Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00362 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72203 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72051 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72086 * 3 2 1 7 7 C 1.38803 * 119.99820 * 179.72030 * 2 1 3 8 8 H 1.08001 * 120.00210 * 0.28248 * 7 2 1 9 9 S 1.76201 * 120.00168 * 180.27733 * 7 2 1 10 10 C 1.80999 * 100.00238 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47143 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00265 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00194 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00259 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.50275 * 35.07840 * 14 13 11 16 16 C 1.53120 * 109.50624 * 274.99547 * 14 13 11 17 17 C 1.53115 * 109.16354 * 182.40558 * 16 14 13 18 18 C 1.53033 * 109.27835 * 57.65492 * 17 16 14 19 19 N 1.46853 * 109.52330 * 300.82091 * 18 17 16 20 20 C 1.46903 * 110.99847 * 185.83780 * 19 18 17 21 21 C 1.50708 * 109.46922 * 66.04658 * 20 19 18 22 22 O 1.21273 * 119.99876 * 359.97438 * 21 20 19 23 23 N 1.34779 * 119.99743 * 179.97438 * 21 20 19 24 24 C 1.46498 * 119.99711 * 180.02562 * 23 21 20 25 25 C 1.52999 * 117.49564 * 223.74574 * 24 23 21 26 26 C 1.53009 * 117.49589 * 155.08710 * 24 23 21 27 27 C 1.46845 * 111.19731 * 61.74496 * 19 18 17 28 28 H 0.97004 * 119.99711 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47342 * 300.00378 * 10 9 7 30 30 H 1.09001 * 109.47104 * 59.99990 * 10 9 7 31 31 H 0.97010 * 119.99644 * 359.97438 * 13 11 10 32 32 H 1.08996 * 109.52492 * 302.31514 * 16 14 13 33 33 H 1.09003 * 109.51460 * 62.49847 * 16 14 13 34 34 H 1.08997 * 109.50285 * 177.59951 * 17 16 14 35 35 H 1.09008 * 109.49926 * 297.67420 * 17 16 14 36 36 H 1.08996 * 109.46263 * 60.83644 * 18 17 16 37 37 H 1.09005 * 109.46268 * 180.80500 * 18 17 16 38 38 H 1.08997 * 109.47075 * 186.04710 * 20 19 18 39 39 H 1.09001 * 109.46909 * 306.04985 * 20 19 18 40 40 H 0.96999 * 119.99798 * 359.97438 * 23 21 20 41 41 H 1.08997 * 115.54957 * 9.42105 * 24 23 21 42 42 H 1.08997 * 117.50361 * 359.97438 * 25 24 23 43 43 H 1.08999 * 117.49537 * 145.02724 * 25 24 23 44 44 H 1.08992 * 117.49462 * 214.97806 * 26 24 23 45 45 H 1.08997 * 117.49488 * 359.97404 * 26 24 23 46 46 H 1.08994 * 109.46299 * 178.23997 * 27 19 18 47 47 H 1.09004 * 109.46495 * 58.27080 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.5037 2.0429 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0102 -1.2021 0.0059 8 1 1.4702 -2.1374 0.0058 9 16 3.7722 -1.2022 0.0133 10 6 4.0865 -2.9846 0.0182 11 6 5.5729 -3.2326 0.0255 12 8 6.3439 -2.2965 0.0268 13 7 6.0455 -4.4948 0.0296 14 6 7.4905 -4.7359 0.0362 15 1 7.9853 -3.9655 0.6275 16 6 8.0216 -4.6985 -1.3994 17 6 9.5206 -5.0106 -1.3890 18 6 9.7476 -6.3773 -0.7390 19 7 9.2231 -6.3616 0.6326 20 6 9.5467 -7.6109 1.3343 21 6 11.0388 -7.7097 1.5220 22 8 11.7614 -6.8265 1.1113 23 7 11.5701 -8.7794 2.1464 24 6 13.0205 -8.8751 2.3294 25 6 13.6803 -10.2265 2.0478 26 6 13.5311 -9.7328 3.4891 27 6 7.7763 -6.1106 0.6450 28 1 -0.4850 0.8401 -0.0004 29 1 3.6398 -3.4299 0.9071 30 1 3.6473 -3.4335 -0.8728 31 1 5.4288 -5.2437 0.0282 32 1 7.4988 -5.4421 -2.0008 33 1 7.8589 -3.7070 -1.8221 34 1 9.8959 -5.0274 -2.4122 35 1 10.0479 -4.2444 -0.8206 36 1 9.2314 -7.1443 -1.3164 37 1 10.8152 -6.5963 -0.7171 38 1 9.0568 -7.6182 2.3079 39 1 9.1977 -8.4592 0.7455 40 1 10.9921 -9.4856 2.4752 41 1 13.5859 -7.9772 2.0804 42 1 13.0354 -11.0444 1.7268 43 1 14.6802 -10.2175 1.6139 44 1 14.4328 -9.3992 4.0026 45 1 12.7879 -10.2254 4.1160 46 1 7.4122 -6.1359 1.6720 47 1 7.2694 -6.8789 0.0611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316938953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = -41.118210 kcal Electronic energy + Delta-G solvation = -26591.875179 eV Core-core repulsion = 22708.623767 eV Total energy + Delta-G solvation = -3883.251413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.58742 -39.69968 -38.41688 -37.35732 -34.73154 -33.46499 -32.82677 -32.42722 -30.57249 -28.61242 -27.81529 -25.59996 -23.92133 -23.09664 -22.96575 -22.20153 -21.05078 -20.35727 -20.06935 -17.95959 -17.55583 -17.15952 -16.45444 -16.38840 -15.92953 -15.52989 -15.11022 -15.02019 -14.95797 -14.82210 -14.40557 -14.14304 -13.89831 -13.59402 -13.47790 -13.25352 -13.14973 -12.79841 -12.77351 -12.37084 -12.17148 -12.11832 -11.83351 -11.51169 -11.25404 -11.11737 -11.04024 -10.99455 -10.90376 -10.77588 -10.58650 -10.09481 -9.83750 -9.46984 -9.26601 -9.00255 -8.93931 -8.69013 -8.48123 -6.90119 -6.27929 -3.99382 2.15977 2.40270 2.77736 3.00303 3.23396 3.34729 3.35501 3.52397 3.55504 3.81448 4.19509 4.24125 4.34661 4.37504 4.42270 4.48142 4.64180 4.71182 4.78408 4.80379 4.89877 5.05191 5.05899 5.07038 5.11356 5.23562 5.25529 5.32027 5.37598 5.44019 5.49171 5.50463 5.73169 5.74464 5.80070 5.97031 5.99520 6.02573 6.17127 6.24257 6.47001 6.59157 6.75860 7.00287 7.63877 7.80659 7.95119 8.42373 8.53012 9.18480 10.81281 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032423 B = 0.001689 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.381205 B =16571.287106 C =16731.651302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.734 5.734 14 C 0.152 3.848 15 H 0.098 0.902 16 C -0.133 4.133 17 C -0.111 4.111 18 C 0.050 3.950 19 N -0.517 5.517 20 C 0.039 3.961 21 C 0.518 3.482 22 O -0.513 6.513 23 N -0.708 5.708 24 C 0.081 3.919 25 C -0.194 4.194 26 C -0.190 4.190 27 C 0.053 3.947 28 H 0.270 0.730 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.397 0.603 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.029 0.971 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.401 0.599 41 H 0.138 0.862 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.935 -25.590 3.467 35.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.387 5.387 14 C 0.046 3.954 15 H 0.116 0.884 16 C -0.172 4.172 17 C -0.149 4.149 18 C -0.077 4.077 19 N -0.242 5.242 20 C -0.093 4.093 21 C 0.304 3.696 22 O -0.386 6.386 23 N -0.359 5.359 24 C -0.025 4.025 25 C -0.233 4.233 26 C -0.228 4.228 27 C -0.076 4.076 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.231 0.769 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.235 0.765 41 H 0.156 0.844 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.101 0.899 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 25.778 -22.840 3.406 34.608 hybrid contribution -1.873 -1.918 -0.224 2.690 sum 23.905 -24.758 3.181 34.562 Atomic orbital electron populations 1.69939 1.05925 1.27751 1.48121 1.24708 0.94442 0.98959 0.93158 0.86737 0.81912 0.83259 0.79960 1.19213 1.19948 1.15890 1.22325 0.88341 0.97517 1.58758 0.89424 1.84811 1.09180 1.00066 1.97417 1.23280 0.94056 1.04378 1.05749 1.20254 0.90505 0.82284 0.75101 1.90708 1.58697 1.42124 1.47432 1.45963 1.07041 1.08070 1.77673 1.20794 0.81022 0.96873 0.96666 0.88365 1.22019 0.95745 1.02775 0.96638 1.21494 0.95971 0.96998 1.00472 1.22333 1.01526 0.97269 0.86596 1.61447 1.12929 1.32376 1.17425 1.21922 0.92935 0.92912 1.01508 1.20577 0.90625 0.81155 0.77255 1.90705 1.62078 1.38169 1.47692 1.45390 1.06571 1.23628 1.60352 1.21594 0.81813 0.96424 1.02631 1.23444 1.02861 0.98197 0.98810 1.23393 1.03751 1.03937 0.91720 1.22298 0.87338 0.96398 1.01533 0.91960 0.88495 0.88557 0.76921 0.92206 0.90719 0.91188 0.90508 0.95320 0.88855 0.87489 0.91703 0.76498 0.84400 0.88531 0.87955 0.87804 0.88425 0.89865 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.93 27.74 -169.99 -4.72 17.21 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.23 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 11 C 0.53 9.42 7.81 -10.99 -0.09 9.33 16 12 O -0.52 -11.20 15.53 5.56 0.09 -11.11 16 13 N -0.73 -9.21 5.08 -53.73 -0.27 -9.49 16 14 C 0.15 1.80 2.62 -67.85 -0.18 1.62 16 15 H 0.10 1.46 7.58 -51.93 -0.39 1.07 16 16 C -0.13 -1.53 5.58 -26.61 -0.15 -1.68 16 17 C -0.11 -1.16 6.09 -26.66 -0.16 -1.33 16 18 C 0.05 0.48 5.11 -3.83 -0.02 0.46 16 19 N -0.52 -4.82 4.39 -236.10 -1.04 -5.85 16 20 C 0.04 0.25 5.45 -4.97 -0.03 0.22 16 21 C 0.52 4.27 7.50 -10.98 -0.08 4.19 16 22 O -0.51 -6.39 13.91 5.56 0.08 -6.31 16 23 N -0.71 -3.82 5.57 -53.80 -0.30 -4.12 16 24 C 0.08 0.47 6.43 -67.93 -0.44 0.03 16 25 C -0.19 -0.78 10.46 -26.69 -0.28 -1.06 16 26 C -0.19 -0.73 10.46 -26.68 -0.28 -1.00 16 27 C 0.05 0.46 4.93 -3.83 -0.02 0.44 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 30 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 31 H 0.40 3.74 8.60 -40.82 -0.35 3.39 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.09 1.01 5.80 -51.93 -0.30 0.71 16 38 H 0.11 0.50 7.98 -51.93 -0.41 0.08 16 39 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 40 H 0.40 1.00 8.83 -40.82 -0.36 0.64 16 41 H 0.14 1.04 7.40 -51.93 -0.38 0.66 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.66 8.01 -51.93 -0.42 0.25 16 47 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -36.48 396.19 -10.38 -46.87 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.69 Total: 1.26 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.28 Total: -2.99 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.83 Total: -45.31 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.16 Total: -17.43 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.48 -10.38 -46.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316938953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.748 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds