Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99802 * 2 1 4 4 H 1.48505 * 109.47063 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47105 * 119.99456 * 3 2 1 6 6 H 1.48502 * 109.47051 * 239.99555 * 3 2 1 7 7 C 1.38811 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00337 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47393 * 187.49283 * 10 9 7 12 12 H 1.08996 * 109.87440 * 313.15396 * 11 10 9 13 13 C 1.54323 * 109.88046 * 192.13723 * 11 10 9 14 14 C 1.55168 * 102.93873 * 218.39054 * 13 11 10 15 15 C 1.54911 * 101.57913 * 35.50521 * 14 13 11 16 16 N 1.47027 * 109.87829 * 74.32881 * 11 10 9 17 17 C 1.34777 * 125.64899 * 298.31119 * 16 11 10 18 18 O 1.21552 * 119.99937 * 3.44384 * 17 16 11 19 19 C 1.47852 * 119.99825 * 183.44634 * 17 16 11 20 20 C 1.39621 * 120.11306 * 336.89447 * 19 17 16 21 21 C 1.37975 * 119.98410 * 179.97438 * 20 19 17 22 22 C 1.38272 * 120.21707 * 0.02562 * 21 20 19 23 23 C 1.38905 * 120.22594 * 359.97438 * 22 21 20 24 24 N 1.40271 * 119.99279 * 180.02562 * 23 22 21 25 25 C 1.36115 * 125.94323 * 4.99805 * 24 23 22 26 26 C 1.35366 * 106.05197 * 179.97438 * 25 24 23 27 27 N 1.33776 * 106.53974 * 0.02562 * 26 25 24 28 28 N 1.28608 * 109.05741 * 359.76961 * 27 26 25 29 29 C 1.38581 * 120.01223 * 359.74585 * 23 22 21 30 30 H 0.96998 * 119.99149 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99811 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47064 * 307.49856 * 10 9 7 33 33 H 1.09005 * 109.46876 * 67.49650 * 10 9 7 34 34 H 1.08996 * 110.72255 * 336.75285 * 13 11 10 35 35 H 1.08998 * 110.72223 * 100.03211 * 13 11 10 36 36 H 1.08998 * 110.99920 * 153.57315 * 14 13 11 37 37 H 1.09000 * 111.00402 * 277.38913 * 14 13 11 38 38 H 1.09000 * 110.36888 * 81.82966 * 15 14 13 39 39 H 1.09002 * 110.36070 * 204.04227 * 15 14 13 40 40 H 1.08001 * 120.00909 * 0.02562 * 20 19 17 41 41 H 1.08000 * 119.89581 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.88788 * 179.97438 * 22 21 20 43 43 H 1.07997 * 126.97029 * 359.94680 * 25 24 23 44 44 H 1.08003 * 126.73025 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.11153 * 180.25352 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6966 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0747 -4.8135 -0.1876 12 1 0.2209 -4.6859 0.4778 13 6 1.7779 -6.1542 0.1121 14 6 1.1839 -7.1054 -0.9603 15 6 1.0294 -6.1512 -2.1709 16 7 0.6207 -4.8615 -1.5852 17 6 -0.0575 -3.8881 -2.2246 18 8 -0.2887 -2.8368 -1.6599 19 6 -0.5204 -4.0990 -3.6129 20 6 0.1133 -5.0396 -4.4272 21 6 -0.3212 -5.2347 -5.7222 22 6 -1.3831 -4.5009 -6.2179 23 6 -2.0200 -3.5628 -5.4155 24 7 -3.0971 -2.8215 -5.9232 25 6 -3.6770 -2.9879 -7.1433 26 6 -4.6689 -2.0695 -7.2147 27 7 -4.6495 -1.3972 -6.0583 28 7 -3.7121 -1.8683 -5.3144 29 6 -1.5951 -3.3633 -4.1116 30 1 -0.4849 -0.8401 -0.0004 31 1 0.3558 -2.3880 0.0005 32 1 2.7816 -3.6586 -0.8148 33 1 2.5805 -3.7747 0.9500 34 1 2.8567 -6.0598 -0.0111 35 1 1.5322 -6.5028 1.1152 36 1 1.8749 -7.9169 -1.1883 37 1 0.2167 -7.4958 -0.6437 38 1 1.9794 -6.0460 -2.6947 39 1 0.2614 -6.5216 -2.8501 40 1 0.9428 -5.6149 -4.0434 41 1 0.1697 -5.9629 -6.3507 42 1 -1.7185 -4.6576 -7.2324 43 1 -3.4013 -3.7065 -7.9009 44 1 -5.3437 -1.9106 -8.0429 45 1 -2.0918 -2.6373 -3.4849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270200339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = 156.018923 kcal Electronic energy + Delta-G solvation = -29737.598432 eV Core-core repulsion = 25759.744327 eV Total energy + Delta-G solvation = -3977.854105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.57257 -40.58904 -39.04618 -37.12135 -35.03487 -34.35588 -32.18333 -31.61482 -31.27238 -30.83711 -29.98874 -28.51677 -25.35523 -24.51967 -24.32826 -23.11723 -22.42836 -21.72514 -21.38248 -20.96916 -19.49351 -18.43156 -17.15996 -16.71391 -16.64575 -16.49342 -16.21044 -15.65924 -15.38849 -14.84580 -14.47366 -14.22943 -14.05192 -13.98575 -13.53504 -13.44342 -13.25366 -13.18218 -12.96680 -12.73916 -12.20860 -12.12453 -11.97952 -11.63575 -11.54459 -11.27108 -11.16135 -11.00594 -10.85008 -10.68135 -10.53981 -10.35490 -9.80984 -9.66027 -9.41163 -9.26692 -8.89823 -8.84820 -8.63453 -8.30154 -6.60298 -5.76135 -2.72309 0.27658 0.74031 1.70939 2.02249 2.39699 2.93325 3.08423 3.64775 3.65535 3.70329 3.88103 4.08312 4.19353 4.36438 4.43758 4.53277 4.65225 4.70118 4.79528 4.83430 4.89742 4.92958 4.99025 5.11012 5.20432 5.26798 5.31183 5.39343 5.55736 5.63119 5.72311 5.81858 5.82693 5.86391 5.89094 5.96848 6.00031 6.00855 6.12601 6.21666 6.35728 6.45659 6.60807 6.74276 6.89113 7.74370 8.06073 8.30142 8.54434 9.16090 9.69374 10.52204 10.69365 11.74600 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.004174 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.959309 B = 6707.257607 C = 9428.470151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.041 4.041 3 Si 1.075 2.925 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.300 1.300 7 C -0.334 4.334 8 H 0.053 0.947 9 N -0.731 5.731 10 C 0.152 3.848 11 C 0.129 3.871 12 H 0.074 0.926 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.088 3.912 16 N -0.610 5.610 17 C 0.553 3.447 18 O -0.456 6.456 19 C -0.091 4.091 20 C -0.101 4.101 21 C -0.107 4.107 22 C -0.103 4.103 23 C 0.112 3.888 24 N -0.240 5.240 25 C -0.055 4.055 26 C -0.046 4.046 27 N -0.263 5.263 28 N -0.065 5.065 29 C -0.043 4.043 30 H 0.265 0.735 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.153 0.847 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.193 0.807 44 H 0.195 0.805 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 -21.442 -15.504 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.240 4.240 3 Si 0.907 3.093 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.228 1.228 7 C -0.465 4.465 8 H 0.071 0.929 9 N -0.384 5.384 10 C 0.023 3.977 11 C 0.026 3.974 12 H 0.092 0.908 13 C -0.162 4.162 14 C -0.172 4.172 15 C -0.034 4.034 16 N -0.346 5.346 17 C 0.339 3.661 18 O -0.326 6.326 19 C -0.094 4.094 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.124 4.124 23 C 0.021 3.979 24 N -0.028 5.028 25 C -0.202 4.202 26 C -0.202 4.202 27 N -0.129 5.129 28 N -0.044 5.044 29 C -0.064 4.064 30 H 0.076 0.924 31 H 0.224 0.776 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.170 0.830 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.210 0.790 44 H 0.212 0.788 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.082 -18.181 -13.956 23.014 hybrid contribution 0.258 -2.385 -1.279 2.719 sum -1.824 -20.566 -15.235 25.659 Atomic orbital electron populations 1.70722 1.05901 1.29366 1.52455 1.25554 0.97199 1.00350 1.00940 0.83335 0.74181 0.76319 0.75453 1.21160 1.22610 1.22774 1.19907 0.91318 0.86372 1.48911 0.92906 1.42807 1.06141 0.99722 1.89720 1.20894 0.93064 0.86235 0.97555 1.21954 0.97710 0.95824 0.81867 0.90794 1.22640 1.00694 0.93461 0.99444 1.22806 1.01855 0.97319 0.95192 1.22708 0.99780 0.84207 0.96751 1.48279 1.56634 1.16632 1.13103 1.17762 0.79582 0.83490 0.85272 1.90925 1.52834 1.23335 1.65498 1.19924 0.96749 0.97451 0.95323 1.22259 0.99723 0.96157 0.93793 1.20954 0.96223 0.99837 0.95542 1.21003 0.96509 0.95244 0.99597 1.17477 0.89807 0.96145 0.94482 1.44807 1.22474 1.23599 1.11903 1.23801 0.99391 1.06252 0.90798 1.23678 1.01119 0.96433 0.98925 1.75199 1.12881 1.21997 1.02865 1.78590 1.04475 1.00737 1.20581 1.21115 0.94923 0.97411 0.92917 0.92355 0.77560 0.96379 0.96511 0.90229 0.90014 0.89921 0.90599 0.91189 0.90041 0.82963 0.84021 0.84558 0.79003 0.78842 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -32.08 13.70 55.49 0.76 -31.32 16 2 C -0.04 -1.32 5.50 -17.43 -0.10 -1.42 16 3 Si 1.07 28.47 29.92 -169.99 -5.09 23.39 16 4 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 7 C -0.33 -10.38 9.99 -15.06 -0.15 -10.53 16 8 H 0.05 1.62 7.83 -52.49 -0.41 1.20 16 9 N -0.73 -20.41 4.13 -59.91 -0.25 -20.65 16 10 C 0.15 3.28 5.62 -4.04 -0.02 3.26 16 11 C 0.13 2.14 3.09 -66.95 -0.21 1.93 16 12 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 13 C -0.12 -1.36 6.45 -24.89 -0.16 -1.53 16 14 C -0.13 -1.10 7.09 -24.58 -0.17 -1.28 16 15 C 0.09 0.87 5.00 -2.53 -0.01 0.86 16 16 N -0.61 -9.46 3.06 -164.11 -0.50 -9.97 16 17 C 0.55 10.44 7.50 -12.33 -0.09 10.35 16 18 O -0.46 -11.38 12.38 5.32 0.07 -11.32 16 19 C -0.09 -1.36 5.76 -104.99 -0.61 -1.96 16 20 C -0.10 -1.04 8.00 -39.16 -0.31 -1.35 16 21 C -0.11 -0.83 10.02 -39.67 -0.40 -1.23 16 22 C -0.10 -0.90 9.45 -39.32 -0.37 -1.27 16 23 C 0.11 1.44 6.66 -83.62 -0.56 0.88 16 24 N -0.24 -3.29 3.56 -10.51 -0.04 -3.32 16 25 C -0.05 -0.53 10.91 -16.68 -0.18 -0.71 16 26 C -0.05 -0.50 12.05 -17.73 -0.21 -0.71 16 27 N -0.26 -4.18 12.40 30.24 0.37 -3.81 16 28 N -0.07 -1.13 12.42 60.35 0.75 -0.38 16 29 C -0.04 -0.68 9.16 -39.00 -0.36 -1.04 16 30 H 0.26 9.11 6.48 -40.82 -0.26 8.85 16 31 H 0.38 11.23 3.86 -40.82 -0.16 11.07 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 34 H 0.08 0.84 7.85 -51.93 -0.41 0.44 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.61 7.38 -51.93 -0.38 0.23 16 39 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 40 H 0.15 1.26 4.17 -52.49 -0.22 1.04 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.71 6.77 -52.49 -0.36 0.35 16 43 H 0.19 0.89 7.12 -52.49 -0.37 0.52 16 44 H 0.19 1.25 8.06 -52.48 -0.42 0.83 16 45 H 0.16 2.98 7.46 -52.48 -0.39 2.59 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -42.30 364.90 -7.78 -50.09 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.45 Total: 7.53 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.91 Total: -5.75 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: 1.10 Total: -69.44 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 28.47 SS G_CDS: -5.09 Total: 23.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -42.30 -7.78 -50.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270200339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.108 kcal (2) G-P(sol) polarization free energy of solvation -42.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds