Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48496 * 109.47358 * 269.99964 * 3 2 1 5 5 H 1.48498 * 109.47273 * 30.00689 * 3 2 1 6 6 H 1.48505 * 109.46671 * 150.00078 * 3 2 1 7 7 C 1.38802 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00332 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 H 1.09007 * 110.63969 * 34.30354 * 14 13 11 16 16 C 1.55154 * 110.72324 * 271.16199 * 14 13 11 17 17 C 1.54912 * 101.58394 * 206.13123 * 16 14 13 18 18 N 1.47420 * 104.83066 * 37.00976 * 17 16 14 19 19 C 1.34769 * 125.65010 * 155.90967 * 18 17 16 20 20 O 1.21286 * 120.00285 * 179.97438 * 19 18 17 21 21 C 1.50704 * 119.99940 * 359.97438 * 19 18 17 22 22 N 1.46905 * 109.46917 * 179.97438 * 21 19 18 23 23 C 1.48529 * 111.00121 * 52.60324 * 22 21 19 24 24 C 1.54937 * 103.22560 * 159.71764 * 23 22 21 25 25 C 1.54588 * 102.92275 * 322.58525 * 24 23 22 26 26 C 1.47907 * 110.99414 * 169.99929 * 22 21 19 27 27 C 1.47329 * 108.73493 * 335.71532 * 18 17 16 28 28 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 31 31 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 32 32 H 1.08997 * 111.00426 * 324.20751 * 16 14 13 33 33 H 1.09009 * 111.00378 * 88.05826 * 16 14 13 34 34 H 1.08995 * 110.36820 * 155.84739 * 17 16 14 35 35 H 1.08991 * 110.36494 * 278.17098 * 17 16 14 36 36 H 1.08998 * 109.46922 * 299.99703 * 21 19 18 37 37 H 1.08996 * 109.47230 * 60.00172 * 21 19 18 38 38 H 1.09002 * 110.67147 * 278.15257 * 23 22 21 39 39 H 1.09004 * 110.66867 * 41.28677 * 23 22 21 40 40 H 1.09011 * 110.72311 * 204.22754 * 24 23 22 41 41 H 1.08993 * 110.87552 * 81.01839 * 24 23 22 42 42 H 1.09000 * 110.30943 * 263.04035 * 25 24 23 43 43 H 1.09002 * 110.30921 * 140.87249 * 25 24 23 44 44 H 1.08999 * 109.92168 * 333.50693 * 26 22 21 45 45 H 1.09002 * 109.91550 * 94.80559 * 26 22 21 46 46 H 1.09001 * 110.06042 * 241.87098 * 27 18 17 47 47 H 1.09001 * 109.84840 * 120.61393 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3439 -2.2964 -0.0070 13 7 6.0457 -4.4948 -0.0030 14 6 7.4906 -4.7359 -0.0037 15 1 8.0086 -3.9681 0.5711 16 6 8.0364 -4.7970 -1.4548 17 6 9.2913 -5.6879 -1.2779 18 7 8.9024 -6.6919 -0.2709 19 6 9.4572 -7.9111 -0.1224 20 8 9.0561 -8.6583 0.7446 21 6 10.5759 -8.3460 -1.0336 22 7 11.0045 -9.7031 -0.6695 23 6 9.8473 -10.6333 -0.6266 24 6 10.5084 -12.0280 -0.7619 25 6 11.6579 -11.7702 -1.7629 26 6 11.9294 -10.2565 -1.6825 27 6 7.8100 -6.1406 0.5496 28 1 -0.4850 0.8400 0.0004 29 1 3.6433 -3.4311 -0.8926 30 1 3.6440 -3.4323 0.8874 31 1 5.4290 -5.2435 -0.0036 32 1 7.3152 -5.2663 -2.1240 33 1 8.3094 -3.8039 -1.8117 34 1 9.5471 -6.1741 -2.2193 35 1 10.1305 -5.0936 -0.9167 36 1 10.2268 -8.3396 -2.0662 37 1 11.4165 -7.6599 -0.9300 38 1 9.3201 -10.5480 0.3236 39 1 9.1716 -10.4454 -1.4610 40 1 9.8010 -12.7527 -1.1651 41 1 10.9007 -12.3665 0.1971 42 1 11.3503 -12.0463 -2.7715 43 1 12.5465 -12.3299 -1.4710 44 1 11.7399 -9.7933 -2.6508 45 1 12.9613 -10.0799 -1.3790 46 1 8.1251 -6.0663 1.5905 47 1 6.9299 -6.7789 0.4713 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283341781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = -80.217049 kcal Electronic energy + Delta-G solvation = -26672.962884 eV Core-core repulsion = 22788.016019 eV Total energy + Delta-G solvation = -3884.946865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55240 -40.71002 -39.45817 -38.21321 -35.38205 -34.66788 -33.40452 -32.20172 -30.76237 -29.76116 -29.59496 -27.87041 -27.27702 -24.33354 -22.74355 -22.18744 -21.74476 -21.69463 -20.34183 -19.90473 -18.30062 -18.18043 -17.41967 -17.28888 -17.09717 -16.97716 -16.53559 -16.33911 -15.95208 -15.77179 -15.33160 -14.95885 -14.76787 -14.64080 -14.60531 -14.34713 -13.86379 -13.68961 -13.53878 -13.34210 -13.29105 -13.12121 -13.02885 -12.98009 -12.73365 -12.56828 -12.49792 -12.21634 -11.97408 -11.90833 -11.86327 -11.46596 -11.16686 -11.04634 -10.72857 -10.53782 -10.21147 -9.77504 -9.41298 -8.98888 -8.51247 -6.22059 0.97997 1.32035 1.44528 1.51280 1.52358 1.54367 1.72418 2.24092 2.28489 2.71378 2.87162 3.02400 3.22792 3.49871 3.65090 3.74765 3.82925 3.94251 3.99404 4.07739 4.12979 4.22249 4.24794 4.27572 4.32749 4.38718 4.47922 4.55600 4.64273 4.70290 4.73286 4.75091 4.93481 4.95340 4.99551 5.04693 5.10334 5.15372 5.27078 5.30924 5.40332 5.70688 5.85536 5.93826 6.11773 6.36370 6.42841 6.93849 7.08285 7.14167 8.61122 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037656 B = 0.001675 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.402741 B =16712.122534 C =17075.944359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.236 1.236 7 C -0.531 4.531 8 H 0.061 0.939 9 S -0.171 6.171 10 C -0.114 4.114 11 C 0.543 3.457 12 O -0.555 6.555 13 N -0.706 5.706 14 C 0.137 3.863 15 H 0.094 0.906 16 C -0.141 4.141 17 C 0.102 3.898 18 N -0.617 5.617 19 C 0.524 3.476 20 O -0.565 6.565 21 C 0.037 3.963 22 N -0.525 5.525 23 C 0.033 3.967 24 C -0.126 4.126 25 C -0.129 4.129 26 C 0.033 3.967 27 C 0.110 3.890 28 H 0.277 0.723 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.416 0.584 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.147 -22.159 -6.832 34.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.159 1.159 7 C -0.679 4.679 8 H 0.079 0.921 9 S 0.055 5.945 10 C -0.265 4.265 11 C 0.328 3.672 12 O -0.432 6.432 13 N -0.360 5.360 14 C 0.031 3.969 15 H 0.112 0.888 16 C -0.180 4.180 17 C -0.020 4.020 18 N -0.353 5.353 19 C 0.314 3.686 20 O -0.443 6.443 21 C -0.094 4.094 22 N -0.250 5.250 23 C -0.095 4.095 24 C -0.164 4.164 25 C -0.167 4.167 26 C -0.094 4.094 27 C -0.014 4.014 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.254 0.746 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 27.338 -20.956 -5.855 34.940 hybrid contribution -2.207 -0.526 -0.518 2.328 sum 25.131 -21.482 -6.374 33.670 Atomic orbital electron populations 1.70022 1.07374 1.29021 1.49125 1.25583 0.95266 1.02319 0.92861 0.85852 0.80681 0.79496 0.80248 1.18591 1.18505 1.15939 1.22482 0.90433 0.96659 1.58303 0.92054 1.84660 1.06215 1.05999 1.97590 1.23283 0.95922 0.99739 1.07513 1.19856 0.89302 0.83119 0.74885 1.90694 1.59113 1.43598 1.49819 1.45674 1.07606 1.07141 1.75554 1.21904 0.80958 0.96109 0.97898 0.88760 1.23202 0.97539 1.01351 0.95869 1.22568 0.97436 0.89366 0.92584 1.48549 1.36487 1.15181 1.35049 1.20718 0.83341 0.79598 0.84948 1.90669 1.64240 1.52781 1.36657 1.22260 0.96828 0.93247 0.97078 1.64661 1.13932 1.00741 1.45705 1.23370 0.92589 0.92080 1.01426 1.22518 0.97845 0.96045 1.00019 1.22417 0.99134 0.95280 0.99840 1.23011 0.97698 0.95078 0.93590 1.21993 0.91148 0.92969 0.95266 0.91400 0.86734 0.86951 0.74623 0.89597 0.89181 0.87493 0.89105 0.89530 0.85670 0.90086 0.94607 0.90233 0.91481 0.90359 0.90119 0.92188 0.89479 0.91009 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 13.97 21.65 0.30 -55.14 16 2 C 0.05 2.62 5.50 84.86 0.47 3.08 16 3 Si 0.92 44.29 27.74 68.60 1.90 46.20 16 4 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.24 -11.32 6.74 99.48 0.67 -10.65 16 7 C -0.53 -30.46 10.04 67.96 0.68 -29.78 16 8 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 9 S -0.17 -8.37 18.55 -56.49 -1.05 -9.41 16 10 C -0.11 -4.03 6.16 71.24 0.44 -3.59 16 11 C 0.54 16.90 7.85 87.66 0.69 17.59 16 12 O -0.55 -21.56 15.55 -3.01 -0.05 -21.61 16 13 N -0.71 -14.60 5.19 -436.93 -2.27 -16.87 16 14 C 0.14 2.43 3.26 46.18 0.15 2.58 16 15 H 0.09 2.00 7.63 -2.38 -0.02 1.98 16 16 C -0.14 -1.90 6.77 31.99 0.22 -1.68 16 17 C 0.10 0.93 6.69 86.86 0.58 1.51 16 18 N -0.62 -9.20 3.33 -811.05 -2.70 -11.90 16 19 C 0.52 9.65 7.56 87.66 0.66 10.31 16 20 O -0.56 -15.14 13.85 -3.05 -0.04 -15.18 16 21 C 0.04 0.44 4.52 85.56 0.39 0.83 16 22 N -0.53 -8.16 5.26 -887.54 -4.67 -12.83 16 23 C 0.03 0.57 5.30 86.65 0.46 1.03 16 24 C -0.13 -1.61 7.06 31.80 0.22 -1.39 16 25 C -0.13 -1.16 6.93 31.47 0.22 -0.94 16 26 C 0.03 0.33 6.70 86.45 0.58 0.91 16 27 C 0.11 1.82 6.64 86.67 0.58 2.40 16 28 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 31 H 0.42 6.39 8.34 -92.71 -0.77 5.62 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.11 0.45 7.48 -2.39 -0.02 0.44 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 0.67 7.52 -2.39 -0.02 0.65 16 37 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.92 5.97 -2.39 -0.01 1.91 16 39 H 0.04 0.60 8.02 -2.39 -0.02 0.58 16 40 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 0.41 7.57 -2.39 -0.02 0.39 16 45 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.08 1.26 7.70 -2.39 -0.02 1.24 16 Total: -1.00 -77.70 389.62 -2.08 -79.78 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.16 Total: 14.13 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.33 Total: 2.84 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -9.34 Total: -96.75 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.09 Total: -36.79 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.90 Total: 46.20 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.05 Total: -9.41 kcal Total: -77.70 -2.08 -79.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283341781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.437 kcal (2) G-P(sol) polarization free energy of solvation -77.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds