Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47073 * 96.44852 * 3 2 1 5 5 H 1.48497 * 109.47119 * 336.45113 * 3 2 1 6 6 H 1.48498 * 109.46953 * 216.44791 * 3 2 1 7 7 C 1.38808 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00010 * 17.74306 * 7 2 1 9 9 N 1.36932 * 119.99845 * 197.73617 * 7 2 1 10 10 C 1.46503 * 120.00050 * 173.92467 * 9 7 2 11 11 C 1.52995 * 109.47654 * 172.79452 * 10 9 7 12 12 H 1.09002 * 109.86823 * 43.49826 * 11 10 9 13 13 C 1.54318 * 109.88667 * 164.51442 * 11 10 9 14 14 C 1.55402 * 102.82960 * 141.51961 * 13 11 10 15 15 C 1.54907 * 101.66537 * 324.66417 * 14 13 11 16 16 N 1.47018 * 109.88300 * 282.48864 * 11 10 9 17 17 C 1.34774 * 125.65083 * 61.60098 * 16 11 10 18 18 O 1.21572 * 120.00260 * 5.74707 * 17 16 11 19 19 C 1.47695 * 120.00134 * 185.74807 * 17 16 11 20 20 C 1.39700 * 120.07609 * 22.97688 * 19 17 16 21 21 C 1.37736 * 119.91359 * 179.74202 * 20 19 17 22 22 C 1.39029 * 120.08357 * 0.53717 * 21 20 19 23 23 N 1.39935 * 119.92259 * 179.71653 * 22 21 20 24 24 C 1.36312 * 126.86607 * 0.02562 * 23 22 21 25 25 C 1.34956 * 106.78003 * 179.97438 * 24 23 22 26 26 N 1.33373 * 109.01789 * 0.02562 * 25 24 23 27 27 N 1.28764 * 109.92426 * 359.72547 * 26 25 24 28 28 C 1.39026 * 120.15841 * 359.73861 * 22 21 20 29 29 C 1.37744 * 120.08245 * 359.97438 * 28 22 21 30 30 H 0.97001 * 119.99948 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00242 * 353.92683 * 9 7 2 32 32 H 1.09001 * 109.47134 * 292.79728 * 10 9 7 33 33 H 1.09000 * 109.47284 * 52.79344 * 10 9 7 34 34 H 1.08999 * 110.72635 * 259.97693 * 13 11 10 35 35 H 1.08999 * 110.72135 * 23.24909 * 13 11 10 36 36 H 1.08996 * 111.03822 * 206.53113 * 14 13 11 37 37 H 1.08993 * 110.92499 * 82.75043 * 14 13 11 38 38 H 1.09000 * 110.37076 * 278.08586 * 15 14 13 39 39 H 1.08998 * 110.37119 * 155.76433 * 15 14 13 40 40 H 1.07997 * 120.03797 * 0.02562 * 20 19 17 41 41 H 1.08005 * 119.95737 * 180.27283 * 21 20 19 42 42 H 1.08005 * 126.60666 * 359.97438 * 24 23 22 43 43 H 1.08001 * 125.49176 * 179.97438 * 25 24 23 44 44 H 1.07995 * 119.96496 * 180.02562 * 28 22 21 45 45 H 1.07995 * 120.04728 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6339 1.9678 1.3912 5 1 1.3863 2.6882 -0.5594 6 1 3.4731 1.4833 -0.8318 7 6 2.0102 -1.2021 0.0005 8 1 1.5087 -2.1153 -0.2841 9 7 3.3307 -1.2302 0.3618 10 6 4.0276 -2.5123 0.4914 11 6 5.5186 -2.2611 0.7251 12 1 5.6498 -1.4567 1.4489 13 6 6.1929 -3.5487 1.2435 14 6 7.5686 -3.5329 0.5208 15 6 7.1946 -2.9182 -0.8510 16 7 6.1703 -1.9035 -0.5433 17 6 5.8790 -0.8268 -1.2999 18 8 5.0856 0.0019 -0.8979 19 6 6.5238 -0.6537 -2.6173 20 6 7.0352 -1.7617 -3.2974 21 6 7.6311 -1.5971 -4.5283 22 6 7.7339 -0.3290 -5.0889 23 7 8.3452 -0.1649 -6.3369 24 6 8.8832 -1.1432 -7.1189 25 6 9.3596 -0.5382 -8.2272 26 7 9.1279 0.7724 -8.1405 27 7 8.5221 1.0388 -7.0360 28 6 7.2311 0.7766 -4.4123 29 6 6.6287 0.6190 -3.1836 30 1 -0.4850 0.8401 0.0004 31 1 3.8047 -0.4012 0.5320 32 1 3.6158 -3.0661 1.3351 33 1 3.8957 -3.0916 -0.4225 34 1 6.3223 -3.5078 2.3250 35 1 5.6169 -4.4283 0.9561 36 1 7.9601 -4.5432 0.4025 37 1 8.2798 -2.9002 1.0516 38 1 6.7846 -3.6832 -1.5105 39 1 8.0668 -2.4504 -1.3077 40 1 6.9594 -2.7465 -2.8607 41 1 8.0228 -2.4538 -5.0567 42 1 8.9209 -2.1991 -6.8947 43 1 9.8502 -1.0351 -9.0511 44 1 7.3123 1.7602 -4.8508 45 1 6.2380 1.4781 -2.6587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270293133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = 115.008839 kcal Electronic energy + Delta-G solvation = -29419.253739 eV Core-core repulsion = 25439.621303 eV Total energy + Delta-G solvation = -3979.632436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.24846 -41.63388 -39.98380 -38.37817 -36.49166 -35.53983 -33.70199 -33.03784 -32.25001 -31.67892 -30.95994 -30.34978 -26.88984 -26.19779 -24.60884 -24.45466 -23.51483 -22.47210 -22.33118 -21.84394 -20.51489 -19.67694 -19.54257 -18.31063 -17.65502 -16.97048 -16.91718 -16.52579 -16.27781 -16.19051 -15.72583 -15.45136 -15.24135 -15.08954 -14.81047 -14.68931 -14.44065 -14.23092 -14.11184 -13.90117 -13.80475 -13.51664 -13.34846 -12.97507 -12.87774 -12.74103 -12.33514 -12.26424 -12.17971 -12.09440 -11.97173 -11.76788 -11.72260 -11.48551 -10.87173 -10.81761 -10.46354 -10.26819 -9.71704 -9.52618 -9.16435 -8.05757 -5.27798 -0.80983 0.11697 0.54614 1.05180 1.33834 1.38178 1.53981 1.71223 1.83328 1.97617 2.54533 2.63154 3.22849 3.25701 3.41982 3.51768 3.58887 3.69890 3.73994 3.85204 3.99782 4.04261 4.12497 4.19273 4.22555 4.28082 4.34768 4.38621 4.48281 4.61546 4.74879 4.78717 4.81605 4.87811 4.91489 5.03371 5.06745 5.13302 5.15017 5.21133 5.23351 5.36188 5.43513 5.55205 5.74965 5.78583 6.19881 6.57142 7.04510 7.10461 7.28312 7.99081 8.17264 9.14488 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.003363 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.702532 B = 8322.693557 C =10141.986526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.056 4.056 3 Si 0.920 3.080 4 H -0.292 1.292 5 H -0.309 1.309 6 H -0.223 1.223 7 C -0.222 4.222 8 H 0.054 0.946 9 N -0.749 5.749 10 C 0.146 3.854 11 C 0.128 3.872 12 H 0.055 0.945 13 C -0.115 4.115 14 C -0.120 4.120 15 C 0.082 3.918 16 N -0.610 5.610 17 C 0.549 3.451 18 O -0.548 6.548 19 C -0.131 4.131 20 C -0.064 4.064 21 C -0.111 4.111 22 C 0.149 3.851 23 N -0.325 5.325 24 C 0.043 3.957 25 C -0.080 4.080 26 N -0.265 5.265 27 N -0.118 5.118 28 C -0.124 4.124 29 C -0.058 4.058 30 H 0.254 0.746 31 H 0.372 0.628 32 H 0.034 0.966 33 H 0.022 0.978 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.182 0.818 41 H 0.191 0.809 42 H 0.252 0.748 43 H 0.227 0.773 44 H 0.136 0.864 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.336 -14.455 -9.747 34.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.248 4.248 3 Si 0.749 3.251 4 H -0.219 1.219 5 H -0.237 1.237 6 H -0.146 1.146 7 C -0.353 4.353 8 H 0.072 0.928 9 N -0.398 5.398 10 C 0.019 3.981 11 C 0.024 3.976 12 H 0.073 0.927 13 C -0.154 4.154 14 C -0.157 4.157 15 C -0.039 4.039 16 N -0.343 5.343 17 C 0.339 3.661 18 O -0.426 6.426 19 C -0.135 4.135 20 C -0.083 4.083 21 C -0.131 4.131 22 C 0.057 3.943 23 N -0.107 5.107 24 C -0.106 4.106 25 C -0.236 4.236 26 N -0.133 5.133 27 N -0.094 5.094 28 C -0.144 4.144 29 C -0.077 4.077 30 H 0.062 0.938 31 H 0.210 0.790 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.198 0.802 41 H 0.208 0.792 42 H 0.268 0.732 43 H 0.243 0.757 44 H 0.154 0.846 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 28.548 -12.483 -9.675 32.625 hybrid contribution -0.671 0.976 0.142 1.193 sum 27.877 -11.507 -9.533 31.630 Atomic orbital electron populations 1.69966 1.06926 1.26279 1.59720 1.25213 0.95646 1.00663 1.03266 0.85942 0.80250 0.80321 0.78619 1.21920 1.23695 1.14616 1.18971 0.86489 0.93985 1.35863 0.92823 1.42992 1.08599 1.04717 1.83465 1.21246 0.91165 0.87621 0.98117 1.21922 0.91359 0.98901 0.85429 0.92684 1.22690 0.96592 0.94415 1.01689 1.22866 0.95826 1.03449 0.93580 1.23059 0.90805 0.90530 0.99513 1.48478 1.38432 1.24547 1.22888 1.18468 0.81550 0.81125 0.84930 1.90874 1.35424 1.43414 1.72907 1.20057 1.02570 0.95524 0.95357 1.22017 0.93186 0.99539 0.93518 1.21244 1.01069 0.94993 0.95832 1.17947 0.97548 0.95948 0.82904 1.48163 1.39818 1.08154 1.14529 1.24572 0.96414 0.98574 0.91062 1.24047 1.08418 0.88732 1.02376 1.74336 1.09713 1.18057 1.11228 1.82192 1.21228 1.04137 1.01876 1.20803 0.99767 0.99130 0.94733 1.21073 0.95216 0.97217 0.94221 0.93787 0.79036 0.94850 0.95949 0.88618 0.89111 0.86160 0.90302 0.88657 0.88259 0.80155 0.79236 0.73214 0.75702 0.84647 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -67.58 13.97 21.65 0.30 -67.27 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 3 Si 0.92 52.06 27.26 68.60 1.87 53.93 16 4 H -0.29 -16.25 7.11 99.48 0.71 -15.54 16 5 H -0.31 -17.63 7.11 99.48 0.71 -16.92 16 6 H -0.22 -12.30 5.03 99.48 0.50 -11.80 16 7 C -0.22 -13.83 10.40 84.03 0.87 -12.95 16 8 H 0.05 3.57 8.06 -2.91 -0.02 3.54 16 9 N -0.75 -38.99 4.21 -343.46 -1.45 -40.44 16 10 C 0.15 5.68 5.61 86.38 0.48 6.17 16 11 C 0.13 3.59 3.01 45.34 0.14 3.73 16 12 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 13 C -0.12 -1.81 6.45 31.87 0.21 -1.60 16 14 C -0.12 -1.06 7.09 32.07 0.23 -0.84 16 15 C 0.08 0.99 4.97 86.85 0.43 1.42 16 16 N -0.61 -15.61 3.06 -791.62 -2.43 -18.04 16 17 C 0.55 18.33 7.39 86.74 0.64 18.97 16 18 O -0.55 -24.75 11.01 -3.94 -0.04 -24.79 16 19 C -0.13 -3.38 5.70 -20.07 -0.11 -3.49 16 20 C -0.06 -0.97 8.07 22.50 0.18 -0.79 16 21 C -0.11 -1.24 9.46 22.34 0.21 -1.03 16 22 C 0.15 2.75 6.70 38.23 0.26 3.01 16 23 N -0.32 -5.98 3.85 -187.13 -0.72 -6.70 16 24 C 0.04 0.40 10.92 83.24 0.91 1.31 16 25 C -0.08 -1.00 11.86 83.70 0.99 0.00 16 26 N -0.27 -6.11 12.33 -58.72 -0.72 -6.84 16 27 N -0.12 -3.02 13.15 37.02 0.49 -2.54 16 28 C -0.12 -2.96 9.66 22.34 0.22 -2.74 16 29 C -0.06 -1.58 9.58 22.51 0.22 -1.37 16 30 H 0.25 16.82 8.31 -92.71 -0.77 16.05 16 31 H 0.37 19.78 3.76 -92.71 -0.35 19.43 16 32 H 0.03 1.29 8.06 -2.39 -0.02 1.27 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.29 7.85 -2.39 -0.02 1.28 16 36 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.75 6.85 -2.39 -0.02 0.74 16 39 H 0.10 0.84 6.75 -2.39 -0.02 0.82 16 40 H 0.18 1.63 4.44 -2.91 -0.01 1.61 16 41 H 0.19 0.11 6.82 -2.91 -0.02 0.09 16 42 H 0.25 -0.81 7.16 -2.91 -0.02 -0.83 16 43 H 0.23 0.84 8.06 -2.91 -0.02 0.81 16 44 H 0.14 3.37 7.72 -2.91 -0.02 3.34 16 45 H 0.12 3.86 7.82 -2.91 -0.02 3.83 16 Total: -1.00 -97.57 362.74 4.12 -93.45 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.48 Total: 12.64 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 6.33 Total: 6.60 kcal Atomic # 7 Polarization: -137.30 SS G_CDS: -4.53 Total: -141.83 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.04 Total: -24.79 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 1.87 Total: 53.93 kcal Total: -97.57 4.12 -93.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270293133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.461 kcal (2) G-P(sol) polarization free energy of solvation -97.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds