Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48502 * 109.47018 * 95.10507 * 3 2 1 5 5 H 1.48503 * 109.46832 * 215.10389 * 3 2 1 6 6 H 1.48496 * 109.47015 * 335.10608 * 3 2 1 7 7 C 1.38820 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99553 * 355.07805 * 7 2 1 9 9 N 1.36935 * 120.00058 * 175.07681 * 7 2 1 10 10 C 1.46500 * 119.99736 * 185.05187 * 9 7 2 11 11 C 1.53003 * 109.46734 * 175.01319 * 10 9 7 12 12 H 1.08994 * 109.87783 * 304.61510 * 11 10 9 13 13 C 1.54331 * 109.88086 * 65.62934 * 11 10 9 14 14 C 1.55158 * 102.94020 * 141.60684 * 13 11 10 15 15 C 1.54903 * 101.58238 * 324.49931 * 14 13 11 16 16 N 1.47026 * 109.88078 * 183.43423 * 11 10 9 17 17 C 1.34774 * 125.64426 * 61.62244 * 16 11 10 18 18 O 1.21597 * 120.00001 * 5.22509 * 17 16 11 19 19 C 1.47507 * 119.99632 * 185.21894 * 17 16 11 20 20 C 1.36620 * 125.76673 * 180.02562 * 19 17 16 21 21 N 1.35080 * 106.79677 * 180.02562 * 20 19 17 22 22 C 1.40230 * 126.61301 * 179.97438 * 21 20 19 23 23 C 1.38823 * 120.06443 * 359.71964 * 22 21 20 24 24 C 1.38127 * 119.93090 * 179.75171 * 23 22 21 25 25 C 1.38276 * 120.06387 * 0.52684 * 24 23 22 26 26 C 1.38277 * 120.13303 * 359.74365 * 25 24 23 27 27 C 1.38121 * 120.06478 * 359.97438 * 26 25 24 28 28 N 1.40208 * 106.77442 * 359.97438 * 21 20 19 29 29 N 1.28764 * 108.38285 * 359.72812 * 28 21 20 30 30 H 0.96998 * 119.99547 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99528 * 5.04542 * 9 7 2 32 32 H 1.08999 * 109.46876 * 295.01088 * 10 9 7 33 33 H 1.08992 * 109.47604 * 55.01594 * 10 9 7 34 34 H 1.09000 * 110.72035 * 259.96764 * 13 11 10 35 35 H 1.08999 * 110.71980 * 23.24397 * 13 11 10 36 36 H 1.09001 * 111.00186 * 82.57130 * 14 13 11 37 37 H 1.08997 * 111.00776 * 206.42210 * 14 13 11 38 38 H 1.09005 * 110.36975 * 155.85086 * 15 14 13 39 39 H 1.08997 * 110.36892 * 278.05790 * 15 14 13 40 40 H 1.08008 * 126.60463 * 359.97438 * 20 19 17 41 41 H 1.08000 * 120.03717 * 0.02562 * 23 22 21 42 42 H 1.08001 * 119.97023 * 180.29757 * 24 23 22 43 43 H 1.08000 * 119.93087 * 179.72775 * 25 24 23 44 44 H 1.08002 * 119.96407 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.02979 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6056 1.9841 1.3945 5 1 3.4897 1.4736 -0.8052 6 1 1.3979 2.6814 -0.5893 7 6 2.0103 -1.2022 0.0005 8 1 1.4732 -2.1357 0.0812 9 7 3.3759 -1.2045 -0.1012 10 6 4.1000 -2.4732 -0.2122 11 6 5.5874 -2.1934 -0.4362 12 1 5.7167 -1.5521 -1.3080 13 6 6.1867 -1.5104 0.8112 14 6 7.5928 -2.1575 0.9199 15 6 7.3068 -3.6042 0.4459 16 7 6.3104 -3.4588 -0.6308 17 6 6.0971 -4.3399 -1.6280 18 8 5.3123 -4.0730 -2.5176 19 6 6.8159 -5.6279 -1.6403 20 6 6.6910 -6.6031 -2.5890 21 7 7.5166 -7.6087 -2.2262 22 6 7.7123 -8.8178 -2.9091 23 6 7.0146 -9.0753 -4.0813 24 6 7.2132 -10.2650 -4.7544 25 6 8.0978 -11.2036 -4.2559 26 6 8.7900 -10.9523 -3.0855 27 6 8.5999 -9.7620 -2.4111 28 7 8.1403 -7.2105 -1.0353 29 7 7.7090 -6.0381 -0.7234 30 1 -0.4849 0.8401 -0.0004 31 1 3.8636 -0.3661 -0.1000 32 1 3.9723 -3.0459 0.7064 33 1 3.7069 -3.0436 -1.0536 34 1 6.2682 -0.4341 0.6599 35 1 5.5906 -1.7325 1.6963 36 1 8.3028 -1.6625 0.2574 37 1 7.9492 -2.1470 1.9499 38 1 8.2170 -4.0642 0.0609 39 1 6.8996 -4.1980 1.2642 40 1 6.0540 -6.5756 -3.4609 41 1 6.3205 -8.3443 -4.4690 42 1 6.6744 -10.4639 -5.6690 43 1 8.2482 -12.1349 -4.7816 44 1 9.4806 -11.6871 -2.6988 45 1 9.1411 -9.5661 -1.4973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267958792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 99.887683 kcal Electronic energy + Delta-G solvation = -28501.231987 eV Core-core repulsion = 24520.943849 eV Total energy + Delta-G solvation = -3980.288138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.64471 -41.19066 -40.19959 -38.70111 -36.60456 -35.78821 -33.75901 -32.91136 -32.43401 -31.77902 -30.99718 -30.39906 -26.86072 -25.99958 -25.35005 -24.32305 -23.64704 -22.76698 -22.56978 -21.75320 -20.78460 -19.90012 -19.16429 -18.00247 -17.73392 -17.31244 -17.03797 -16.65938 -16.47057 -16.30800 -15.78602 -15.60921 -15.38832 -15.16439 -15.01242 -14.76786 -14.53725 -14.26777 -14.16609 -14.06968 -13.77377 -13.53369 -13.25429 -13.05176 -12.87921 -12.78812 -12.55093 -12.36615 -12.26045 -12.11269 -11.92800 -11.84510 -11.77518 -11.60862 -11.31508 -10.97675 -10.75674 -10.10631 -9.78201 -9.59147 -9.35886 -8.04938 -5.40653 -0.69284 0.25388 0.39251 0.69434 0.77514 1.37374 1.43216 1.49840 1.74109 2.05586 2.48020 2.67577 2.90071 3.11015 3.24061 3.48892 3.57691 3.63624 3.73319 3.78804 3.82993 3.95866 3.97255 4.14951 4.22057 4.29075 4.30953 4.34129 4.47242 4.48709 4.57498 4.78305 4.87376 4.90654 4.94940 4.99284 5.10711 5.12371 5.20827 5.25927 5.32872 5.38275 5.42294 5.44303 5.71059 5.86515 6.17151 6.34705 6.60889 6.93684 7.03911 7.75477 8.00291 9.16412 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.002262 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.309525 B =12374.616014 C =13441.370802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.063 4.063 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.252 1.252 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.047 0.953 9 N -0.746 5.746 10 C 0.155 3.845 11 C 0.133 3.867 12 H 0.070 0.930 13 C -0.124 4.124 14 C -0.118 4.118 15 C 0.102 3.898 16 N -0.598 5.598 17 C 0.609 3.391 18 O -0.565 6.565 19 C -0.104 4.104 20 C 0.103 3.897 21 N -0.300 5.300 22 C 0.097 3.903 23 C -0.129 4.129 24 C -0.097 4.097 25 C -0.106 4.106 26 C -0.100 4.100 27 C -0.116 4.116 28 N -0.074 5.074 29 N -0.201 5.201 30 H 0.260 0.740 31 H 0.370 0.630 32 H 0.021 0.979 33 H 0.012 0.988 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.232 0.768 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.384 -22.639 -7.131 35.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.255 4.255 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.176 1.176 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.065 0.935 9 N -0.393 5.393 10 C 0.028 3.972 11 C 0.029 3.971 12 H 0.088 0.912 13 C -0.162 4.162 14 C -0.156 4.156 15 C -0.019 4.019 16 N -0.330 5.330 17 C 0.397 3.603 18 O -0.444 6.444 19 C -0.243 4.243 20 C -0.052 4.052 21 N -0.078 5.078 22 C 0.007 3.993 23 C -0.149 4.149 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.136 4.136 28 N -0.053 5.053 29 N -0.075 5.075 30 H 0.069 0.931 31 H 0.203 0.797 32 H 0.039 0.961 33 H 0.030 0.970 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.248 0.752 41 H 0.164 0.836 42 H 0.181 0.819 43 H 0.180 0.820 44 H 0.178 0.822 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 26.768 -23.012 -6.523 35.898 hybrid contribution -1.194 1.245 -0.685 1.856 sum 25.574 -21.767 -7.208 34.348 Atomic orbital electron populations 1.69915 1.07288 1.26979 1.59007 1.25616 0.96255 1.01673 1.01933 0.85358 0.78488 0.78640 0.78920 1.19091 1.17631 1.22053 1.18942 0.82837 0.93528 1.41995 0.93516 1.42365 1.02986 1.03637 1.90302 1.20904 0.90938 0.88000 0.97371 1.21733 0.90551 0.84869 0.99900 0.91216 1.22731 0.97008 1.00791 0.95664 1.22834 0.95710 0.93013 1.04035 1.22647 0.91600 0.98751 0.88944 1.48316 1.37576 1.20288 1.26801 1.16650 0.80884 0.81767 0.81038 1.90841 1.38136 1.77599 1.37787 1.21198 1.06052 0.99119 0.97898 1.23710 0.94317 0.86302 1.00851 1.47737 1.28448 1.13298 1.18286 1.18042 1.02699 0.83718 0.94892 1.21289 1.00141 1.00329 0.93191 1.21458 0.97892 0.91737 1.00414 1.21812 0.94637 1.00476 0.95508 1.21462 0.99587 0.95705 0.95060 1.21127 0.97537 0.93642 1.01306 1.81971 1.18676 1.07317 0.97296 1.74680 1.07365 1.04276 1.21162 0.93134 0.79659 0.96101 0.97031 0.88748 0.90314 0.89447 0.86888 0.88622 0.90991 0.75165 0.83585 0.81907 0.81997 0.82212 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.19 13.97 21.65 0.30 -64.88 16 2 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.96 46.36 27.67 68.60 1.90 48.26 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.25 -11.02 6.63 99.48 0.66 -10.36 16 6 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 7 C -0.24 -14.84 10.47 84.04 0.88 -13.96 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 9 N -0.75 -37.73 5.25 -343.45 -1.80 -39.53 16 10 C 0.16 6.92 5.64 86.38 0.49 7.41 16 11 C 0.13 4.57 2.94 45.34 0.13 4.70 16 12 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.12 -3.23 6.01 31.79 0.19 -3.04 16 14 C -0.12 -2.23 7.08 31.98 0.23 -2.00 16 15 C 0.10 2.41 5.95 86.85 0.52 2.93 16 16 N -0.60 -18.79 3.06 -791.80 -2.43 -21.21 16 17 C 0.61 20.77 7.57 86.69 0.66 21.42 16 18 O -0.57 -23.09 16.05 -4.02 -0.06 -23.16 16 19 C -0.10 -2.94 6.83 40.82 0.28 -2.66 16 20 C 0.10 2.30 10.60 83.81 0.89 3.19 16 21 N -0.30 -6.38 3.82 -186.88 -0.71 -7.09 16 22 C 0.10 1.56 6.69 38.08 0.25 1.82 16 23 C -0.13 -1.45 9.47 22.38 0.21 -1.24 16 24 C -0.10 -0.64 10.04 22.25 0.22 -0.42 16 25 C -0.11 -0.55 10.04 22.29 0.22 -0.33 16 26 C -0.10 -0.75 10.04 22.25 0.22 -0.52 16 27 C -0.12 -1.56 9.68 22.38 0.22 -1.34 16 28 N -0.07 -1.85 13.12 37.02 0.49 -1.37 16 29 N -0.20 -5.44 9.53 -49.99 -0.48 -5.92 16 30 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 31 H 0.37 17.14 5.34 -92.71 -0.50 16.65 16 32 H 0.02 0.95 8.06 -2.39 -0.02 0.93 16 33 H 0.01 0.59 6.93 -2.39 -0.02 0.57 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.10 2.15 6.47 -2.38 -0.02 2.13 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.23 3.76 7.13 -2.91 -0.02 3.74 16 41 H 0.15 1.25 6.81 -2.91 -0.02 1.23 16 42 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 43 H 0.16 -0.10 8.06 -2.91 -0.02 -0.13 16 44 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 45 H 0.13 1.90 7.73 -2.91 -0.02 1.88 16 Total: -1.00 -83.66 375.40 3.77 -79.89 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.48 Total: 22.46 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.08 Total: 12.55 kcal Atomic # 7 Polarization: -135.37 SS G_CDS: -4.63 Total: -140.00 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.06 Total: -23.16 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.26 kcal Total: -83.66 3.77 -79.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267958792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.777 kcal (2) G-P(sol) polarization free energy of solvation -83.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds