Wall clock time and date at job start Sat Apr 11 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 120.00092 * 2 1 4 4 H 1.48495 * 109.46905 * 267.64623 * 3 2 1 5 5 H 1.48504 * 109.46681 * 27.64555 * 3 2 1 6 6 H 1.48502 * 109.46960 * 147.64525 * 3 2 1 7 7 C 1.38813 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00239 * 0.17236 * 7 2 1 9 9 N 1.36939 * 119.99784 * 180.16376 * 7 2 1 10 10 C 1.46501 * 119.99674 * 172.10334 * 9 7 2 11 11 C 1.53005 * 109.46779 * 184.30606 * 10 9 7 12 12 H 1.09000 * 110.00071 * 54.69171 * 11 10 9 13 13 C 1.54326 * 109.88052 * 293.59419 * 11 10 9 14 14 C 1.55163 * 102.94219 * 218.39195 * 13 11 10 15 15 C 1.54691 * 101.67655 * 35.33783 * 14 13 11 16 16 N 1.47022 * 109.88160 * 175.79080 * 11 10 9 17 17 C 1.34783 * 125.64653 * 298.31528 * 16 11 10 18 18 O 1.21562 * 119.99784 * 354.92243 * 17 16 11 19 19 C 1.47758 * 120.00091 * 174.91457 * 17 16 11 20 20 C 1.40593 * 126.04733 * 180.02562 * 19 17 16 21 21 N 1.31246 * 106.63263 * 180.02562 * 20 19 17 22 22 N 1.40114 * 107.16981 * 359.97438 * 21 20 19 23 23 C 1.40143 * 125.56365 * 180.02562 * 22 21 20 24 24 C 1.38860 * 120.06913 * 179.70155 * 23 22 21 25 25 C 1.38114 * 119.93381 * 179.81237 * 24 23 22 26 26 C 1.38288 * 120.06349 * 0.43931 * 25 24 23 27 27 C 1.38280 * 120.14191 * 359.79054 * 26 25 24 28 28 C 1.38116 * 120.06809 * 359.97438 * 27 26 25 29 29 N 1.28701 * 108.86946 * 0.02562 * 22 21 20 30 30 H 0.97000 * 120.00041 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00427 * 352.10449 * 9 7 2 32 32 H 1.08993 * 109.47237 * 64.30713 * 10 9 7 33 33 H 1.08995 * 109.47051 * 304.30382 * 10 9 7 34 34 H 1.08996 * 110.72306 * 336.75621 * 13 11 10 35 35 H 1.08998 * 110.71728 * 100.03076 * 13 11 10 36 36 H 1.08998 * 111.00452 * 153.57832 * 14 13 11 37 37 H 1.09004 * 111.00149 * 277.42729 * 14 13 11 38 38 H 1.08999 * 110.38704 * 204.36585 * 15 14 13 39 39 H 1.08997 * 110.23573 * 82.10898 * 15 14 13 40 40 H 1.08005 * 126.68309 * 0.04242 * 20 19 17 41 41 H 1.08002 * 120.03050 * 0.02562 * 24 23 22 42 42 H 1.07993 * 119.96876 * 180.20856 * 25 24 23 43 43 H 1.08004 * 119.92763 * 179.76717 * 26 25 24 44 44 H 1.07994 * 119.96943 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.03758 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5475 2.0176 -1.3989 5 1 1.4236 2.6665 0.6497 6 1 3.5220 1.4550 0.7493 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1374 -0.0019 9 7 3.3796 -1.2022 0.0039 10 6 4.1116 -2.4591 0.1788 11 6 5.6122 -2.1693 0.2520 12 1 5.8129 -1.4378 1.0347 13 6 6.1102 -1.6339 -1.1071 14 6 7.5032 -2.3013 -1.2542 15 6 7.2600 -3.6813 -0.5989 16 7 6.3484 -3.4116 0.5279 17 6 6.2162 -4.1745 1.6311 18 8 5.5037 -3.8047 2.5440 19 6 6.9371 -5.4605 1.7309 20 6 6.8914 -6.3525 2.8167 21 7 7.6682 -7.3635 2.5053 22 7 8.1947 -7.1039 1.2330 23 6 9.0746 -7.9375 0.5294 24 6 9.5222 -7.5696 -0.7325 25 6 10.3923 -8.3914 -1.4218 26 6 10.8105 -9.5840 -0.8602 27 6 10.3628 -9.9554 0.3942 28 6 9.4964 -9.1356 1.0906 29 7 7.7385 -5.9750 0.8161 30 1 -0.4850 0.8400 0.0004 31 1 3.8649 -0.3700 -0.1094 32 1 3.9095 -3.1178 -0.6657 33 1 3.7894 -2.9418 1.1014 34 1 5.4455 -1.9473 -1.9121 35 1 6.2033 -0.5482 -1.0831 36 1 7.7764 -2.4080 -2.3040 37 1 8.2638 -1.7422 -0.7090 38 1 8.1986 -4.0999 -0.2358 39 1 6.7915 -4.3598 -1.3118 40 1 6.3267 -6.2298 3.7291 41 1 9.1930 -6.6401 -1.1730 42 1 10.7435 -8.1042 -2.4018 43 1 11.4880 -10.2267 -1.4028 44 1 10.6908 -10.8875 0.8299 45 1 9.1467 -9.4264 2.0701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277997740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:23 Heat of formation + Delta-G solvation = 136.018496 kcal Electronic energy + Delta-G solvation = -28824.434389 eV Core-core repulsion = 24845.713000 eV Total energy + Delta-G solvation = -3978.721389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.99839 -40.06793 -39.54903 -37.46864 -34.70562 -34.22801 -32.97724 -31.71917 -31.48544 -31.30832 -29.92764 -29.02470 -25.66291 -25.04579 -24.09911 -23.19843 -22.03416 -21.94472 -21.68708 -20.70323 -19.38584 -18.60239 -17.64472 -17.00002 -16.83915 -16.71770 -16.31285 -15.68577 -15.31827 -14.88791 -14.49347 -14.42990 -14.29851 -14.02335 -13.95717 -13.63547 -13.35092 -13.09047 -12.99623 -12.63894 -12.48365 -12.36211 -12.04615 -11.90938 -11.71432 -11.46817 -11.20320 -11.11573 -10.96139 -10.89326 -10.69469 -10.52649 -10.49775 -10.19481 -10.03390 -9.58956 -9.55284 -8.80937 -8.77553 -8.52779 -7.17312 -5.71738 -3.08072 0.11094 0.76257 1.37483 1.53234 1.61634 2.85128 3.14749 3.24425 3.38145 3.40370 3.44637 3.48849 4.25437 4.31913 4.41229 4.53761 4.56124 4.59402 4.63895 4.77519 4.84771 4.90671 4.94778 5.08398 5.26379 5.30064 5.39838 5.41604 5.54577 5.57900 5.59513 5.65861 5.76178 5.76361 5.82155 5.86391 5.92400 5.95327 6.00629 6.06883 6.27416 6.37170 6.49602 6.72740 6.88189 7.38651 7.52199 8.04494 8.12105 8.46868 9.25830 9.97349 10.17718 11.46645 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002380 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.590840 B =11763.261026 C =12441.745678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.089 0.911 9 N -0.749 5.749 10 C 0.150 3.850 11 C 0.128 3.872 12 H 0.080 0.920 13 C -0.125 4.125 14 C -0.135 4.135 15 C 0.104 3.896 16 N -0.597 5.597 17 C 0.615 3.385 18 O -0.513 6.513 19 C -0.041 4.041 20 C 0.083 3.917 21 N -0.279 5.279 22 N -0.166 5.166 23 C 0.157 3.843 24 C -0.112 4.112 25 C -0.099 4.099 26 C -0.118 4.118 27 C -0.100 4.100 28 C -0.108 4.108 29 N -0.199 5.199 30 H 0.259 0.741 31 H 0.359 0.641 32 H 0.025 0.975 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.221 0.779 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.558 -18.778 -2.620 33.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.395 5.395 10 C 0.022 3.978 11 C 0.025 3.975 12 H 0.099 0.901 13 C -0.163 4.163 14 C -0.173 4.173 15 C -0.019 4.019 16 N -0.330 5.330 17 C 0.400 3.600 18 O -0.386 6.386 19 C -0.208 4.208 20 C -0.108 4.108 21 N -0.106 5.106 22 N -0.058 5.058 23 C 0.066 3.934 24 C -0.133 4.133 25 C -0.117 4.117 26 C -0.137 4.137 27 C -0.119 4.119 28 C -0.129 4.129 29 N -0.044 5.044 30 H 0.069 0.931 31 H 0.191 0.809 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.237 0.763 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 27.717 -19.523 -2.602 34.002 hybrid contribution -0.133 1.731 0.450 1.794 sum 27.583 -17.792 -2.152 32.894 Atomic orbital electron populations 1.69705 1.05108 1.25790 1.57577 1.24707 0.95250 0.97201 1.01968 0.86575 0.79496 0.84969 0.77727 1.21047 1.21727 1.20129 1.19025 0.80396 0.94725 1.42886 0.89303 1.42485 1.04007 1.03558 1.89461 1.20933 0.87556 0.89898 0.99402 1.21926 0.93302 0.84861 0.97404 0.90147 1.22736 0.95902 1.00963 0.96748 1.22787 0.97833 0.95434 1.01231 1.22387 0.93778 0.97470 0.88244 1.48239 1.41038 1.25128 1.18634 1.16250 0.80944 0.81010 0.81821 1.90892 1.39035 1.71101 1.37548 1.23043 1.03930 1.00306 0.93537 1.25195 0.96062 0.89348 1.00236 1.78034 1.13579 1.22979 0.96052 1.48334 1.33507 1.12535 1.11388 1.17407 0.93140 0.90745 0.92106 1.20998 0.98335 1.01559 0.92369 1.21083 0.96520 0.94008 1.00125 1.21356 0.99895 0.96803 0.95623 1.21077 0.96561 0.99535 0.94714 1.20955 0.98344 0.92243 1.01390 1.73862 1.08953 0.97101 1.24452 0.93086 0.80869 0.95699 0.93734 0.89520 0.89951 0.89759 0.90827 0.89912 0.91137 0.76297 0.84091 0.84550 0.85086 0.84652 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.01 13.97 55.49 0.78 -29.24 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.41 27.60 -169.99 -4.69 17.72 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -6.63 6.73 56.52 0.38 -6.25 16 7 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 9 N -0.75 -18.45 5.22 -59.91 -0.31 -18.76 16 10 C 0.15 3.16 5.65 -4.04 -0.02 3.14 16 11 C 0.13 2.12 2.93 -66.95 -0.20 1.92 16 12 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.13 -1.66 6.07 -24.89 -0.15 -1.81 16 14 C -0.13 -1.33 7.07 -24.70 -0.17 -1.51 16 15 C 0.10 1.17 5.95 -2.65 -0.02 1.15 16 16 N -0.60 -8.86 3.07 -164.28 -0.50 -9.36 16 17 C 0.62 9.87 7.58 -12.37 -0.09 9.78 16 18 O -0.51 -9.89 16.08 5.31 0.09 -9.81 16 19 C -0.04 -0.56 6.93 -82.99 -0.57 -1.13 16 20 C 0.08 0.99 11.91 -16.91 -0.20 0.78 16 21 N -0.28 -3.36 11.90 30.85 0.37 -2.99 16 22 N -0.17 -1.96 4.44 32.49 0.14 -1.81 16 23 C 0.16 1.51 6.74 -83.60 -0.56 0.95 16 24 C -0.11 -0.87 9.61 -39.40 -0.38 -1.24 16 25 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 26 C -0.12 -0.57 10.04 -39.55 -0.40 -0.97 16 27 C -0.10 -0.55 10.04 -39.61 -0.40 -0.95 16 28 C -0.11 -0.85 9.65 -39.40 -0.38 -1.23 16 29 N -0.20 -2.47 8.50 33.29 0.28 -2.18 16 30 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 31 H 0.36 8.41 5.47 -40.82 -0.22 8.18 16 32 H 0.03 0.53 8.04 -51.93 -0.42 0.11 16 33 H 0.04 1.05 6.91 -51.93 -0.36 0.70 16 34 H 0.09 1.21 7.78 -51.93 -0.40 0.81 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.86 6.52 -51.93 -0.34 0.52 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.22 2.02 8.06 -52.48 -0.42 1.60 16 41 H 0.14 1.04 7.67 -52.49 -0.40 0.64 16 42 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.13 0.32 8.06 -52.48 -0.42 -0.11 16 44 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.14 1.08 7.67 -52.49 -0.40 0.68 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -36.10 377.29 -8.30 -44.40 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.93 Total: 5.60 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -4.20 Total: 0.75 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: 0.75 Total: -64.35 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.69 Total: 17.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.10 -8.30 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277997740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.419 kcal (2) G-P(sol) polarization free energy of solvation -36.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds