Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99802 * 2 1 4 4 H 1.48505 * 109.47063 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47105 * 119.99456 * 3 2 1 6 6 H 1.48502 * 109.47051 * 239.99555 * 3 2 1 7 7 C 1.38811 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00337 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47393 * 187.49283 * 10 9 7 12 12 H 1.08996 * 109.87440 * 313.15396 * 11 10 9 13 13 C 1.54323 * 109.88046 * 192.13723 * 11 10 9 14 14 C 1.55168 * 102.93873 * 218.39054 * 13 11 10 15 15 C 1.54911 * 101.57913 * 35.50521 * 14 13 11 16 16 N 1.47027 * 109.87829 * 74.32881 * 11 10 9 17 17 C 1.34777 * 125.64899 * 298.31119 * 16 11 10 18 18 O 1.21552 * 119.99937 * 3.44384 * 17 16 11 19 19 C 1.47852 * 119.99825 * 183.44634 * 17 16 11 20 20 C 1.39621 * 120.11306 * 336.89447 * 19 17 16 21 21 C 1.37975 * 119.98410 * 179.97438 * 20 19 17 22 22 C 1.38272 * 120.21707 * 0.02562 * 21 20 19 23 23 C 1.38905 * 120.22594 * 359.97438 * 22 21 20 24 24 N 1.40271 * 119.99279 * 180.02562 * 23 22 21 25 25 C 1.36115 * 125.94323 * 4.99805 * 24 23 22 26 26 C 1.35366 * 106.05197 * 179.97438 * 25 24 23 27 27 N 1.33776 * 106.53974 * 0.02562 * 26 25 24 28 28 N 1.28608 * 109.05741 * 359.76961 * 27 26 25 29 29 C 1.38581 * 120.01223 * 359.74585 * 23 22 21 30 30 H 0.96998 * 119.99149 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99811 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47064 * 307.49856 * 10 9 7 33 33 H 1.09005 * 109.46876 * 67.49650 * 10 9 7 34 34 H 1.08996 * 110.72255 * 336.75285 * 13 11 10 35 35 H 1.08998 * 110.72223 * 100.03211 * 13 11 10 36 36 H 1.08998 * 110.99920 * 153.57315 * 14 13 11 37 37 H 1.09000 * 111.00402 * 277.38913 * 14 13 11 38 38 H 1.09000 * 110.36888 * 81.82966 * 15 14 13 39 39 H 1.09002 * 110.36070 * 204.04227 * 15 14 13 40 40 H 1.08001 * 120.00909 * 0.02562 * 20 19 17 41 41 H 1.08000 * 119.89581 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.88788 * 179.97438 * 22 21 20 43 43 H 1.07997 * 126.97029 * 359.94680 * 25 24 23 44 44 H 1.08003 * 126.73025 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.11153 * 180.25352 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6966 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0747 -4.8135 -0.1876 12 1 0.2209 -4.6859 0.4778 13 6 1.7779 -6.1542 0.1121 14 6 1.1839 -7.1054 -0.9603 15 6 1.0294 -6.1512 -2.1709 16 7 0.6207 -4.8615 -1.5852 17 6 -0.0575 -3.8881 -2.2246 18 8 -0.2887 -2.8368 -1.6599 19 6 -0.5204 -4.0990 -3.6129 20 6 0.1133 -5.0396 -4.4272 21 6 -0.3212 -5.2347 -5.7222 22 6 -1.3831 -4.5009 -6.2179 23 6 -2.0200 -3.5628 -5.4155 24 7 -3.0971 -2.8215 -5.9232 25 6 -3.6770 -2.9879 -7.1433 26 6 -4.6689 -2.0695 -7.2147 27 7 -4.6495 -1.3972 -6.0583 28 7 -3.7121 -1.8683 -5.3144 29 6 -1.5951 -3.3633 -4.1116 30 1 -0.4849 -0.8401 -0.0004 31 1 0.3558 -2.3880 0.0005 32 1 2.7816 -3.6586 -0.8148 33 1 2.5805 -3.7747 0.9500 34 1 2.8567 -6.0598 -0.0111 35 1 1.5322 -6.5028 1.1152 36 1 1.8749 -7.9169 -1.1883 37 1 0.2167 -7.4958 -0.6437 38 1 1.9794 -6.0460 -2.6947 39 1 0.2614 -6.5216 -2.8501 40 1 0.9428 -5.6149 -4.0434 41 1 0.1697 -5.9629 -6.3507 42 1 -1.7185 -4.6576 -7.2324 43 1 -3.4013 -3.7065 -7.9009 44 1 -5.3437 -1.9106 -8.0429 45 1 -2.0918 -2.6373 -3.4849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270200339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 123.258828 kcal Electronic energy + Delta-G solvation = -29739.019016 eV Core-core repulsion = 25759.744327 eV Total energy + Delta-G solvation = -3979.274689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.51409 -41.74094 -40.04839 -38.44205 -36.66001 -35.76591 -33.55994 -32.89280 -32.54395 -31.74478 -31.06658 -30.03065 -26.71768 -25.81915 -25.44716 -24.65113 -23.84397 -22.71224 -22.41747 -21.93367 -20.62734 -19.65037 -19.11123 -17.96709 -17.64184 -17.55992 -17.35768 -16.85073 -16.43603 -15.99350 -15.74763 -15.52324 -15.32449 -15.21274 -15.05694 -14.88925 -14.65446 -14.25203 -14.11046 -13.87164 -13.51734 -13.23453 -13.02468 -12.85745 -12.59934 -12.57854 -12.48779 -12.20880 -12.19746 -12.10201 -11.90859 -11.71803 -11.61905 -11.20285 -10.91449 -10.76501 -10.55247 -10.27105 -9.80162 -9.66293 -8.92106 -8.32193 -5.20045 -0.58210 -0.23289 0.86139 1.17218 1.46678 1.49478 1.60687 1.76873 1.80618 1.90137 2.59702 2.71924 3.23349 3.39528 3.46714 3.54244 3.60490 3.65082 3.72306 3.88377 3.94820 3.99186 4.15053 4.18942 4.19552 4.24422 4.27252 4.35150 4.53108 4.57584 4.66747 4.69562 4.73996 4.82886 4.94983 5.00983 5.02481 5.07374 5.12123 5.14330 5.21540 5.34711 5.38606 5.49632 5.56662 5.75802 6.50183 6.60280 7.09350 7.34238 7.40142 8.23919 8.33197 9.21327 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.004174 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.959309 B = 6707.257607 C = 9428.470151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.110 4.110 3 Si 1.128 2.872 4 H -0.295 1.295 5 H -0.270 1.270 6 H -0.282 1.282 7 C -0.335 4.335 8 H 0.056 0.944 9 N -0.748 5.748 10 C 0.148 3.852 11 C 0.129 3.871 12 H 0.043 0.957 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.076 3.924 16 N -0.607 5.607 17 C 0.537 3.463 18 O -0.541 6.541 19 C -0.117 4.117 20 C -0.089 4.089 21 C -0.081 4.081 22 C -0.077 4.077 23 C 0.095 3.905 24 N -0.246 5.246 25 C -0.028 4.028 26 C -0.054 4.054 27 N -0.307 5.307 28 N -0.145 5.145 29 C -0.081 4.081 30 H 0.245 0.755 31 H 0.373 0.627 32 H 0.013 0.987 33 H 0.022 0.978 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.180 0.820 41 H 0.204 0.796 42 H 0.191 0.809 43 H 0.256 0.744 44 H 0.235 0.765 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -26.463 -19.908 33.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.301 4.301 3 Si 0.952 3.048 4 H -0.221 1.221 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.467 4.467 8 H 0.074 0.926 9 N -0.400 5.400 10 C 0.020 3.980 11 C 0.025 3.975 12 H 0.061 0.939 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.044 4.044 16 N -0.342 5.342 17 C 0.326 3.674 18 O -0.417 6.417 19 C -0.121 4.121 20 C -0.107 4.107 21 C -0.099 4.099 22 C -0.097 4.097 23 C 0.004 3.996 24 N -0.034 5.034 25 C -0.176 4.176 26 C -0.211 4.211 27 N -0.172 5.172 28 N -0.122 5.122 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.213 0.787 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.197 0.803 41 H 0.221 0.779 42 H 0.208 0.792 43 H 0.272 0.728 44 H 0.251 0.749 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.526 -23.312 -18.338 29.665 hybrid contribution -0.518 -1.001 -0.033 1.128 sum 0.008 -24.313 -18.372 30.473 Atomic orbital electron populations 1.70843 1.07340 1.28272 1.55707 1.27226 0.97166 1.04650 1.01087 0.82678 0.73315 0.71651 0.77107 1.22104 1.19612 1.20874 1.20341 0.91616 0.87958 1.46826 0.92605 1.43111 1.06111 1.01144 1.89622 1.21121 0.93889 0.85853 0.97096 1.21916 0.95881 0.97101 0.82640 0.93873 1.22643 1.00724 0.90402 1.01462 1.22848 1.02965 0.97085 0.92645 1.23205 1.01582 0.81501 0.98154 1.48419 1.55026 1.18009 1.12731 1.18640 0.78858 0.83000 0.86880 1.90873 1.56273 1.26875 1.67674 1.19684 0.98048 1.00316 0.94018 1.22586 0.99409 0.94266 0.94436 1.21658 0.94692 0.99175 0.94336 1.21675 0.95034 0.92108 1.00900 1.17793 0.90408 0.97508 0.93843 1.45022 1.22456 1.22919 1.13010 1.24827 0.97279 1.05752 0.89720 1.24527 1.02184 0.95981 0.98395 1.75108 1.13379 1.23664 1.05050 1.78608 1.06852 1.03905 1.22823 1.20788 0.96676 0.98117 0.94615 0.94408 0.78726 0.96954 0.96032 0.89135 0.88635 0.85654 0.90157 0.88792 0.87389 0.80319 0.77939 0.79231 0.72823 0.74851 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -71.79 13.70 21.65 0.30 -71.49 16 2 C -0.11 -7.41 5.50 84.86 0.47 -6.95 16 3 Si 1.13 59.79 29.92 68.60 2.05 61.84 16 4 H -0.29 -15.93 7.11 99.48 0.71 -15.22 16 5 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 7 C -0.34 -22.02 9.99 84.03 0.84 -21.18 16 8 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 9 N -0.75 -45.04 4.13 -343.46 -1.42 -46.46 16 10 C 0.15 6.74 5.62 86.38 0.49 7.22 16 11 C 0.13 4.42 3.09 45.34 0.14 4.56 16 12 H 0.04 1.73 8.13 -2.39 -0.02 1.71 16 13 C -0.11 -2.26 6.45 31.79 0.21 -2.05 16 14 C -0.12 -1.43 7.09 31.99 0.23 -1.20 16 15 C 0.08 1.23 5.00 86.86 0.43 1.66 16 16 N -0.61 -19.33 3.06 -791.41 -2.43 -21.76 16 17 C 0.54 22.25 7.50 86.79 0.65 22.90 16 18 O -0.54 -30.71 12.38 -3.88 -0.05 -30.76 16 19 C -0.12 -3.69 5.76 -20.10 -0.12 -3.81 16 20 C -0.09 -1.53 8.00 22.54 0.18 -1.35 16 21 C -0.08 -0.73 10.02 22.22 0.22 -0.50 16 22 C -0.08 -0.93 9.45 22.44 0.21 -0.72 16 23 C 0.10 2.44 6.66 38.03 0.25 2.69 16 24 N -0.25 -6.84 3.56 -187.15 -0.67 -7.51 16 25 C -0.03 -0.45 10.91 83.37 0.91 0.46 16 26 C -0.05 -1.10 12.05 83.73 1.01 -0.09 16 27 N -0.31 -10.45 12.40 -58.24 -0.72 -11.17 16 28 N -0.14 -5.53 12.42 37.02 0.46 -5.07 16 29 C -0.08 -2.87 9.16 22.65 0.21 -2.66 16 30 H 0.25 18.69 6.48 -92.71 -0.60 18.09 16 31 H 0.37 24.23 3.86 -92.71 -0.36 23.88 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.02 0.97 8.10 -2.38 -0.02 0.95 16 34 H 0.09 1.64 7.85 -2.39 -0.02 1.62 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.13 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.15 7.38 -2.39 -0.02 1.13 16 39 H 0.11 1.22 5.93 -2.39 -0.01 1.20 16 40 H 0.18 2.03 4.17 -2.91 -0.01 2.02 16 41 H 0.20 -0.40 8.06 -2.91 -0.02 -0.43 16 42 H 0.19 0.29 6.77 -2.91 -0.02 0.27 16 43 H 0.26 0.50 7.12 -2.91 -0.02 0.48 16 44 H 0.24 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.10 4.50 7.46 -2.91 -0.02 4.47 16 Total: -1.00 -113.91 364.90 4.71 -109.20 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.85 Total: 24.21 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 6.33 Total: -1.03 kcal Atomic # 7 Polarization: -158.98 SS G_CDS: -4.48 Total: -163.46 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.05 Total: -30.76 kcal Atomic # 14 Polarization: 59.79 SS G_CDS: 2.05 Total: 61.84 kcal Total: -113.91 4.71 -109.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270200339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.458 kcal (2) G-P(sol) polarization free energy of solvation -113.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds