Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47465 * 60.00198 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05812 * 359.63749 * 13 11 10 15 15 C 1.53755 * 87.89102 * 152.95871 * 14 13 11 16 16 C 1.53004 * 114.26718 * 139.78838 * 15 14 13 17 17 N 1.46500 * 109.46740 * 91.47579 * 16 15 14 18 18 C 1.34776 * 119.99541 * 179.97438 * 17 16 15 19 19 O 1.21271 * 120.00453 * 0.02562 * 18 17 16 20 20 C 1.50702 * 119.99514 * 180.02562 * 18 17 16 21 21 N 1.46908 * 109.46755 * 180.02562 * 20 18 17 22 22 C 1.48530 * 111.00031 * 52.60437 * 21 20 18 23 23 C 1.54940 * 103.22622 * 159.72127 * 22 21 20 24 24 C 1.54600 * 102.92069 * 322.58388 * 23 22 21 25 25 C 1.47903 * 110.99857 * 169.99953 * 21 20 18 26 26 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 27 27 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 29 29 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 30 30 H 1.09010 * 113.46411 * 267.68953 * 14 13 11 31 31 H 1.08997 * 113.47100 * 38.12526 * 14 13 11 32 32 H 1.09001 * 114.39331 * 272.67753 * 15 14 13 33 33 H 1.09000 * 109.46950 * 211.47638 * 16 15 14 34 34 H 1.08992 * 109.47187 * 331.47888 * 16 15 14 35 35 H 0.97004 * 120.00077 * 0.02562 * 17 16 15 36 36 H 1.09000 * 109.47422 * 299.99894 * 20 18 17 37 37 H 1.09002 * 109.47210 * 60.00278 * 20 18 17 38 38 H 1.08998 * 110.66742 * 278.15661 * 22 21 20 39 39 H 1.09002 * 110.66962 * 41.28724 * 22 21 20 40 40 H 1.08999 * 110.72470 * 204.22943 * 23 22 21 41 41 H 1.09001 * 110.72577 * 80.93985 * 23 22 21 42 42 H 1.08999 * 110.31060 * 263.04273 * 24 23 22 43 43 H 1.09001 * 110.39287 * 140.91775 * 24 23 22 44 44 H 1.08995 * 109.91895 * 333.50845 * 25 21 20 45 45 H 1.09005 * 109.91819 * 94.60215 * 25 21 20 46 46 H 1.09001 * 113.46952 * 321.86856 * 26 13 11 47 47 H 1.09004 * 113.46955 * 92.25117 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0270 15 6 4.0986 -7.8632 0.6762 16 6 5.0133 -8.9811 0.1713 17 7 6.2358 -9.0134 0.9779 18 6 7.1936 -9.9239 0.7135 19 8 7.0437 -10.7162 -0.1923 20 6 8.4510 -9.9575 1.5436 21 7 9.3292 -11.0307 1.0588 22 6 9.5590 -10.9106 -0.4037 23 6 10.8535 -11.7320 -0.6279 24 6 11.6891 -11.4110 0.6327 25 6 10.6662 -10.9452 1.6853 26 6 2.7297 -7.8092 -0.0165 27 1 -0.4851 0.8400 -0.0004 28 1 3.1212 -3.7293 -0.8992 29 1 3.1279 -3.7332 0.8807 30 1 4.7224 -6.6035 -1.0299 31 1 4.8324 -5.7788 0.5838 32 1 4.0523 -7.8025 1.7636 33 1 4.4977 -9.9378 0.2545 34 1 5.2709 -8.7965 -0.8715 35 1 6.3556 -8.3799 1.7027 36 1 8.9669 -9.0010 1.4606 37 1 8.1930 -10.1419 2.5865 38 1 8.7277 -11.3431 -0.9605 39 1 9.7110 -9.8686 -0.6850 40 1 11.3703 -11.3994 -1.5281 41 1 10.6299 -12.7974 -0.6814 42 1 12.4031 -10.6151 0.4208 43 1 12.2101 -12.3031 0.9803 44 1 10.8750 -9.9156 1.9757 45 1 10.7084 -11.5934 2.5606 46 1 1.9144 -8.1821 0.6034 47 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284967494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = -20.706878 kcal Electronic energy + Delta-G solvation = -26093.828157 eV Core-core repulsion = 22211.461847 eV Total energy + Delta-G solvation = -3882.366311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75878 -40.18367 -38.56301 -37.66055 -35.00945 -32.84050 -32.46842 -31.11377 -29.24457 -29.20538 -27.29381 -26.17671 -25.58912 -25.06420 -21.82773 -21.41169 -21.26288 -20.61126 -19.11885 -17.79430 -17.51419 -16.93535 -16.68661 -16.45527 -15.93733 -15.90889 -15.49635 -15.20354 -14.84204 -14.69905 -14.29729 -14.14928 -13.86612 -13.58480 -13.37598 -13.15229 -12.84812 -12.80745 -12.62978 -12.53558 -12.31212 -12.00783 -11.96272 -11.73523 -11.66887 -11.36272 -11.10254 -11.06042 -11.01197 -10.90096 -10.79371 -9.99984 -9.85133 -9.51744 -9.42776 -9.11214 -8.87071 -8.68111 -8.27957 -6.54854 -6.25429 -3.96609 2.24475 2.56671 2.71718 3.00137 3.18607 3.21438 3.27731 3.51429 3.57663 3.89292 4.16198 4.20057 4.23099 4.39730 4.50267 4.51770 4.57481 4.72974 4.74628 4.85104 4.86930 4.92669 5.09846 5.11158 5.20662 5.22914 5.23448 5.31201 5.37227 5.38674 5.43547 5.45132 5.55047 5.60334 5.74519 5.76075 5.81328 5.88553 5.95447 6.08492 6.09285 6.41579 6.43503 7.06636 7.56021 7.78484 7.84500 8.31530 8.47923 9.19849 10.82076 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.001647 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.482714 B =16992.925873 C =18227.318214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.144 4.144 11 C 0.562 3.438 12 O -0.512 6.512 13 N -0.654 5.654 14 C 0.106 3.894 15 C -0.141 4.141 16 C 0.134 3.866 17 N -0.730 5.730 18 C 0.513 3.487 19 O -0.524 6.524 20 C 0.026 3.974 21 N -0.503 5.503 22 C 0.030 3.970 23 C -0.127 4.127 24 C -0.132 4.132 25 C 0.034 3.966 26 C 0.116 3.884 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.115 -22.629 3.418 32.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.295 4.295 11 C 0.352 3.648 12 O -0.386 6.386 13 N -0.393 5.393 14 C -0.018 4.018 15 C -0.161 4.161 16 C 0.010 3.990 17 N -0.383 5.383 18 C 0.299 3.701 19 O -0.399 6.399 20 C -0.106 4.106 21 N -0.227 5.227 22 C -0.097 4.097 23 C -0.165 4.165 24 C -0.170 4.170 25 C -0.094 4.094 26 C -0.008 4.008 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.237 0.763 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.604 -23.660 2.893 31.507 hybrid contribution 2.428 2.546 0.231 3.526 sum 23.032 -21.114 3.124 31.401 Atomic orbital electron populations 1.70024 1.05959 1.27411 1.46804 1.24996 0.95034 0.99046 0.94489 0.86108 0.79547 0.81833 0.77948 1.19632 1.20522 1.20522 1.22892 0.94921 0.91549 1.59019 0.90873 1.85426 1.04838 0.96374 1.96718 1.23467 1.06533 0.94640 1.04822 1.19948 0.85276 0.84887 0.74682 1.90722 1.14784 1.84855 1.48220 1.49607 1.07753 1.06011 1.75908 1.23119 0.82713 0.95435 1.00521 1.23341 0.96340 0.94865 1.01533 1.21248 0.83980 0.98603 0.95206 1.45972 1.19219 1.36274 1.36837 1.20468 0.84720 0.80349 0.84554 1.90662 1.78883 1.39120 1.31245 1.22242 0.92948 0.95064 1.00328 1.64698 1.10210 1.42211 1.05618 1.23541 0.98871 0.98539 0.88730 1.22531 0.95489 1.01152 0.97305 1.22399 0.97587 1.01543 0.95489 1.22942 0.88027 1.00238 0.98207 1.22796 0.96161 0.81344 1.00513 0.92180 0.89331 0.89328 0.89657 0.90158 0.86962 0.90524 0.90714 0.76337 0.91628 0.87572 0.86955 0.94449 0.91100 0.90660 0.91523 0.90917 0.93660 0.90077 0.90029 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.14 -2.94 5.98 36.00 0.22 -2.73 16 11 C 0.56 10.83 8.10 -10.99 -0.09 10.74 16 12 O -0.51 -12.02 16.64 5.56 0.09 -11.92 16 13 N -0.65 -8.93 3.69 -185.04 -0.68 -9.61 16 14 C 0.11 0.93 8.00 -8.38 -0.07 0.86 16 15 C -0.14 -0.95 4.11 -89.96 -0.37 -1.32 16 16 C 0.13 0.84 5.59 -4.04 -0.02 0.82 16 17 N -0.73 -4.09 5.56 -60.30 -0.33 -4.43 16 18 C 0.51 4.06 7.54 -10.99 -0.08 3.98 16 19 O -0.52 -6.10 13.52 5.57 0.08 -6.02 16 20 C 0.03 0.15 5.52 -4.97 -0.03 0.12 16 21 N -0.50 -3.89 5.26 -231.88 -1.22 -5.11 16 22 C 0.03 0.25 5.30 -1.90 -0.01 0.24 16 23 C -0.13 -0.81 7.06 -24.87 -0.18 -0.98 16 24 C -0.13 -0.69 6.93 -25.37 -0.18 -0.87 16 25 C 0.03 0.19 6.69 -2.76 -0.02 0.17 16 26 C 0.12 1.15 8.19 -8.50 -0.07 1.08 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.09 0.66 7.88 -51.92 -0.41 0.25 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.52 7.81 -51.93 -0.41 0.12 16 35 H 0.40 1.27 8.47 -40.82 -0.35 0.92 16 36 H 0.07 0.29 7.81 -51.93 -0.41 -0.11 16 37 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 1.17 5.97 -51.93 -0.31 0.86 16 39 H 0.04 0.30 8.02 -51.93 -0.42 -0.12 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 0.22 7.57 -51.93 -0.39 -0.18 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -37.27 398.80 -10.98 -48.25 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -7.72 Total: -3.42 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -0.69 Total: -0.80 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -1.50 Total: -44.45 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.27 -10.98 -48.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284967494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.539 kcal (2) G-P(sol) polarization free energy of solvation -37.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds