Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00395 * 2 1 4 4 H 1.48494 * 109.47324 * 270.00072 * 3 2 1 5 5 H 1.48503 * 109.47342 * 30.00174 * 3 2 1 6 6 H 1.48504 * 109.47136 * 149.99798 * 3 2 1 7 7 C 1.38806 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99431 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00141 * 179.97438 * 7 2 1 10 10 C 1.81001 * 99.99690 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46771 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00129 * 5.46198 * 11 10 9 13 13 N 1.34782 * 119.99802 * 185.45827 * 11 10 9 14 14 C 1.46498 * 119.99560 * 185.00587 * 13 11 10 15 15 C 1.53003 * 109.46879 * 185.26345 * 14 13 11 16 16 N 1.46500 * 115.54805 * 29.66581 * 15 14 13 17 17 C 1.34782 * 120.00111 * 81.58140 * 16 15 14 18 18 O 1.21281 * 119.99690 * 4.97486 * 17 16 15 19 19 C 1.50699 * 120.00340 * 184.97676 * 17 16 15 20 20 N 1.46902 * 109.47032 * 186.17981 * 19 17 16 21 21 C 1.48532 * 110.99910 * 57.73958 * 20 19 17 22 22 C 1.54933 * 103.22666 * 159.72052 * 21 20 19 23 23 C 1.54598 * 102.92243 * 322.58122 * 22 21 20 24 24 C 1.47901 * 110.99780 * 175.13430 * 20 19 17 25 25 C 1.52996 * 117.49952 * 175.33894 * 15 14 13 26 26 C 1.52994 * 60.03270 * 107.50108 * 25 15 14 27 27 H 0.97002 * 119.99469 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47671 * 60.00118 * 10 9 7 29 29 H 1.09002 * 109.46877 * 299.99346 * 10 9 7 30 30 H 0.96993 * 119.99969 * 5.00987 * 13 11 10 31 31 H 1.09002 * 109.47459 * 65.26727 * 14 13 11 32 32 H 1.08996 * 109.47511 * 305.25826 * 14 13 11 33 33 H 0.97004 * 120.00445 * 261.57669 * 16 15 14 34 34 H 1.09005 * 109.46809 * 306.17622 * 19 17 16 35 35 H 1.09002 * 109.47107 * 66.17792 * 19 17 16 36 36 H 1.09005 * 110.66775 * 278.15135 * 21 20 19 37 37 H 1.08997 * 110.66827 * 41.28308 * 21 20 19 38 38 H 1.09002 * 110.72812 * 204.22949 * 22 21 20 39 39 H 1.09000 * 110.72519 * 80.94055 * 22 21 20 40 40 H 1.09001 * 110.31370 * 263.04391 * 23 22 21 41 41 H 1.09004 * 110.31131 * 140.87289 * 23 22 21 42 42 H 1.09011 * 109.91754 * 333.50445 * 24 20 19 43 43 H 1.08996 * 109.91876 * 94.60458 * 24 20 19 44 44 H 1.09007 * 117.49444 * 215.00626 * 25 15 14 45 45 H 1.08994 * 117.50075 * 359.97438 * 25 15 14 46 46 H 1.09004 * 117.49963 * 107.49831 * 26 25 15 47 47 H 1.09000 * 117.49863 * 252.52063 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6527 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 -0.0001 10 6 4.0864 -2.9847 0.0001 11 6 5.5729 -3.2328 0.0002 12 8 6.3431 -2.3013 0.1001 13 7 6.0463 -4.4898 -0.1106 14 6 7.4851 -4.7430 -0.0005 15 6 7.7670 -6.2184 -0.2915 16 7 6.8350 -6.8694 -1.2155 17 6 6.9895 -6.7189 -2.5460 18 8 7.9506 -6.1205 -2.9809 19 6 5.9682 -7.2942 -3.4931 20 7 6.4345 -7.1277 -4.8761 21 6 7.7542 -7.7797 -5.0751 22 6 7.8277 -7.9697 -6.6110 23 6 6.3714 -8.3294 -6.9850 24 6 5.5129 -7.7838 -5.8288 25 6 9.2303 -6.6629 -0.3342 26 6 8.3433 -7.0658 0.8454 27 1 -0.4849 0.8401 -0.0004 28 1 3.6432 -3.4320 -0.8895 29 1 3.6438 -3.4315 0.8905 30 1 5.4345 -5.2268 -0.2633 31 1 7.8205 -4.5011 1.0081 32 1 8.0193 -4.1223 -0.7197 33 1 6.1067 -7.4089 -0.8698 34 1 5.8325 -8.3547 -3.2806 35 1 5.0194 -6.7735 -3.3643 36 1 8.5595 -7.1319 -4.7286 37 1 7.7880 -8.7429 -4.5662 38 1 8.5042 -8.7852 -6.8668 39 1 8.1343 -7.0450 -7.0998 40 1 6.2570 -9.4105 -7.0638 41 1 6.0920 -7.8492 -7.9228 42 1 4.9906 -8.6036 -5.3353 43 1 4.7922 -7.0590 -6.2073 44 1 9.4996 -7.4398 -1.0499 45 1 9.9922 -5.9043 -0.1553 46 1 8.0290 -8.1078 0.9060 47 1 8.5214 -6.5720 1.8007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285907823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = -60.932210 kcal Electronic energy + Delta-G solvation = -27322.112432 eV Core-core repulsion = 23438.001820 eV Total energy + Delta-G solvation = -3884.110612 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46455 -40.57724 -39.52765 -38.15690 -35.30492 -34.67191 -34.17644 -33.00757 -31.37973 -29.76712 -28.03051 -27.78389 -27.25422 -23.64976 -22.88946 -21.91172 -21.79576 -21.63023 -20.74821 -19.91076 -18.36594 -17.97769 -17.83806 -17.12914 -16.91256 -16.88946 -16.65299 -16.35655 -16.21465 -15.55867 -15.43606 -15.12322 -14.92026 -14.73740 -14.53470 -14.48007 -14.18762 -13.61328 -13.51026 -13.35102 -13.22867 -13.13535 -13.02368 -12.67530 -12.51388 -12.42466 -12.23376 -12.04499 -11.89026 -11.80628 -11.48505 -11.29611 -11.17749 -11.03586 -10.72241 -10.54070 -10.21819 -10.12577 -9.37783 -9.00588 -8.52057 -6.22608 0.96818 1.30907 1.45477 1.51144 1.55356 1.60736 1.86370 2.20594 2.25639 2.67087 2.72947 2.86375 3.04141 3.46344 3.67554 3.72970 3.78831 3.85150 3.92955 4.02172 4.08027 4.20177 4.27657 4.30473 4.39934 4.43551 4.50503 4.58826 4.61793 4.68730 4.71727 4.74962 4.92532 4.96902 4.98334 5.08720 5.18463 5.19026 5.27228 5.29079 5.55194 5.70717 5.89032 5.94201 6.11199 6.40426 6.53875 6.93543 7.14126 7.28751 8.60217 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.002644 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.080151 B =10586.447061 C =12403.180894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.526 4.526 8 H 0.065 0.935 9 S -0.180 6.180 10 C -0.108 4.108 11 C 0.533 3.467 12 O -0.564 6.564 13 N -0.704 5.704 14 C 0.156 3.844 15 C 0.071 3.929 16 N -0.690 5.690 17 C 0.513 3.487 18 O -0.551 6.551 19 C 0.028 3.972 20 N -0.530 5.530 21 C 0.037 3.963 22 C -0.124 4.124 23 C -0.127 4.127 24 C 0.033 3.967 25 C -0.158 4.158 26 C -0.134 4.134 27 H 0.277 0.723 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.413 0.587 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.420 0.580 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.123 0.877 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.561 -26.932 -5.422 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.673 4.673 8 H 0.083 0.917 9 S 0.047 5.953 10 C -0.259 4.259 11 C 0.319 3.681 12 O -0.442 6.442 13 N -0.358 5.358 14 C 0.030 3.970 15 C -0.017 4.017 16 N -0.345 5.345 17 C 0.300 3.700 18 O -0.427 6.427 19 C -0.103 4.103 20 N -0.255 5.255 21 C -0.091 4.091 22 C -0.162 4.162 23 C -0.165 4.165 24 C -0.094 4.094 25 C -0.197 4.197 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.137 0.863 30 H 0.250 0.750 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.258 0.742 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.119 0.881 46 H 0.141 0.859 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.357 -24.322 -5.747 30.428 hybrid contribution -1.747 -1.314 0.102 2.189 sum 15.610 -25.637 -5.644 30.541 Atomic orbital electron populations 1.70008 1.07193 1.28994 1.49188 1.25525 0.95260 1.02133 0.92964 0.85905 0.80730 0.79845 0.80143 1.18890 1.18216 1.16171 1.22434 0.90009 0.96747 1.58135 0.91672 1.84805 1.06711 1.06218 1.97581 1.23237 0.95439 0.99650 1.07532 1.20040 0.89614 0.83126 0.75351 1.90696 1.59475 1.43902 1.50166 1.45505 1.08769 1.07774 1.73753 1.21050 0.80797 0.93655 1.01465 1.20634 0.92784 0.90793 0.97537 1.45156 1.32495 1.52579 1.04302 1.20975 0.86580 0.79326 0.83105 1.90701 1.32621 1.41940 1.77406 1.22280 0.97804 1.01910 0.88259 1.64545 1.03365 1.54493 1.03095 1.23267 0.92236 0.96721 0.96831 1.22493 0.97423 1.01859 0.94471 1.22402 0.94181 1.01639 0.98306 1.22966 0.95430 0.97688 0.93338 1.23200 0.91793 1.03353 1.01318 1.23606 0.99417 1.01053 0.93089 0.91355 0.87037 0.86310 0.74959 0.89798 0.93744 0.74151 0.88957 0.86481 0.90970 0.93498 0.89595 0.92052 0.89804 0.90640 0.91893 0.90584 0.88705 0.88105 0.85878 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.74 13.97 21.65 0.30 -55.44 16 2 C 0.05 2.75 5.50 84.86 0.47 3.22 16 3 Si 0.91 45.48 27.74 68.60 1.90 47.38 16 4 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.24 -11.90 6.74 99.48 0.67 -11.23 16 7 C -0.53 -30.58 10.04 67.96 0.68 -29.90 16 8 H 0.07 3.96 8.03 -2.91 -0.02 3.93 16 9 S -0.18 -9.20 18.55 -56.49 -1.05 -10.25 16 10 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 11 C 0.53 18.92 7.83 87.66 0.69 19.61 16 12 O -0.56 -25.24 15.85 -3.02 -0.05 -25.29 16 13 N -0.70 -17.26 5.40 -463.06 -2.50 -19.76 16 14 C 0.16 3.56 5.95 86.38 0.51 4.08 16 15 C 0.07 1.09 2.11 3.63 0.01 1.09 16 16 N -0.69 -8.74 4.19 -422.81 -1.77 -10.52 16 17 C 0.51 9.78 7.38 87.66 0.65 10.43 16 18 O -0.55 -15.78 13.70 -3.03 -0.04 -15.82 16 19 C 0.03 0.41 5.35 85.56 0.46 0.87 16 20 N -0.53 -10.14 5.14 -887.54 -4.56 -14.70 16 21 C 0.04 0.68 5.54 86.65 0.48 1.16 16 22 C -0.12 -1.84 7.06 31.80 0.22 -1.62 16 23 C -0.13 -1.53 6.93 31.48 0.22 -1.31 16 24 C 0.03 0.46 6.70 86.45 0.58 1.04 16 25 C -0.16 -2.31 9.49 30.59 0.29 -2.02 16 26 C -0.13 -1.20 10.11 30.62 0.31 -0.90 16 27 H 0.28 15.60 8.31 -92.71 -0.77 14.82 16 28 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 29 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 30 H 0.41 7.27 7.59 -92.71 -0.70 6.57 16 31 H 0.08 1.79 7.88 -2.39 -0.02 1.78 16 32 H 0.04 1.35 8.09 -2.39 -0.02 1.33 16 33 H 0.42 2.24 8.83 -92.70 -0.82 1.42 16 34 H 0.09 0.75 7.96 -2.38 -0.02 0.73 16 35 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.78 6.35 -2.38 -0.02 1.76 16 37 H 0.05 0.72 8.02 -2.39 -0.02 0.70 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.64 7.66 -2.38 -0.02 0.62 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.12 0.90 8.03 -2.39 -0.02 0.88 16 Total: -1.00 -82.55 397.95 -2.34 -84.89 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.57 Total: 17.39 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.00 Total: 2.12 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -8.53 Total: -100.41 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.09 Total: -41.11 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.05 Total: -10.25 kcal Total: -82.55 -2.34 -84.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285907823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.956 kcal (2) G-P(sol) polarization free energy of solvation -82.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds