Wall clock time and date at job start Sat Apr 11 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99541 * 2 1 4 4 H 1.48506 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47374 * 299.99779 * 3 2 1 6 6 H 1.48495 * 109.47381 * 59.99927 * 3 2 1 7 7 C 1.38809 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99855 * 160.17473 * 7 2 1 9 9 N 1.36937 * 120.00076 * 340.17139 * 7 2 1 10 10 C 1.46495 * 120.00014 * 321.77722 * 9 7 2 11 11 C 1.52998 * 109.47005 * 270.00080 * 10 9 7 12 12 N 1.46509 * 109.47171 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00028 * 179.97438 * 12 11 10 14 14 O 1.21620 * 120.00202 * 4.78861 * 13 12 11 15 15 C 1.47151 * 119.99712 * 184.78682 * 13 12 11 16 16 C 1.37082 * 127.21195 * 352.89804 * 15 13 12 17 17 N 1.33310 * 106.37010 * 179.87963 * 16 15 13 18 18 N 1.28499 * 109.49909 * 0.39468 * 17 16 15 19 19 N 1.28717 * 110.67590 * 359.74871 * 18 17 16 20 20 C 1.40076 * 126.06454 * 180.02562 * 19 18 17 21 21 C 1.38865 * 120.07353 * 135.76687 * 20 19 18 22 22 C 1.38106 * 119.92904 * 179.69925 * 21 20 19 23 23 C 1.38288 * 120.07179 * 0.56961 * 22 21 20 24 24 C 1.38286 * 120.13816 * 359.72645 * 23 22 21 25 25 C 1.38114 * 120.06609 * 359.97438 * 24 23 22 26 26 C 1.46498 * 119.99976 * 141.77712 * 9 7 2 27 27 C 1.53000 * 117.49682 * 3.25155 * 26 9 7 28 28 C 1.52997 * 117.50034 * 294.62916 * 26 9 7 29 29 H 0.96998 * 120.00535 * 355.02235 * 1 2 3 30 30 H 1.09001 * 109.47408 * 149.99990 * 10 9 7 31 31 H 1.09003 * 109.47448 * 29.99753 * 10 9 7 32 32 H 1.09002 * 109.47234 * 299.99501 * 11 10 9 33 33 H 1.08997 * 109.47660 * 60.00204 * 11 10 9 34 34 H 0.97005 * 119.99855 * 0.02562 * 12 11 10 35 35 H 1.07997 * 126.81236 * 0.02562 * 16 15 13 36 36 H 1.07994 * 120.03199 * 359.96805 * 21 20 19 37 37 H 1.08004 * 119.96662 * 180.29310 * 22 21 20 38 38 H 1.07998 * 119.93228 * 179.74294 * 23 22 21 39 39 H 1.07995 * 119.96170 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.02918 * 180.02562 * 25 24 23 41 41 H 1.08994 * 115.55340 * 148.95263 * 26 9 7 42 42 H 1.08999 * 117.50319 * 359.97438 * 27 26 9 43 43 H 1.09001 * 117.50201 * 145.02768 * 27 26 9 44 44 H 1.09002 * 117.50287 * 214.97855 * 28 26 9 45 45 H 1.09002 * 117.49707 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0423 -1.2299 -0.3167 9 7 1.3866 -2.3527 0.4033 10 6 0.4459 -2.3215 1.5259 11 6 1.2014 -2.5775 2.8315 12 7 0.2606 -2.5469 3.9542 13 6 0.7041 -2.7491 5.2108 14 8 1.8955 -2.8701 5.4231 15 6 -0.2533 -2.8234 6.3258 16 6 -1.6007 -2.5758 6.2795 17 7 -2.0606 -2.7670 7.5160 18 7 -1.0890 -3.0996 8.2884 19 7 0.0169 -3.1494 7.6317 20 6 1.2734 -3.4785 8.1564 21 6 2.1110 -4.3442 7.4654 22 6 3.3516 -4.6617 7.9824 23 6 3.7553 -4.1279 9.1926 24 6 2.9210 -3.2704 9.8861 25 6 1.6816 -2.9441 9.3713 26 6 1.6599 -3.6148 -0.2884 27 6 2.7082 -3.5969 -1.4028 28 6 1.2240 -3.7278 -1.7506 29 1 -0.4851 0.8368 0.0729 30 1 -0.3113 -3.0932 1.3871 31 1 -0.0350 -1.3443 1.5701 32 1 1.6822 -3.5547 2.7875 33 1 1.9586 -1.8059 2.9705 34 1 -0.6816 -2.3820 3.7931 35 1 -2.1760 -2.2859 5.4126 36 1 1.7943 -4.7652 6.5227 37 1 4.0055 -5.3312 7.4432 38 1 4.7243 -4.3811 9.5968 39 1 3.2390 -2.8555 10.8311 40 1 1.0307 -2.2740 9.9133 41 1 1.5946 -4.5120 0.3270 42 1 3.1941 -2.6461 -1.6215 43 1 3.3327 -4.4825 -1.5206 44 1 0.8721 -4.6995 -2.0973 45 1 0.7334 -2.8633 -2.1978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267334083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:28 Heat of formation + Delta-G solvation = 152.997972 kcal Electronic energy + Delta-G solvation = -28916.562419 eV Core-core repulsion = 24938.577316 eV Total energy + Delta-G solvation = -3977.985103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.64723 -39.57163 -39.25831 -37.18747 -35.22790 -34.61028 -33.37375 -31.94318 -31.28964 -30.68602 -30.15289 -27.82480 -25.06411 -24.30745 -23.89484 -22.91776 -22.11133 -21.51521 -21.23952 -20.45456 -19.85197 -18.86975 -17.29742 -16.87349 -16.65732 -16.25750 -15.77474 -15.52870 -15.20764 -15.08701 -14.73721 -14.67263 -14.23757 -13.98639 -13.82761 -13.73844 -13.23631 -12.89598 -12.73850 -12.25798 -12.08584 -12.02181 -11.69639 -11.61831 -11.45580 -11.13366 -10.88052 -10.82112 -10.80050 -10.41743 -10.25601 -10.12218 -9.92081 -9.71350 -9.69144 -9.37201 -9.24902 -8.96810 -8.79099 -8.59404 -6.70313 -5.93013 -3.58815 0.32865 1.05498 1.21664 1.86246 2.14434 3.08432 3.15099 3.27609 3.37121 3.38117 3.39627 4.19634 4.34046 4.42397 4.54267 4.57331 4.74312 4.78425 4.85997 5.00144 5.02740 5.19322 5.20520 5.21904 5.36702 5.65427 5.72067 5.82682 5.89751 5.95638 5.96345 6.01516 6.09707 6.15298 6.18440 6.27171 6.34510 6.43380 6.49100 6.61333 6.65303 6.84650 6.97807 7.16192 7.36817 7.55679 7.69001 8.08988 8.18395 8.34963 9.00102 9.60979 10.17399 11.02711 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.002801 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.543647 B = 9995.701829 C =10304.960620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.016 3.984 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.546 5.546 10 C 0.138 3.862 11 C 0.100 3.900 12 N -0.697 5.697 13 C 0.582 3.418 14 O -0.529 6.529 15 C -0.059 4.059 16 C 0.003 3.997 17 N -0.267 5.267 18 N -0.058 5.058 19 N -0.210 5.210 20 C 0.103 3.897 21 C -0.054 4.054 22 C -0.109 4.109 23 C -0.099 4.099 24 C -0.117 4.117 25 C -0.090 4.090 26 C 0.118 3.882 27 C -0.194 4.194 28 C -0.219 4.219 29 H 0.255 0.745 30 H 0.035 0.965 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.401 0.599 35 H 0.204 0.796 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 -8.587 14.936 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.185 4.185 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.263 5.263 10 C 0.011 3.989 11 C -0.025 4.025 12 N -0.348 5.348 13 C 0.364 3.636 14 O -0.406 6.406 15 C -0.192 4.192 16 C -0.156 4.156 17 N -0.130 5.130 18 N -0.037 5.037 19 N -0.001 5.001 20 C 0.014 3.986 21 C -0.074 4.074 22 C -0.128 4.128 23 C -0.117 4.117 24 C -0.135 4.135 25 C -0.109 4.109 26 C 0.009 3.991 27 C -0.232 4.232 28 C -0.259 4.259 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.236 0.764 35 H 0.221 0.779 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.116 -8.691 16.343 18.631 hybrid contribution 0.401 1.214 -1.232 1.776 sum 2.518 -7.477 15.111 17.046 Atomic orbital electron populations 1.70032 1.05500 1.26271 1.50603 1.25211 0.95054 0.98866 0.99357 0.86347 0.79954 0.83797 0.77449 1.19882 1.21471 1.21280 1.19112 0.93587 0.84930 1.41509 0.91494 1.43177 1.49888 1.03045 1.30185 1.21056 0.91030 1.03478 0.83334 1.22522 0.92994 1.01462 0.85502 1.45847 1.13047 1.70431 1.05467 1.16707 0.86607 0.78363 0.81879 1.90855 1.15499 1.50555 1.83717 1.22314 0.96885 1.12454 0.87536 1.23984 0.90997 1.02875 0.97739 1.74897 1.21440 1.15241 1.01463 1.78368 0.87099 1.17414 1.20786 1.44717 1.07562 1.41955 1.05839 1.17514 0.82466 1.01955 0.96684 1.21052 0.93728 0.94163 0.98447 1.21041 0.95272 1.00530 0.95925 1.21373 0.99698 0.95950 0.94688 1.21011 0.93215 0.98749 1.00574 1.20998 0.97039 0.99113 0.93791 1.21244 1.00873 0.90177 0.86762 1.23030 0.92075 1.01952 1.06175 1.23341 0.97159 1.00978 1.04462 0.93448 0.94701 0.87902 0.92639 0.90957 0.76405 0.77905 0.84832 0.84654 0.85083 0.84750 0.84868 0.89515 0.88399 0.90713 0.91184 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.29 11.41 55.49 0.63 -22.66 16 2 C 0.02 0.41 4.99 -17.43 -0.09 0.32 16 3 Si 0.90 20.53 29.60 -169.99 -5.03 15.50 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.26 -6.59 8.52 -15.06 -0.13 -6.72 16 8 H 0.07 1.71 6.69 -52.49 -0.35 1.36 16 9 N -0.55 -12.34 2.76 -165.67 -0.46 -12.80 16 10 C 0.14 2.78 5.45 -4.05 -0.02 2.76 16 11 C 0.10 1.78 6.00 -4.04 -0.02 1.76 16 12 N -0.70 -10.23 5.55 -61.47 -0.34 -10.57 16 13 C 0.58 8.99 7.41 -12.64 -0.09 8.89 16 14 O -0.53 -9.47 13.21 5.26 0.07 -9.40 16 15 C -0.06 -0.84 6.79 -82.23 -0.56 -1.40 16 16 C 0.00 0.04 11.55 -17.33 -0.20 -0.16 16 17 N -0.27 -3.87 12.34 30.49 0.38 -3.50 16 18 N -0.06 -0.86 12.94 60.35 0.78 -0.08 16 19 N -0.21 -3.02 3.49 -7.21 -0.03 -3.05 16 20 C 0.10 1.37 5.90 -83.62 -0.49 0.88 16 21 C -0.05 -0.67 7.43 -39.40 -0.29 -0.97 16 22 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 23 C -0.10 -0.84 10.04 -39.55 -0.40 -1.23 16 24 C -0.12 -1.02 10.04 -39.61 -0.40 -1.42 16 25 C -0.09 -0.99 9.81 -39.39 -0.39 -1.38 16 26 C 0.12 2.35 6.56 -67.93 -0.45 1.91 16 27 C -0.19 -3.64 9.80 -26.73 -0.26 -3.90 16 28 C -0.22 -4.21 10.36 -26.73 -0.28 -4.49 16 29 H 0.26 6.54 8.32 -40.82 -0.34 6.20 16 30 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.10 2.34 5.50 -51.93 -0.29 2.06 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.40 4.83 7.52 -40.82 -0.31 4.53 16 35 H 0.20 1.75 7.57 -52.49 -0.40 1.35 16 36 H 0.13 1.79 6.71 -52.49 -0.35 1.44 16 37 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 42 H 0.10 2.01 6.44 -51.93 -0.33 1.68 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -30.21 381.20 -8.52 -38.73 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.81 Total: 8.70 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -4.46 Total: -6.63 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.97 Total: -52.65 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.21 -8.52 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267334083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.728 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds