618 B = 9227.256523 C =10671.343666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.562 6.562 13 N -0.714 5.714 14 C 0.133 3.867 15 C 0.053 3.947 16 H 0.096 0.904 17 C -0.113 4.113 18 C -0.116 4.116 19 C 0.028 3.972 20 N -0.506 5.506 21 C 0.054 3.946 22 H 0.100 0.900 23 C -0.160 4.160 24 C -0.136 4.136 25 C 0.103 3.897 26 N -0.713 5.713 27 C 0.517 3.483 28 O -0.588 6.588 29 H 0.271 0.729 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.408 0.592 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.310 -22.410 1.150 32.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.440 6.440 13 N -0.370 5.370 14 C 0.009 3.991 15 C -0.055 4.055 16 H 0.113 0.887 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.099 4.099 20 N -0.231 5.231 21 C -0.058 4.058 22 H 0.118 0.882 23 C -0.199 4.199 24 C -0.175 4.175 25 C -0.020 4.020 26 N -0.364 5.364 27 C 0.303 3.697 28 O -0.468 6.468 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.246 0.754 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.135 0.865 45 H 0.117 0.883 46 H 0.105 0.895 47 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 20.347 -22.632 0.527 30.438 hybrid contribution 2.283 1.457 -0.295 2.725 sum 22.630 -21.174 0.232 30.993 Atomic orbital electron populations 1.70186 1.08030 1.28617 1.47976 1.26148 0.95970 1.03373 0.93722 0.84943 0.78309 0.75933 0.78729 1.19498 1.20283 1.17875 1.23202 0.95366 0.91897 1.58911 0.89797 1.85627 1.10450 0.99261 1.97030 1.23370 1.03671 0.94466 1.06566 1.20099 0.86253 0.86709 0.75188 1.90692 1.17636 1.86031 1.49678 1.45974 1.09840 1.06105 1.75060 1.21465 0.96562 0.79612 1.01462 1.23077 0.96243 0.95692 0.90506 0.88693 1.22282 1.00587 0.91816 1.00428 1.22247 0.97857 0.97281 0.98005 1.23188 0.97171 0.88919 1.00623 1.65418 1.29806 1.03098 1.24769 1.21937 0.93535 0.97783 0.92523 0.88216 1.22493 0.96668 1.02140 0.98557 1.21922 0.97832 0.98948 0.98753 1.21714 0.91564 1.03515 0.85197 1.45556 1.07347 1.71629 1.11907 1.20157 0.82651 0.75620 0.91231 1.90760 1.65358 1.51115 1.39524 0.92000 0.86753 0.87936 0.75381 0.93031 0.90364 0.91295 0.88046 0.91801 0.88646 0.91494 0.92283 0.88820 0.88931 0.91335 0.86466 0.88316 0.89528 0.76137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.64 13.22 21.65 0.29 -56.36 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.55 -31.42 9.50 67.95 0.65 -30.77 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.54 20.58 -56.49 -1.16 -9.70 16 10 C -0.13 -5.25 6.16 71.24 0.44 -4.81 16 11 C 0.53 20.42 7.83 87.66 0.69 21.11 16 12 O -0.56 -27.05 15.88 -3.04 -0.05 -27.10 16 13 N -0.71 -18.99 4.64 -463.07 -2.15 -21.14 16 14 C 0.13 3.17 5.24 86.38 0.45 3.62 16 15 C 0.05 0.84 2.30 45.06 0.10 0.95 16 16 H 0.10 1.03 5.52 -2.39 -0.01 1.01 16 17 C -0.11 -1.44 6.55 31.49 0.21 -1.23 16 18 C -0.12 -1.45 7.00 31.49 0.22 -1.23 16 19 C 0.03 0.46 5.39 86.45 0.47 0.93 16 20 N -0.51 -10.29 4.92 -836.96 -4.12 -14.41 16 21 C 0.05 1.02 2.01 44.03 0.09 1.10 16 22 H 0.10 2.25 5.68 -2.39 -0.01 2.24 16 23 C -0.16 -1.45 4.01 30.73 0.12 -1.33 16 24 C -0.14 -0.84 6.02 30.68 0.18 -0.66 16 25 C 0.10 0.61 7.17 86.49 0.62 1.23 16 26 N -0.71 -10.11 5.44 -467.47 -2.54 -12.66 16 27 C 0.52 11.75 6.32 87.73 0.55 12.30 16 28 O -0.59 -19.78 16.96 -3.04 -0.05 -19.83 16 29 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 31 H 0.10 3.82 8.14 -2.40 -0.02 3.80 16 32 H 0.41 8.19 5.09 -92.71 -0.47 7.71 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.06 7.86 -2.39 -0.02 1.04 16 36 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.07 0.78 5.81 -2.39 -0.01 0.77 16 40 H 0.06 1.30 7.55 -2.39 -0.02 1.28 16 41 H 0.09 0.67 5.84 -2.38 -0.01 0.66 16 42 H 0.09 0.64 5.91 -2.39 -0.01 0.62 16 43 H 0.07 0.61 8.12 -2.39 -0.02 0.60 16 44 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.10 0.28 8.14 -2.39 -0.02 0.27 16 46 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.40 5.36 8.80 -92.71 -0.82 4.54 16 Total: -1.00 -87.83 377.23 -2.79 -90.62 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.28 Total: 22.42 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 5.26 Total: 2.39 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -8.53 Total: -104.56 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.10 Total: -46.93 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -87.83 -2.79 -90.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266446992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.740 kcal (2) G-P(sol) polarization free energy of solvation -87.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds