Wall clock time and date at job start Sat Apr 11 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 120.00092 * 2 1 4 4 H 1.48495 * 109.46905 * 267.64623 * 3 2 1 5 5 H 1.48504 * 109.46681 * 27.64555 * 3 2 1 6 6 H 1.48502 * 109.46960 * 147.64525 * 3 2 1 7 7 C 1.38813 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00239 * 0.17236 * 7 2 1 9 9 N 1.36939 * 119.99784 * 180.16376 * 7 2 1 10 10 C 1.46501 * 119.99674 * 172.10334 * 9 7 2 11 11 C 1.53005 * 109.46779 * 184.30606 * 10 9 7 12 12 H 1.09000 * 110.00071 * 54.69171 * 11 10 9 13 13 C 1.54326 * 109.88052 * 293.59419 * 11 10 9 14 14 C 1.55163 * 102.94219 * 218.39195 * 13 11 10 15 15 C 1.54691 * 101.67655 * 35.33783 * 14 13 11 16 16 N 1.47022 * 109.88160 * 175.79080 * 11 10 9 17 17 C 1.34783 * 125.64653 * 298.31528 * 16 11 10 18 18 O 1.21562 * 119.99784 * 354.92243 * 17 16 11 19 19 C 1.47758 * 120.00091 * 174.91457 * 17 16 11 20 20 C 1.40593 * 126.04733 * 180.02562 * 19 17 16 21 21 N 1.31246 * 106.63263 * 180.02562 * 20 19 17 22 22 N 1.40114 * 107.16981 * 359.97438 * 21 20 19 23 23 C 1.40143 * 125.56365 * 180.02562 * 22 21 20 24 24 C 1.38860 * 120.06913 * 179.70155 * 23 22 21 25 25 C 1.38114 * 119.93381 * 179.81237 * 24 23 22 26 26 C 1.38288 * 120.06349 * 0.43931 * 25 24 23 27 27 C 1.38280 * 120.14191 * 359.79054 * 26 25 24 28 28 C 1.38116 * 120.06809 * 359.97438 * 27 26 25 29 29 N 1.28701 * 108.86946 * 0.02562 * 22 21 20 30 30 H 0.97000 * 120.00041 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00427 * 352.10449 * 9 7 2 32 32 H 1.08993 * 109.47237 * 64.30713 * 10 9 7 33 33 H 1.08995 * 109.47051 * 304.30382 * 10 9 7 34 34 H 1.08996 * 110.72306 * 336.75621 * 13 11 10 35 35 H 1.08998 * 110.71728 * 100.03076 * 13 11 10 36 36 H 1.08998 * 111.00452 * 153.57832 * 14 13 11 37 37 H 1.09004 * 111.00149 * 277.42729 * 14 13 11 38 38 H 1.08999 * 110.38704 * 204.36585 * 15 14 13 39 39 H 1.08997 * 110.23573 * 82.10898 * 15 14 13 40 40 H 1.08005 * 126.68309 * 0.04242 * 20 19 17 41 41 H 1.08002 * 120.03050 * 0.02562 * 24 23 22 42 42 H 1.07993 * 119.96876 * 180.20856 * 25 24 23 43 43 H 1.08004 * 119.92763 * 179.76717 * 26 25 24 44 44 H 1.07994 * 119.96943 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.03758 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5475 2.0176 -1.3989 5 1 1.4236 2.6665 0.6497 6 1 3.5220 1.4550 0.7493 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1374 -0.0019 9 7 3.3796 -1.2022 0.0039 10 6 4.1116 -2.4591 0.1788 11 6 5.6122 -2.1693 0.2520 12 1 5.8129 -1.4378 1.0347 13 6 6.1102 -1.6339 -1.1071 14 6 7.5032 -2.3013 -1.2542 15 6 7.2600 -3.6813 -0.5989 16 7 6.3484 -3.4116 0.5279 17 6 6.2162 -4.1745 1.6311 18 8 5.5037 -3.8047 2.5440 19 6 6.9371 -5.4605 1.7309 20 6 6.8914 -6.3525 2.8167 21 7 7.6682 -7.3635 2.5053 22 7 8.1947 -7.1039 1.2330 23 6 9.0746 -7.9375 0.5294 24 6 9.5222 -7.5696 -0.7325 25 6 10.3923 -8.3914 -1.4218 26 6 10.8105 -9.5840 -0.8602 27 6 10.3628 -9.9554 0.3942 28 6 9.4964 -9.1356 1.0906 29 7 7.7385 -5.9750 0.8161 30 1 -0.4850 0.8400 0.0004 31 1 3.8649 -0.3700 -0.1094 32 1 3.9095 -3.1178 -0.6657 33 1 3.7894 -2.9418 1.1014 34 1 5.4455 -1.9473 -1.9121 35 1 6.2033 -0.5482 -1.0831 36 1 7.7764 -2.4080 -2.3040 37 1 8.2638 -1.7422 -0.7090 38 1 8.1986 -4.0999 -0.2358 39 1 6.7915 -4.3598 -1.3118 40 1 6.3267 -6.2298 3.7291 41 1 9.1930 -6.6401 -1.1730 42 1 10.7435 -8.1042 -2.4018 43 1 11.4880 -10.2267 -1.4028 44 1 10.6908 -10.8875 0.8299 45 1 9.1467 -9.4264 2.0701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277997740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:23 Heat of formation + Delta-G solvation = 111.578122 kcal Electronic energy + Delta-G solvation = -28825.494203 eV Core-core repulsion = 24845.713000 eV Total energy + Delta-G solvation = -3979.781203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.92215 -41.23318 -40.12135 -38.73438 -36.60643 -35.00363 -34.07583 -33.53670 -32.54084 -31.94125 -30.97523 -30.30355 -26.91171 -26.35628 -24.94769 -24.29780 -23.59365 -22.84462 -22.41446 -21.82364 -20.71246 -19.64231 -19.31588 -18.21910 -17.85440 -17.47281 -17.21000 -16.54519 -16.48898 -16.35174 -15.63316 -15.56997 -15.40435 -15.14034 -15.07575 -14.76612 -14.49488 -14.31292 -14.04987 -13.95543 -13.80063 -13.39072 -13.20426 -13.03734 -12.79810 -12.68179 -12.59444 -12.28975 -12.12068 -11.96937 -11.88766 -11.84073 -11.78415 -11.62760 -11.40092 -11.36374 -10.97601 -10.06579 -9.84533 -9.39595 -9.34861 -8.05338 -5.41923 -0.63761 0.29422 0.45607 0.71664 0.78874 1.36974 1.42876 1.50116 1.71193 2.01462 2.45176 2.47668 2.71396 3.24687 3.30211 3.54956 3.62522 3.73278 3.79786 3.83729 3.88622 3.95017 4.14849 4.22356 4.27869 4.33782 4.34358 4.38763 4.46686 4.54508 4.72228 4.76414 4.83728 4.86536 4.98695 5.00286 5.08862 5.10879 5.21326 5.28193 5.32519 5.36486 5.47172 5.49157 5.71580 5.91136 6.16758 6.29474 6.50985 6.88144 7.03813 7.75021 7.99786 9.16117 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002380 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.590840 B =11763.261026 C =12441.745678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.253 1.253 7 C -0.242 4.242 8 H 0.047 0.953 9 N -0.746 5.746 10 C 0.155 3.845 11 C 0.133 3.867 12 H 0.069 0.931 13 C -0.123 4.123 14 C -0.117 4.117 15 C 0.101 3.899 16 N -0.597 5.597 17 C 0.612 3.388 18 O -0.558 6.558 19 C -0.066 4.066 20 C 0.080 3.920 21 N -0.289 5.289 22 N -0.156 5.156 23 C 0.114 3.886 24 C -0.118 4.118 25 C -0.097 4.097 26 C -0.106 4.106 27 C -0.099 4.099 28 C -0.118 4.118 29 N -0.190 5.190 30 H 0.260 0.740 31 H 0.369 0.631 32 H 0.023 0.977 33 H 0.010 0.990 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.237 0.763 41 H 0.141 0.859 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.885 -19.108 -4.698 37.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.254 4.254 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.177 1.177 7 C -0.373 4.373 8 H 0.065 0.935 9 N -0.392 5.392 10 C 0.027 3.973 11 C 0.029 3.971 12 H 0.087 0.913 13 C -0.161 4.161 14 C -0.155 4.155 15 C -0.021 4.021 16 N -0.330 5.330 17 C 0.398 3.602 18 O -0.435 6.435 19 C -0.231 4.231 20 C -0.110 4.110 21 N -0.116 5.116 22 N -0.049 5.049 23 C 0.024 3.976 24 C -0.139 4.139 25 C -0.116 4.116 26 C -0.125 4.125 27 C -0.118 4.118 28 C -0.139 4.139 29 N -0.036 5.036 30 H 0.069 0.931 31 H 0.203 0.797 32 H 0.041 0.959 33 H 0.028 0.972 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.253 0.747 41 H 0.159 0.841 42 H 0.182 0.818 43 H 0.182 0.818 44 H 0.179 0.821 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 32.103 -19.883 -4.706 38.053 hybrid contribution -1.412 1.555 1.014 2.332 sum 30.691 -18.328 -3.693 35.937 Atomic orbital electron populations 1.69905 1.07303 1.26982 1.59022 1.25643 0.96262 1.01669 1.01833 0.85355 0.78560 0.78704 0.78872 1.18916 1.22154 1.17709 1.18935 0.82507 0.93376 1.42468 0.93537 1.42345 1.02414 1.05200 1.89241 1.20914 0.90739 0.88244 0.97380 1.21753 0.90252 0.85593 0.99470 0.91257 1.22731 0.97728 1.01811 0.93857 1.22799 0.95865 0.93613 1.03226 1.22629 0.93427 0.98858 0.87139 1.48350 1.41059 1.24378 1.19204 1.16583 0.80426 0.81640 0.81531 1.90852 1.41055 1.72339 1.39228 1.22681 1.05524 1.00027 0.94849 1.25484 0.96029 0.88897 1.00563 1.78021 1.13967 1.23086 0.96539 1.48654 1.32823 1.12249 1.11205 1.17896 0.94661 0.91696 0.93343 1.21185 0.98814 1.02113 0.91828 1.21463 0.95399 0.93732 1.00970 1.21812 0.98980 0.96564 0.95112 1.21437 0.95464 0.99947 0.94937 1.21100 0.99025 0.92186 1.01547 1.73779 1.08540 0.97362 1.23969 0.93126 0.79697 0.95943 0.97168 0.90217 0.88733 0.86560 0.89495 0.88760 0.90708 0.74715 0.84113 0.81812 0.81838 0.82085 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.05 13.97 21.65 0.30 -64.75 16 2 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.96 46.20 27.60 68.60 1.89 48.09 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.25 -11.12 6.73 99.48 0.67 -10.45 16 7 C -0.24 -14.74 10.47 84.03 0.88 -13.86 16 8 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 9 N -0.75 -37.24 5.22 -343.46 -1.79 -39.03 16 10 C 0.15 6.76 5.65 86.38 0.49 7.25 16 11 C 0.13 4.39 2.93 45.34 0.13 4.53 16 12 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 13 C -0.12 -2.99 6.07 31.79 0.19 -2.80 16 14 C -0.12 -1.92 7.07 31.91 0.23 -1.69 16 15 C 0.10 2.09 5.95 86.78 0.52 2.61 16 16 N -0.60 -17.81 3.07 -791.94 -2.43 -20.24 16 17 C 0.61 20.50 7.58 86.76 0.66 21.16 16 18 O -0.56 -22.96 16.08 -3.91 -0.06 -23.02 16 19 C -0.07 -1.85 6.93 42.20 0.29 -1.56 16 20 C 0.08 2.00 11.91 85.36 1.02 3.01 16 21 N -0.29 -7.09 11.90 -56.32 -0.67 -7.76 16 22 N -0.16 -3.67 4.44 -51.14 -0.23 -3.90 16 23 C 0.11 2.10 6.74 38.11 0.26 2.35 16 24 C -0.12 -1.62 9.61 22.39 0.22 -1.41 16 25 C -0.10 -0.74 10.04 22.25 0.22 -0.52 16 26 C -0.11 -0.61 10.04 22.29 0.22 -0.38 16 27 C -0.10 -0.81 10.04 22.25 0.22 -0.59 16 28 C -0.12 -1.72 9.65 22.39 0.22 -1.50 16 29 N -0.19 -4.70 8.50 -48.60 -0.41 -5.11 16 30 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 31 H 0.37 16.88 5.47 -92.71 -0.51 16.38 16 32 H 0.02 0.99 8.04 -2.39 -0.02 0.97 16 33 H 0.01 0.52 6.91 -2.39 -0.02 0.50 16 34 H 0.08 2.07 7.78 -2.39 -0.02 2.05 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.77 6.52 -2.39 -0.02 1.76 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.24 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.14 1.84 7.67 -2.91 -0.02 1.82 16 42 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 43 H 0.16 -0.08 8.06 -2.91 -0.02 -0.11 16 44 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 45 H 0.13 2.05 7.67 -2.91 -0.02 2.02 16 Total: -1.00 -83.24 377.29 3.30 -79.93 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.48 Total: 22.55 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.23 Total: 13.24 kcal Atomic # 7 Polarization: -135.56 SS G_CDS: -5.23 Total: -140.79 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.06 Total: -23.02 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.89 Total: 48.09 kcal Total: -83.24 3.30 -79.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277997740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.511 kcal (2) G-P(sol) polarization free energy of solvation -83.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds