Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99825 * 2 1 4 4 H 1.48493 * 109.47503 * 85.12704 * 3 2 1 5 5 H 1.48507 * 109.46591 * 205.12579 * 3 2 1 6 6 H 1.48497 * 109.47098 * 325.12091 * 3 2 1 7 7 C 1.38809 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00335 * 5.14540 * 7 2 1 9 9 N 1.36942 * 119.99529 * 185.15104 * 7 2 1 10 10 C 1.46498 * 119.99783 * 185.06949 * 9 7 2 11 11 C 1.52998 * 109.47337 * 175.00957 * 10 9 7 12 12 H 1.09005 * 109.87296 * 306.59102 * 11 10 9 13 13 C 1.54327 * 109.88030 * 67.76115 * 11 10 9 14 14 C 1.55166 * 102.93945 * 141.61166 * 13 11 10 15 15 C 1.54906 * 101.58122 * 324.49997 * 14 13 11 16 16 N 1.47019 * 109.88665 * 185.57451 * 11 10 9 17 17 C 1.34777 * 125.65022 * 61.60465 * 16 11 10 18 18 O 1.21560 * 119.99669 * 5.21265 * 17 16 11 19 19 C 1.47761 * 120.00240 * 185.21717 * 17 16 11 20 20 C 1.40596 * 126.04725 * 180.02562 * 19 17 16 21 21 N 1.31241 * 106.62846 * 179.97438 * 20 19 17 22 22 N 1.40108 * 107.17554 * 0.02562 * 21 20 19 23 23 C 1.40139 * 125.56572 * 180.02562 * 22 21 20 24 24 C 1.38859 * 120.06816 * 179.69283 * 23 22 21 25 25 C 1.38120 * 119.92997 * 179.79195 * 24 23 22 26 26 C 1.38283 * 120.06642 * 0.46155 * 25 24 23 27 27 C 1.38284 * 120.13956 * 359.79493 * 26 25 24 28 28 C 1.38109 * 120.06627 * 359.97216 * 27 26 25 29 29 N 1.28706 * 108.86256 * 359.72462 * 22 21 20 30 30 H 0.97003 * 119.99787 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00208 * 5.06682 * 9 7 2 32 32 H 1.09000 * 109.47435 * 295.01403 * 10 9 7 33 33 H 1.09009 * 109.47186 * 55.00886 * 10 9 7 34 34 H 1.08994 * 110.72539 * 259.97547 * 13 11 10 35 35 H 1.09000 * 110.71570 * 23.25650 * 13 11 10 36 36 H 1.08996 * 111.00213 * 206.42674 * 14 13 11 37 37 H 1.08999 * 110.99994 * 82.57481 * 14 13 11 38 38 H 1.08997 * 110.37180 * 278.17439 * 15 14 13 39 39 H 1.09001 * 110.46157 * 155.89231 * 15 14 13 40 40 H 1.08001 * 126.68307 * 359.95588 * 20 19 17 41 41 H 1.07998 * 120.03655 * 0.02562 * 24 23 22 42 42 H 1.08001 * 119.96272 * 180.21556 * 25 24 23 43 43 H 1.08001 * 119.92928 * 179.76366 * 26 25 24 44 44 H 1.07999 * 119.96238 * 179.97438 * 27 26 25 45 45 H 1.08006 * 120.03003 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3947 2.1060 1.3949 5 1 3.5955 1.4125 -0.5945 6 1 1.5030 2.6207 -0.8006 7 6 2.0102 -1.2022 0.0005 8 1 1.4735 -2.1356 -0.0829 9 7 3.3755 -1.2045 0.1070 10 6 4.1167 -2.4633 -0.0038 11 6 5.6189 -2.1749 0.0254 12 1 5.8689 -1.4341 -0.7342 13 6 6.0271 -1.6584 1.4212 14 6 7.4072 -2.3298 1.6502 15 6 7.2024 -3.7035 0.9641 16 7 6.3709 -3.4144 -0.2186 17 6 6.3097 -4.1630 -1.3377 18 8 5.6596 -3.7796 -2.2905 19 6 7.0328 -5.4498 -1.4063 20 6 7.0572 -6.3275 -2.5044 21 7 7.8094 -7.3448 -2.1553 22 7 8.2508 -7.1036 -0.8477 23 6 9.0808 -7.9485 -0.0986 24 6 9.4546 -7.5924 1.1905 25 6 10.2693 -8.4294 1.9277 26 6 10.7203 -9.6162 1.3799 27 6 10.3542 -9.9711 0.0945 28 6 9.5359 -9.1407 -0.6460 29 7 7.7747 -5.9762 -0.4491 30 1 -0.4850 0.8401 -0.0004 31 1 3.8518 -0.3727 0.2558 32 1 3.8552 -3.1136 0.8309 33 1 3.8593 -2.9551 -0.9420 34 1 6.1223 -0.5727 1.4181 35 1 5.3109 -1.9818 2.1766 36 1 7.6109 -2.4510 2.7141 37 1 8.2021 -1.7647 1.1636 38 1 6.6834 -4.3887 1.6342 39 1 8.1609 -4.1243 0.6602 40 1 6.5547 -6.1913 -3.4506 41 1 9.1057 -6.6639 1.6175 42 1 10.5575 -8.1546 2.9317 43 1 11.3604 -10.2672 1.9570 44 1 10.7085 -10.8985 -0.3306 45 1 9.2499 -9.4186 -1.6497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277997741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = 136.471449 kcal Electronic energy + Delta-G solvation = -28824.031475 eV Core-core repulsion = 24845.329728 eV Total energy + Delta-G solvation = -3978.701747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.00010 -40.06701 -39.54916 -37.46406 -34.70502 -34.22879 -32.97921 -31.71854 -31.48167 -31.30695 -29.92625 -29.02132 -25.66164 -25.04356 -24.09972 -23.19960 -22.03911 -21.93557 -21.68708 -20.71603 -19.38831 -18.60310 -17.64550 -17.00097 -16.83534 -16.72429 -16.30906 -15.68642 -15.31854 -14.88815 -14.49411 -14.42454 -14.29905 -14.02335 -13.96009 -13.62646 -13.35073 -13.07651 -12.99704 -12.65003 -12.48376 -12.36087 -12.04602 -11.91079 -11.72444 -11.46844 -11.20945 -11.11424 -10.95131 -10.90061 -10.69884 -10.51840 -10.49849 -10.17834 -10.01835 -9.58977 -9.54779 -8.82348 -8.77619 -8.52756 -7.17473 -5.71727 -3.07116 0.11057 0.76237 1.37443 1.53202 1.61552 2.85114 3.14767 3.24429 3.38086 3.40370 3.45361 3.49357 4.25425 4.31867 4.41211 4.53729 4.55777 4.59313 4.64180 4.77499 4.84660 4.90633 4.95069 5.08332 5.26329 5.30243 5.39353 5.41510 5.54514 5.58060 5.60027 5.66301 5.75293 5.76262 5.82081 5.86748 5.92361 5.95235 6.00524 6.06872 6.27518 6.36872 6.49607 6.72712 6.87742 7.38579 7.52183 8.03942 8.11885 8.46842 9.26012 9.97655 10.17748 11.46728 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.002378 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.943004 B =11769.866393 C =12437.693965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.089 0.911 9 N -0.749 5.749 10 C 0.150 3.850 11 C 0.128 3.872 12 H 0.081 0.919 13 C -0.125 4.125 14 C -0.134 4.134 15 C 0.104 3.896 16 N -0.597 5.597 17 C 0.615 3.385 18 O -0.513 6.513 19 C -0.041 4.041 20 C 0.083 3.917 21 N -0.279 5.279 22 N -0.166 5.166 23 C 0.157 3.843 24 C -0.112 4.112 25 C -0.099 4.099 26 C -0.118 4.118 27 C -0.100 4.100 28 C -0.108 4.108 29 N -0.200 5.200 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.025 0.975 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.221 0.779 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.319 -18.885 4.091 33.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.217 1.217 7 C -0.369 4.369 8 H 0.107 0.893 9 N -0.395 5.395 10 C 0.022 3.978 11 C 0.025 3.975 12 H 0.099 0.901 13 C -0.163 4.163 14 C -0.173 4.173 15 C -0.019 4.019 16 N -0.330 5.330 17 C 0.400 3.600 18 O -0.386 6.386 19 C -0.208 4.208 20 C -0.108 4.108 21 N -0.106 5.106 22 N -0.058 5.058 23 C 0.066 3.934 24 C -0.133 4.133 25 C -0.117 4.117 26 C -0.137 4.137 27 C -0.119 4.119 28 C -0.129 4.129 29 N -0.044 5.044 30 H 0.069 0.931 31 H 0.192 0.808 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.237 0.763 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 27.484 -19.629 4.078 34.019 hybrid contribution -0.105 1.738 -0.504 1.813 sum 27.379 -17.891 3.574 32.901 Atomic orbital electron populations 1.69718 1.05104 1.25733 1.57619 1.24693 0.95257 0.97162 1.02089 0.86542 0.79555 0.85123 0.77608 1.21187 1.20059 1.21707 1.19034 0.80659 0.94777 1.42419 0.89283 1.42531 1.04491 1.03460 1.89048 1.20939 0.87381 0.89906 0.99612 1.21928 0.93175 0.85007 0.97391 0.90133 1.22736 0.96428 1.01042 0.96129 1.22818 0.97965 0.95456 1.01013 1.22436 0.95299 0.97401 0.86779 1.48240 1.43824 1.25433 1.15540 1.16250 0.80528 0.81044 0.82212 1.90891 1.41752 1.70468 1.35466 1.23045 1.04976 1.00347 0.92440 1.25194 0.95620 0.89424 1.00608 1.78029 1.15530 1.22962 0.94118 1.48333 1.35503 1.12586 1.09343 1.17403 0.94377 0.90546 0.91064 1.20999 0.98938 1.01486 0.91843 1.21085 0.96653 0.93913 1.00085 1.21355 0.99803 0.96933 0.95586 1.21077 0.97026 0.99471 0.94310 1.20953 0.98239 0.92300 1.01446 1.73857 1.08413 0.96920 1.25190 0.93115 0.80765 0.95699 0.93759 0.89944 0.89529 0.89782 0.90794 0.91133 0.89889 0.76299 0.84092 0.84549 0.85086 0.84651 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.99 13.97 55.49 0.78 -29.22 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.42 27.71 -169.99 -4.71 17.71 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.27 -6.59 6.59 56.52 0.37 -6.22 16 6 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 7 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.75 -18.46 5.24 -59.91 -0.31 -18.77 16 10 C 0.15 3.15 5.67 -4.04 -0.02 3.12 16 11 C 0.13 2.12 2.91 -66.95 -0.20 1.92 16 12 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 13 C -0.13 -1.66 6.12 -24.89 -0.15 -1.81 16 14 C -0.13 -1.33 7.09 -24.58 -0.17 -1.50 16 15 C 0.10 1.16 5.97 -2.53 -0.02 1.15 16 16 N -0.60 -8.86 3.07 -164.15 -0.50 -9.36 16 17 C 0.62 9.87 7.57 -12.37 -0.09 9.78 16 18 O -0.51 -9.90 16.08 5.31 0.09 -9.81 16 19 C -0.04 -0.56 6.93 -82.99 -0.57 -1.13 16 20 C 0.08 0.99 11.91 -16.92 -0.20 0.78 16 21 N -0.28 -3.36 11.90 30.85 0.37 -2.99 16 22 N -0.17 -1.96 4.44 32.48 0.14 -1.81 16 23 C 0.16 1.51 6.74 -83.60 -0.56 0.95 16 24 C -0.11 -0.87 9.61 -39.39 -0.38 -1.24 16 25 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 26 C -0.12 -0.57 10.04 -39.55 -0.40 -0.97 16 27 C -0.10 -0.55 10.04 -39.61 -0.40 -0.95 16 28 C -0.11 -0.85 9.65 -39.40 -0.38 -1.23 16 29 N -0.20 -2.47 8.49 33.29 0.28 -2.19 16 30 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 31 H 0.36 8.44 5.45 -40.82 -0.22 8.22 16 32 H 0.03 0.53 8.01 -51.93 -0.42 0.11 16 33 H 0.04 1.05 6.87 -51.92 -0.36 0.69 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.21 7.76 -51.93 -0.40 0.80 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.86 6.50 -51.93 -0.34 0.52 16 40 H 0.22 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.14 1.04 7.67 -52.49 -0.40 0.63 16 42 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.13 0.32 8.06 -52.49 -0.42 -0.11 16 44 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.14 1.08 7.67 -52.48 -0.40 0.68 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -36.11 377.20 -8.32 -44.43 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.93 Total: 5.58 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -4.20 Total: 0.76 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: 0.75 Total: -64.35 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.11 -8.32 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277997741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.902 kcal (2) G-P(sol) polarization free energy of solvation -36.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds