Wall clock time and date at job start Sat Apr 11 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47465 * 60.00198 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05812 * 359.63749 * 13 11 10 15 15 C 1.53755 * 87.89102 * 152.95871 * 14 13 11 16 16 C 1.53004 * 114.26718 * 139.78838 * 15 14 13 17 17 N 1.46500 * 109.46740 * 91.47579 * 16 15 14 18 18 C 1.34776 * 119.99541 * 179.97438 * 17 16 15 19 19 O 1.21271 * 120.00453 * 0.02562 * 18 17 16 20 20 C 1.50702 * 119.99514 * 180.02562 * 18 17 16 21 21 N 1.46908 * 109.46755 * 180.02562 * 20 18 17 22 22 C 1.48530 * 111.00031 * 52.60437 * 21 20 18 23 23 C 1.54940 * 103.22622 * 159.72127 * 22 21 20 24 24 C 1.54600 * 102.92069 * 322.58388 * 23 22 21 25 25 C 1.47903 * 110.99857 * 169.99953 * 21 20 18 26 26 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 27 27 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 29 29 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 30 30 H 1.09010 * 113.46411 * 267.68953 * 14 13 11 31 31 H 1.08997 * 113.47100 * 38.12526 * 14 13 11 32 32 H 1.09001 * 114.39331 * 272.67753 * 15 14 13 33 33 H 1.09000 * 109.46950 * 211.47638 * 16 15 14 34 34 H 1.08992 * 109.47187 * 331.47888 * 16 15 14 35 35 H 0.97004 * 120.00077 * 0.02562 * 17 16 15 36 36 H 1.09000 * 109.47422 * 299.99894 * 20 18 17 37 37 H 1.09002 * 109.47210 * 60.00278 * 20 18 17 38 38 H 1.08998 * 110.66742 * 278.15661 * 22 21 20 39 39 H 1.09002 * 110.66962 * 41.28724 * 22 21 20 40 40 H 1.08999 * 110.72470 * 204.22943 * 23 22 21 41 41 H 1.09001 * 110.72577 * 80.93985 * 23 22 21 42 42 H 1.08999 * 110.31060 * 263.04273 * 24 23 22 43 43 H 1.09001 * 110.39287 * 140.91775 * 24 23 22 44 44 H 1.08995 * 109.91895 * 333.50845 * 25 21 20 45 45 H 1.09005 * 109.91819 * 94.60215 * 25 21 20 46 46 H 1.09001 * 113.46952 * 321.86856 * 26 13 11 47 47 H 1.09004 * 113.46955 * 92.25117 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0270 15 6 4.0986 -7.8632 0.6762 16 6 5.0133 -8.9811 0.1713 17 7 6.2358 -9.0134 0.9779 18 6 7.1936 -9.9239 0.7135 19 8 7.0437 -10.7162 -0.1923 20 6 8.4510 -9.9575 1.5436 21 7 9.3292 -11.0307 1.0588 22 6 9.5590 -10.9106 -0.4037 23 6 10.8535 -11.7320 -0.6279 24 6 11.6891 -11.4110 0.6327 25 6 10.6662 -10.9452 1.6853 26 6 2.7297 -7.8092 -0.0165 27 1 -0.4851 0.8400 -0.0004 28 1 3.1212 -3.7293 -0.8992 29 1 3.1279 -3.7332 0.8807 30 1 4.7224 -6.6035 -1.0299 31 1 4.8324 -5.7788 0.5838 32 1 4.0523 -7.8025 1.7636 33 1 4.4977 -9.9378 0.2545 34 1 5.2709 -8.7965 -0.8715 35 1 6.3556 -8.3799 1.7027 36 1 8.9669 -9.0010 1.4606 37 1 8.1930 -10.1419 2.5865 38 1 8.7277 -11.3431 -0.9605 39 1 9.7110 -9.8686 -0.6850 40 1 11.3703 -11.3994 -1.5281 41 1 10.6299 -12.7974 -0.6814 42 1 12.4031 -10.6151 0.4208 43 1 12.2101 -12.3031 0.9803 44 1 10.8750 -9.9156 1.9757 45 1 10.7084 -11.5934 2.5606 46 1 1.9144 -8.1821 0.6034 47 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284967494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:54 Heat of formation + Delta-G solvation = -49.439547 kcal Electronic energy + Delta-G solvation = -26095.074099 eV Core-core repulsion = 22211.461847 eV Total energy + Delta-G solvation = -3883.612253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60149 -40.92891 -39.29426 -38.80952 -35.69015 -34.60849 -33.34288 -32.30283 -30.38230 -29.70668 -28.09460 -27.64700 -26.96171 -25.88928 -22.41711 -22.10595 -21.68670 -21.31142 -20.35729 -19.54200 -18.20941 -17.93811 -17.53343 -17.09249 -16.92352 -16.85503 -16.59934 -16.46661 -16.14858 -15.84402 -15.41850 -14.90809 -14.78570 -14.65254 -14.28052 -14.11856 -13.95034 -13.66385 -13.47283 -13.32605 -13.21330 -13.09834 -13.02780 -12.92742 -12.61306 -12.44152 -12.39402 -12.18349 -11.87585 -11.73723 -11.67511 -11.44219 -11.17802 -10.97148 -10.61628 -10.31137 -10.03758 -9.80427 -9.35958 -8.70927 -8.36708 -6.15987 1.18863 1.40691 1.41754 1.52144 1.55726 1.67512 1.94345 2.11571 2.25152 2.97669 3.07772 3.17770 3.23595 3.60689 3.74691 3.79320 3.80122 4.00426 4.06996 4.11586 4.18072 4.23521 4.34002 4.37922 4.41524 4.45687 4.47205 4.55881 4.59620 4.67168 4.76591 4.77155 4.82046 4.88240 4.96235 5.01413 5.13661 5.20188 5.25956 5.31954 5.39865 5.54151 5.91002 5.99155 6.17932 6.57128 6.61987 7.04422 7.06800 7.32452 8.72901 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.001647 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.482714 B =16992.925873 C =18227.318214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.117 4.117 11 C 0.559 3.441 12 O -0.570 6.570 13 N -0.654 5.654 14 C 0.101 3.899 15 C -0.107 4.107 16 C 0.141 3.859 17 N -0.717 5.717 18 C 0.509 3.491 19 O -0.567 6.567 20 C 0.027 3.973 21 N -0.525 5.525 22 C 0.033 3.967 23 C -0.127 4.127 24 C -0.130 4.130 25 C 0.033 3.967 26 C 0.105 3.895 27 H 0.272 0.728 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.417 0.583 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.598 -22.455 4.392 35.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.268 4.268 11 C 0.348 3.652 12 O -0.449 6.449 13 N -0.391 5.391 14 C -0.021 4.021 15 C -0.126 4.126 16 C 0.017 3.983 17 N -0.370 5.370 18 C 0.296 3.704 19 O -0.445 6.445 20 C -0.104 4.104 21 N -0.250 5.250 22 C -0.094 4.094 23 C -0.165 4.165 24 C -0.168 4.168 25 C -0.094 4.094 26 C -0.018 4.018 27 H 0.081 0.919 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.255 0.745 36 H 0.104 0.896 37 H 0.144 0.856 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 24.154 -23.514 3.895 33.934 hybrid contribution 1.405 2.312 -0.076 2.707 sum 25.559 -21.201 3.819 33.427 Atomic orbital electron populations 1.70190 1.08028 1.28625 1.47930 1.26149 0.95973 1.03366 0.93644 0.84884 0.78630 0.76181 0.78112 1.17900 1.19964 1.19837 1.23221 0.95344 0.91800 1.58993 0.89829 1.85626 1.10552 0.99372 1.97044 1.23251 1.03400 0.93766 1.06401 1.19647 0.85044 0.85552 0.74950 1.90694 1.17161 1.85640 1.51365 1.49571 1.09773 1.06531 1.73183 1.23514 0.79615 0.96703 1.02228 1.23084 0.93874 0.93753 1.01910 1.21095 0.84080 0.98001 0.95169 1.45838 1.18371 1.35980 1.36839 1.20889 0.85464 0.79883 0.84119 1.90665 1.79800 1.40920 1.33151 1.22322 0.91804 0.95603 1.00659 1.64653 1.11525 1.43502 1.05295 1.23375 0.98507 0.98379 0.89160 1.22528 0.95145 1.00395 0.98456 1.22413 0.97516 1.02208 0.94642 1.22995 0.87071 1.01163 0.98214 1.23141 0.97955 0.78768 1.01890 0.91938 0.87756 0.87356 0.87951 0.88509 0.85451 0.90925 0.90997 0.74542 0.89625 0.85630 0.89793 0.94560 0.90331 0.91516 0.90530 0.90281 0.92361 0.89654 0.90706 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.15 29.55 68.60 2.03 45.17 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.55 -31.08 9.50 67.95 0.65 -30.43 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.12 -4.72 5.98 71.24 0.43 -4.29 16 11 C 0.56 21.44 8.10 87.66 0.71 22.15 16 12 O -0.57 -27.64 16.64 -3.02 -0.05 -27.69 16 13 N -0.65 -16.75 3.69 -857.73 -3.16 -19.91 16 14 C 0.10 1.43 8.00 83.26 0.67 2.09 16 15 C -0.11 -1.10 4.11 -10.36 -0.04 -1.15 16 16 C 0.14 1.41 5.59 86.38 0.48 1.89 16 17 N -0.72 -5.94 5.56 -463.07 -2.57 -8.51 16 18 C 0.51 7.11 7.54 87.66 0.66 7.77 16 19 O -0.57 -12.94 13.52 -3.00 -0.04 -12.98 16 20 C 0.03 0.25 5.52 85.56 0.47 0.72 16 21 N -0.52 -7.32 5.26 -887.55 -4.67 -11.99 16 22 C 0.03 0.52 5.30 86.65 0.46 0.98 16 23 C -0.13 -1.53 7.06 31.80 0.22 -1.30 16 24 C -0.13 -1.12 6.93 31.47 0.22 -0.91 16 25 C 0.03 0.30 6.69 86.44 0.58 0.88 16 26 C 0.11 1.90 8.19 83.18 0.68 2.58 16 27 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 29 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 30 H 0.10 1.20 7.88 -2.38 -0.02 1.18 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.83 7.81 -2.39 -0.02 0.81 16 35 H 0.42 1.01 8.47 -92.71 -0.79 0.22 16 36 H 0.09 0.47 7.81 -2.39 -0.02 0.45 16 37 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 1.82 5.97 -2.39 -0.01 1.81 16 39 H 0.04 0.55 8.02 -2.39 -0.02 0.53 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.06 0.38 7.57 -2.39 -0.02 0.36 16 45 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.10 1.55 8.11 -2.39 -0.02 1.53 16 Total: -1.00 -85.47 398.80 -2.51 -87.98 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.18 Total: 11.06 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.65 Total: 2.22 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -10.12 Total: -96.03 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.09 Total: -40.66 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -85.47 -2.51 -87.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284967494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.545 kcal (2) G-P(sol) polarization free energy of solvation -85.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds