Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00395 * 2 1 4 4 H 1.48494 * 109.47324 * 270.00072 * 3 2 1 5 5 H 1.48503 * 109.47342 * 30.00174 * 3 2 1 6 6 H 1.48504 * 109.47136 * 149.99798 * 3 2 1 7 7 C 1.38806 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99431 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00141 * 179.97438 * 7 2 1 10 10 C 1.81001 * 99.99690 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46771 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00129 * 5.46198 * 11 10 9 13 13 N 1.34782 * 119.99802 * 185.45827 * 11 10 9 14 14 C 1.46498 * 119.99560 * 185.00587 * 13 11 10 15 15 C 1.53003 * 109.46879 * 185.26345 * 14 13 11 16 16 N 1.46500 * 115.54805 * 29.66581 * 15 14 13 17 17 C 1.34782 * 120.00111 * 81.58140 * 16 15 14 18 18 O 1.21281 * 119.99690 * 4.97486 * 17 16 15 19 19 C 1.50699 * 120.00340 * 184.97676 * 17 16 15 20 20 N 1.46902 * 109.47032 * 186.17981 * 19 17 16 21 21 C 1.48532 * 110.99910 * 57.73958 * 20 19 17 22 22 C 1.54933 * 103.22666 * 159.72052 * 21 20 19 23 23 C 1.54598 * 102.92243 * 322.58122 * 22 21 20 24 24 C 1.47901 * 110.99780 * 175.13430 * 20 19 17 25 25 C 1.52996 * 117.49952 * 175.33894 * 15 14 13 26 26 C 1.52994 * 60.03270 * 107.50108 * 25 15 14 27 27 H 0.97002 * 119.99469 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47671 * 60.00118 * 10 9 7 29 29 H 1.09002 * 109.46877 * 299.99346 * 10 9 7 30 30 H 0.96993 * 119.99969 * 5.00987 * 13 11 10 31 31 H 1.09002 * 109.47459 * 65.26727 * 14 13 11 32 32 H 1.08996 * 109.47511 * 305.25826 * 14 13 11 33 33 H 0.97004 * 120.00445 * 261.57669 * 16 15 14 34 34 H 1.09005 * 109.46809 * 306.17622 * 19 17 16 35 35 H 1.09002 * 109.47107 * 66.17792 * 19 17 16 36 36 H 1.09005 * 110.66775 * 278.15135 * 21 20 19 37 37 H 1.08997 * 110.66827 * 41.28308 * 21 20 19 38 38 H 1.09002 * 110.72812 * 204.22949 * 22 21 20 39 39 H 1.09000 * 110.72519 * 80.94055 * 22 21 20 40 40 H 1.09001 * 110.31370 * 263.04391 * 23 22 21 41 41 H 1.09004 * 110.31131 * 140.87289 * 23 22 21 42 42 H 1.09011 * 109.91754 * 333.50445 * 24 20 19 43 43 H 1.08996 * 109.91876 * 94.60458 * 24 20 19 44 44 H 1.09007 * 117.49444 * 215.00626 * 25 15 14 45 45 H 1.08994 * 117.50075 * 359.97438 * 25 15 14 46 46 H 1.09004 * 117.49963 * 107.49831 * 26 25 15 47 47 H 1.09000 * 117.49863 * 252.52063 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6527 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 -0.0001 10 6 4.0864 -2.9847 0.0001 11 6 5.5729 -3.2328 0.0002 12 8 6.3431 -2.3013 0.1001 13 7 6.0463 -4.4898 -0.1106 14 6 7.4851 -4.7430 -0.0005 15 6 7.7670 -6.2184 -0.2915 16 7 6.8350 -6.8694 -1.2155 17 6 6.9895 -6.7189 -2.5460 18 8 7.9506 -6.1205 -2.9809 19 6 5.9682 -7.2942 -3.4931 20 7 6.4345 -7.1277 -4.8761 21 6 7.7542 -7.7797 -5.0751 22 6 7.8277 -7.9697 -6.6110 23 6 6.3714 -8.3294 -6.9850 24 6 5.5129 -7.7838 -5.8288 25 6 9.2303 -6.6629 -0.3342 26 6 8.3433 -7.0658 0.8454 27 1 -0.4849 0.8401 -0.0004 28 1 3.6432 -3.4320 -0.8895 29 1 3.6438 -3.4315 0.8905 30 1 5.4345 -5.2268 -0.2633 31 1 7.8205 -4.5011 1.0081 32 1 8.0193 -4.1223 -0.7197 33 1 6.1067 -7.4089 -0.8698 34 1 5.8325 -8.3547 -3.2806 35 1 5.0194 -6.7735 -3.3643 36 1 8.5595 -7.1319 -4.7286 37 1 7.7880 -8.7429 -4.5662 38 1 8.5042 -8.7852 -6.8668 39 1 8.1343 -7.0450 -7.0998 40 1 6.2570 -9.4105 -7.0638 41 1 6.0920 -7.8492 -7.9228 42 1 4.9906 -8.6036 -5.3353 43 1 4.7922 -7.0590 -6.2073 44 1 9.4996 -7.4398 -1.0499 45 1 9.9922 -5.9043 -0.1553 46 1 8.0290 -8.1078 0.9060 47 1 8.5214 -6.5720 1.8007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285907823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = -32.333231 kcal Electronic energy + Delta-G solvation = -27320.872287 eV Core-core repulsion = 23438.001820 eV Total energy + Delta-G solvation = -3882.870467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66277 -39.40252 -38.66716 -37.36150 -34.04153 -33.43655 -32.42846 -32.39348 -29.89078 -29.14966 -27.15434 -26.33913 -25.54744 -23.04160 -22.21843 -21.22793 -21.01470 -20.41903 -19.95716 -18.03130 -17.47362 -17.03740 -16.45273 -16.21018 -16.11558 -15.65031 -15.31805 -15.15554 -14.92758 -14.66731 -14.40512 -13.83496 -13.72321 -13.60698 -13.43045 -13.25522 -12.88083 -12.77195 -12.55590 -12.47100 -12.02511 -11.90576 -11.84205 -11.64727 -11.42322 -11.25892 -11.15921 -10.99364 -10.91206 -10.60027 -10.52489 -9.91773 -9.84674 -9.55151 -9.44421 -8.99931 -8.91296 -8.74003 -8.48432 -6.90205 -6.28127 -3.99456 2.35624 2.51910 2.78629 2.99894 3.24083 3.34414 3.38466 3.52606 3.65686 3.68013 4.18060 4.31773 4.32700 4.34712 4.44863 4.52724 4.59596 4.66519 4.77895 4.81869 4.92191 5.00652 5.11153 5.18118 5.20743 5.23318 5.30292 5.31135 5.48756 5.50007 5.51061 5.55091 5.69995 5.71065 5.74845 5.78760 5.86046 5.87445 6.00565 6.17010 6.51618 6.53526 6.56347 7.13741 7.61741 7.95006 7.97487 8.41960 8.50976 9.18325 10.81093 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.002644 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.080151 B =10586.447061 C =12403.180894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.122 4.122 11 C 0.530 3.470 12 O -0.518 6.518 13 N -0.730 5.730 14 C 0.154 3.846 15 C 0.086 3.914 16 N -0.706 5.706 17 C 0.518 3.482 18 O -0.504 6.504 19 C 0.027 3.973 20 N -0.498 5.498 21 C 0.032 3.968 22 C -0.125 4.125 23 C -0.131 4.131 24 C 0.034 3.966 25 C -0.149 4.149 26 C -0.170 4.170 27 H 0.271 0.729 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.396 0.604 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.402 0.598 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.382 -24.507 -5.998 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.273 4.273 11 C 0.316 3.684 12 O -0.392 6.392 13 N -0.385 5.385 14 C 0.029 3.971 15 C -0.001 4.001 16 N -0.360 5.360 17 C 0.304 3.696 18 O -0.377 6.377 19 C -0.104 4.104 20 N -0.223 5.223 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.169 4.169 24 C -0.094 4.094 25 C -0.188 4.188 26 C -0.207 4.207 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.230 0.770 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.237 0.763 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.118 0.882 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.217 -21.818 -6.342 28.507 hybrid contribution -1.740 -1.923 0.286 2.609 sum 15.478 -23.741 -6.056 28.980 Atomic orbital electron populations 1.69939 1.05917 1.27760 1.48150 1.24712 0.94454 0.98980 0.93170 0.86737 0.81923 0.83250 0.79979 1.19183 1.19948 1.15875 1.22312 0.88286 0.97502 1.58724 0.89421 1.84823 1.09223 0.99982 1.97403 1.23260 0.93967 1.04446 1.05641 1.20272 0.90587 0.82107 0.75403 1.90705 1.58792 1.42173 1.47548 1.45769 1.07661 1.09013 1.76080 1.21013 0.82506 0.91675 1.01936 1.20793 0.91919 0.92103 0.95326 1.45294 1.32351 1.53203 1.05176 1.20511 0.86875 0.80045 0.82214 1.90705 1.30662 1.39797 1.76499 1.22220 0.98572 1.00142 0.89471 1.64625 1.02711 1.53182 1.01778 1.23415 0.93127 0.97117 0.95853 1.22495 0.96216 1.01964 0.95596 1.22397 0.95328 1.00575 0.98625 1.22934 0.95703 0.97417 0.93297 1.23197 0.92245 1.03403 0.99917 1.23506 1.02845 1.00442 0.93932 0.91952 0.88831 0.88361 0.77008 0.90709 0.90282 0.76287 0.92075 0.87176 0.87915 0.94592 0.91168 0.90497 0.91575 0.90779 0.93710 0.89793 0.88248 0.87609 0.88176 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 22.01 27.74 -169.99 -4.71 17.30 16 4 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 11 C 0.53 9.69 7.83 -10.98 -0.09 9.60 16 12 O -0.52 -11.56 15.85 5.56 0.09 -11.47 16 13 N -0.73 -9.59 5.40 -60.29 -0.33 -9.92 16 14 C 0.15 1.84 5.95 -4.04 -0.02 1.82 16 15 C 0.09 0.75 2.11 -131.78 -0.28 0.47 16 16 N -0.71 -5.30 4.19 -47.57 -0.20 -5.50 16 17 C 0.52 5.23 7.38 -10.98 -0.08 5.15 16 18 O -0.50 -7.09 13.70 5.56 0.08 -7.01 16 19 C 0.03 0.22 5.35 -4.98 -0.03 0.20 16 20 N -0.50 -4.98 5.14 -231.88 -1.19 -6.17 16 21 C 0.03 0.30 5.54 -1.90 -0.01 0.29 16 22 C -0.12 -0.96 7.06 -24.87 -0.18 -1.14 16 23 C -0.13 -0.89 6.93 -25.37 -0.18 -1.07 16 24 C 0.03 0.27 6.70 -2.75 -0.02 0.25 16 25 C -0.15 -1.19 9.49 -26.74 -0.25 -1.44 16 26 C -0.17 -1.05 10.11 -26.70 -0.27 -1.32 16 27 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 29 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 30 H 0.40 4.05 7.59 -40.82 -0.31 3.74 16 31 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 32 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 33 H 0.40 1.80 8.83 -40.82 -0.36 1.44 16 34 H 0.06 0.35 7.96 -51.93 -0.41 -0.06 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.20 6.35 -51.93 -0.33 0.87 16 37 H 0.04 0.30 8.02 -51.93 -0.42 -0.11 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.04 0.29 7.66 -51.92 -0.40 -0.11 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.11 0.62 8.03 -51.93 -0.42 0.20 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -36.91 397.95 -10.15 -47.06 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.70 Total: 2.63 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.96 Total: -1.41 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.94 Total: -47.49 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.16 Total: -18.49 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.91 -10.15 -47.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285907823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.730 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds