Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47073 * 96.44852 * 3 2 1 5 5 H 1.48497 * 109.47119 * 336.45113 * 3 2 1 6 6 H 1.48498 * 109.46953 * 216.44791 * 3 2 1 7 7 C 1.38808 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00010 * 17.74306 * 7 2 1 9 9 N 1.36932 * 119.99845 * 197.73617 * 7 2 1 10 10 C 1.46503 * 120.00050 * 173.92467 * 9 7 2 11 11 C 1.52995 * 109.47654 * 172.79452 * 10 9 7 12 12 H 1.09002 * 109.86823 * 43.49826 * 11 10 9 13 13 C 1.54318 * 109.88667 * 164.51442 * 11 10 9 14 14 C 1.55402 * 102.82960 * 141.51961 * 13 11 10 15 15 C 1.54907 * 101.66537 * 324.66417 * 14 13 11 16 16 N 1.47018 * 109.88300 * 282.48864 * 11 10 9 17 17 C 1.34774 * 125.65083 * 61.60098 * 16 11 10 18 18 O 1.21572 * 120.00260 * 5.74707 * 17 16 11 19 19 C 1.47695 * 120.00134 * 185.74807 * 17 16 11 20 20 C 1.39700 * 120.07609 * 22.97688 * 19 17 16 21 21 C 1.37736 * 119.91359 * 179.74202 * 20 19 17 22 22 C 1.39029 * 120.08357 * 0.53717 * 21 20 19 23 23 N 1.39935 * 119.92259 * 179.71653 * 22 21 20 24 24 C 1.36312 * 126.86607 * 0.02562 * 23 22 21 25 25 C 1.34956 * 106.78003 * 179.97438 * 24 23 22 26 26 N 1.33373 * 109.01789 * 0.02562 * 25 24 23 27 27 N 1.28764 * 109.92426 * 359.72547 * 26 25 24 28 28 C 1.39026 * 120.15841 * 359.73861 * 22 21 20 29 29 C 1.37744 * 120.08245 * 359.97438 * 28 22 21 30 30 H 0.97001 * 119.99948 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00242 * 353.92683 * 9 7 2 32 32 H 1.09001 * 109.47134 * 292.79728 * 10 9 7 33 33 H 1.09000 * 109.47284 * 52.79344 * 10 9 7 34 34 H 1.08999 * 110.72635 * 259.97693 * 13 11 10 35 35 H 1.08999 * 110.72135 * 23.24909 * 13 11 10 36 36 H 1.08996 * 111.03822 * 206.53113 * 14 13 11 37 37 H 1.08993 * 110.92499 * 82.75043 * 14 13 11 38 38 H 1.09000 * 110.37076 * 278.08586 * 15 14 13 39 39 H 1.08998 * 110.37119 * 155.76433 * 15 14 13 40 40 H 1.07997 * 120.03797 * 0.02562 * 20 19 17 41 41 H 1.08005 * 119.95737 * 180.27283 * 21 20 19 42 42 H 1.08005 * 126.60666 * 359.97438 * 24 23 22 43 43 H 1.08001 * 125.49176 * 179.97438 * 25 24 23 44 44 H 1.07995 * 119.96496 * 180.02562 * 28 22 21 45 45 H 1.07995 * 120.04728 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6339 1.9678 1.3912 5 1 1.3863 2.6882 -0.5594 6 1 3.4731 1.4833 -0.8318 7 6 2.0102 -1.2021 0.0005 8 1 1.5087 -2.1153 -0.2841 9 7 3.3307 -1.2302 0.3618 10 6 4.0276 -2.5123 0.4914 11 6 5.5186 -2.2611 0.7251 12 1 5.6498 -1.4567 1.4489 13 6 6.1929 -3.5487 1.2435 14 6 7.5686 -3.5329 0.5208 15 6 7.1946 -2.9182 -0.8510 16 7 6.1703 -1.9035 -0.5433 17 6 5.8790 -0.8268 -1.2999 18 8 5.0856 0.0019 -0.8979 19 6 6.5238 -0.6537 -2.6173 20 6 7.0352 -1.7617 -3.2974 21 6 7.6311 -1.5971 -4.5283 22 6 7.7339 -0.3290 -5.0889 23 7 8.3452 -0.1649 -6.3369 24 6 8.8832 -1.1432 -7.1189 25 6 9.3596 -0.5382 -8.2272 26 7 9.1279 0.7724 -8.1405 27 7 8.5221 1.0388 -7.0360 28 6 7.2311 0.7766 -4.4123 29 6 6.6287 0.6190 -3.1836 30 1 -0.4850 0.8401 0.0004 31 1 3.8047 -0.4012 0.5320 32 1 3.6158 -3.0661 1.3351 33 1 3.8957 -3.0916 -0.4225 34 1 6.3223 -3.5078 2.3250 35 1 5.6169 -4.4283 0.9561 36 1 7.9601 -4.5432 0.4025 37 1 8.2798 -2.9002 1.0516 38 1 6.7846 -3.6832 -1.5105 39 1 8.0668 -2.4504 -1.3077 40 1 6.9594 -2.7465 -2.8607 41 1 8.0228 -2.4538 -5.0567 42 1 8.9209 -2.1991 -6.8947 43 1 9.8502 -1.0351 -9.0511 44 1 7.3123 1.7602 -4.8508 45 1 6.2380 1.4781 -2.6587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270293133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = 144.390977 kcal Electronic energy + Delta-G solvation = -29417.979633 eV Core-core repulsion = 25439.621303 eV Total energy + Delta-G solvation = -3978.358331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.56326 -40.62183 -39.09196 -37.24859 -34.95432 -34.32879 -32.33249 -31.45005 -31.40895 -30.97115 -29.91573 -29.13389 -25.64231 -25.05548 -23.80894 -23.30078 -22.12037 -21.63655 -21.29047 -21.04194 -19.34898 -18.82319 -17.82338 -17.05921 -16.66285 -16.21426 -15.80773 -15.59715 -15.33898 -14.68721 -14.48560 -14.41623 -14.22283 -14.05791 -13.73868 -13.67064 -13.30336 -13.16931 -13.01575 -12.57938 -12.38754 -12.25951 -12.06551 -11.80509 -11.60141 -11.52783 -11.50470 -11.38685 -11.10737 -10.79803 -10.64353 -10.41025 -9.98422 -9.82204 -9.56563 -9.47568 -9.37523 -8.78639 -8.55054 -8.43955 -6.99192 -5.61525 -2.89402 -0.01444 0.90893 1.31858 1.72035 2.15381 2.83865 3.00173 3.57115 3.60933 3.69434 3.93160 3.96819 4.03871 4.29909 4.33436 4.39647 4.50121 4.59979 4.73996 4.75530 4.83739 4.86421 4.88624 5.05520 5.15053 5.18958 5.23345 5.33269 5.52964 5.56391 5.58623 5.61858 5.69765 5.72340 5.81715 5.84614 5.89247 6.02103 6.05845 6.12962 6.16256 6.25877 6.50029 6.65648 6.79082 7.63627 7.73058 8.16313 8.43014 8.59578 9.46961 10.19830 10.41579 11.55485 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.003363 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.702532 B = 8322.693557 C =10141.986526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.009 3.991 3 Si 0.855 3.145 4 H -0.293 1.293 5 H -0.302 1.302 6 H -0.232 1.232 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.152 3.848 11 C 0.126 3.874 12 H 0.076 0.924 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.093 3.907 16 N -0.611 5.611 17 C 0.560 3.440 18 O -0.480 6.480 19 C -0.110 4.110 20 C -0.079 4.079 21 C -0.134 4.134 22 C 0.150 3.850 23 N -0.316 5.316 24 C 0.022 3.978 25 C -0.074 4.074 26 N -0.233 5.233 27 N -0.060 5.060 28 C -0.113 4.113 29 C -0.040 4.040 30 H 0.256 0.744 31 H 0.373 0.627 32 H 0.030 0.970 33 H 0.026 0.974 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.153 0.847 41 H 0.137 0.863 42 H 0.197 0.803 43 H 0.191 0.809 44 H 0.146 0.854 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.229 -10.286 -8.601 28.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.187 4.187 3 Si 0.684 3.316 4 H -0.220 1.220 5 H -0.229 1.229 6 H -0.155 1.155 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.023 3.977 12 H 0.094 0.906 13 C -0.162 4.162 14 C -0.172 4.172 15 C -0.030 4.030 16 N -0.347 5.347 17 C 0.348 3.652 18 O -0.352 6.352 19 C -0.113 4.113 20 C -0.097 4.097 21 C -0.155 4.155 22 C 0.057 3.943 23 N -0.097 5.097 24 C -0.128 4.128 25 C -0.229 4.229 26 N -0.103 5.103 27 N -0.038 5.038 28 C -0.133 4.133 29 C -0.060 4.060 30 H 0.065 0.935 31 H 0.211 0.789 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.170 0.830 41 H 0.155 0.845 42 H 0.213 0.787 43 H 0.208 0.792 44 H 0.163 0.837 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 24.348 -8.269 -8.529 27.091 hybrid contribution 0.509 -0.110 -0.136 0.539 sum 24.857 -8.379 -8.664 27.625 Atomic orbital electron populations 1.69845 1.05477 1.25828 1.56833 1.24550 0.94923 0.97551 1.01712 0.86943 0.81525 0.84398 0.78700 1.21997 1.22919 1.15523 1.18901 0.84576 0.95291 1.38392 0.90191 1.42841 1.10025 1.02324 1.84045 1.20974 0.87966 0.90280 0.98459 1.21979 0.94040 0.96713 0.84928 0.90564 1.22684 0.95379 0.97418 1.00736 1.22839 0.97618 1.01404 0.95317 1.22603 0.91398 0.91203 0.97763 1.48354 1.38049 1.24495 1.23823 1.17856 0.82212 0.81338 0.83808 1.90960 1.32154 1.40873 1.71230 1.20196 1.00670 0.94312 0.96169 1.21742 0.94697 0.99828 0.93480 1.20763 1.03233 0.94677 0.96820 1.17750 0.98180 0.95473 0.82857 1.48049 1.39548 1.07676 1.14449 1.23593 0.99450 0.97048 0.92674 1.23277 1.08721 0.89972 1.00890 1.74366 1.09236 1.15553 1.11105 1.82175 1.18561 1.02421 1.00678 1.20900 0.98973 0.98440 0.94957 1.21250 0.93857 0.97399 0.93452 0.93459 0.78936 0.95292 0.95605 0.89857 0.90055 0.89856 0.90626 0.91164 0.90455 0.83022 0.84538 0.78652 0.79228 0.83654 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -31.02 13.97 55.49 0.78 -30.24 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.86 23.76 27.26 -169.99 -4.63 19.12 16 4 H -0.29 -8.12 7.11 56.52 0.40 -7.72 16 5 H -0.30 -8.52 7.11 56.52 0.40 -8.12 16 6 H -0.23 -6.22 5.03 56.52 0.28 -5.93 16 7 C -0.24 -7.29 10.40 -15.06 -0.16 -7.45 16 8 H 0.08 2.56 8.06 -52.48 -0.42 2.13 16 9 N -0.74 -18.88 4.21 -59.91 -0.25 -19.14 16 10 C 0.15 2.97 5.61 -4.04 -0.02 2.95 16 11 C 0.13 1.86 3.01 -66.96 -0.20 1.66 16 12 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 13 C -0.12 -1.19 6.45 -24.77 -0.16 -1.35 16 14 C -0.13 -0.96 7.09 -24.45 -0.17 -1.13 16 15 C 0.09 0.79 4.97 -2.53 -0.01 0.78 16 16 N -0.61 -8.39 3.06 -164.18 -0.50 -8.90 16 17 C 0.56 9.32 7.39 -12.40 -0.09 9.23 16 18 O -0.48 -10.39 11.01 5.30 0.06 -10.33 16 19 C -0.11 -1.45 5.70 -104.94 -0.60 -2.05 16 20 C -0.08 -0.76 8.07 -39.22 -0.32 -1.07 16 21 C -0.13 -1.10 9.46 -39.47 -0.37 -1.47 16 22 C 0.15 1.56 6.70 -83.57 -0.56 1.00 16 23 N -0.32 -3.31 3.85 -10.50 -0.04 -3.35 16 24 C 0.02 0.16 10.92 -16.73 -0.18 -0.02 16 25 C -0.07 -0.58 11.86 -18.05 -0.21 -0.80 16 26 N -0.23 -2.79 12.33 30.09 0.37 -2.42 16 27 N -0.06 -0.78 13.15 60.35 0.79 0.01 16 28 C -0.11 -1.31 9.66 -39.47 -0.38 -1.69 16 29 C -0.04 -0.52 9.58 -39.22 -0.38 -0.90 16 30 H 0.26 8.16 8.31 -40.82 -0.34 7.82 16 31 H 0.37 9.63 3.76 -40.82 -0.15 9.48 16 32 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.51 6.85 -51.93 -0.36 0.15 16 39 H 0.08 0.54 6.75 -51.93 -0.35 0.19 16 40 H 0.15 1.14 4.44 -52.49 -0.23 0.91 16 41 H 0.14 0.63 6.82 -52.48 -0.36 0.27 16 42 H 0.20 0.48 7.16 -52.48 -0.38 0.11 16 43 H 0.19 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.15 1.63 7.72 -52.49 -0.41 1.22 16 45 H 0.15 2.03 7.82 -52.49 -0.41 1.62 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -40.08 362.74 -7.56 -47.64 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.68 Total: 4.28 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.92 Total: -2.14 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: 1.14 Total: -64.03 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.06 Total: -10.33 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.63 Total: 19.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -40.08 -7.56 -47.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270293133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.031 kcal (2) G-P(sol) polarization free energy of solvation -40.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds