Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46911 * 299.99827 * 3 2 1 6 6 H 1.48506 * 109.47215 * 59.99585 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.50234 * 324.92556 * 14 13 11 16 16 C 1.53123 * 109.49980 * 85.00236 * 14 13 11 17 17 C 1.53124 * 109.15870 * 177.59910 * 16 14 13 18 18 C 1.53036 * 109.27666 * 302.34357 * 17 16 14 19 19 N 1.46855 * 109.52315 * 59.18145 * 18 17 16 20 20 C 1.46899 * 110.99868 * 174.15606 * 19 18 17 21 21 C 1.50697 * 109.47415 * 293.95519 * 20 19 18 22 22 O 1.21281 * 119.99797 * 0.02562 * 21 20 19 23 23 N 1.34777 * 119.99772 * 180.02562 * 21 20 19 24 24 C 1.46503 * 119.99629 * 180.02562 * 23 21 20 25 25 C 1.52998 * 117.49726 * 223.62097 * 24 23 21 26 26 C 1.53001 * 60.00203 * 252.50990 * 25 24 23 27 27 C 1.46838 * 111.19692 * 298.25626 * 19 18 17 28 28 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 31 31 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.52368 * 297.50073 * 16 14 13 33 33 H 1.08993 * 109.52242 * 57.63116 * 16 14 13 34 34 H 1.09001 * 109.50131 * 62.28757 * 17 16 14 35 35 H 1.08994 * 109.50034 * 182.40757 * 17 16 14 36 36 H 1.09005 * 109.46096 * 179.19094 * 18 17 16 37 37 H 1.08999 * 109.46883 * 299.17655 * 18 17 16 38 38 H 1.09000 * 109.46761 * 53.95673 * 20 19 18 39 39 H 1.08997 * 109.46835 * 173.95652 * 20 19 18 40 40 H 0.96994 * 120.00538 * 359.97438 * 23 21 20 41 41 H 1.09002 * 115.55281 * 9.32749 * 24 23 21 42 42 H 1.08998 * 117.50255 * 0.02562 * 25 24 23 43 43 H 1.09002 * 117.49846 * 145.02337 * 25 24 23 44 44 H 1.08993 * 117.50003 * 252.51179 * 26 25 24 45 45 H 1.09000 * 117.49469 * 107.48786 * 26 25 24 46 46 H 1.09000 * 109.46737 * 301.72264 * 27 19 18 47 47 H 1.08996 * 109.46232 * 181.75455 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7914 -5.5023 0.0056 13 7 2.8444 -6.3430 0.0022 14 6 2.3308 -7.7150 0.0024 15 1 1.4155 -7.7609 0.5926 16 6 2.0343 -8.1499 -1.4355 17 6 1.5551 -9.6043 -1.4319 18 6 2.6246 -10.4870 -0.7847 19 7 2.8718 -10.0309 0.5892 20 6 3.7912 -10.9389 1.2879 21 6 3.1305 -12.2812 1.4692 22 8 2.0048 -12.4636 1.0565 23 7 3.7907 -13.2788 2.0899 24 6 3.1486 -14.5839 2.2656 25 6 3.2957 -15.2659 3.6272 26 6 4.0588 -15.8046 2.4154 27 6 3.3778 -8.6526 0.6081 28 1 -0.4850 0.8400 -0.0004 29 1 3.1240 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8875 31 1 3.8012 -6.1834 0.0032 32 1 1.2574 -7.5115 -1.8563 33 1 2.9401 -8.0654 -2.0358 34 1 0.6278 -9.6805 -0.8642 35 1 1.3832 -9.9332 -2.4567 36 1 2.2804 -11.5211 -0.7675 37 1 3.5476 -10.4209 -1.3606 38 1 4.7010 -11.0582 0.6996 39 1 4.0414 -10.5224 2.2636 40 1 4.6912 -13.1331 2.4197 41 1 2.2074 -14.7203 1.7331 42 1 3.8698 -14.7435 4.3924 43 1 2.4510 -15.8511 3.9908 44 1 3.7162 -16.7440 1.9818 45 1 5.1353 -15.6366 2.3833 46 1 4.2972 -8.5951 0.0255 47 1 3.5806 -8.3542 1.6366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316938954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = -41.275486 kcal Electronic energy + Delta-G solvation = -26535.669154 eV Core-core repulsion = 22652.410922 eV Total energy + Delta-G solvation = -3883.258232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.54974 -39.61864 -38.34199 -37.32386 -34.65017 -33.43133 -32.77123 -32.41479 -30.46866 -28.51642 -27.75395 -25.47062 -23.87382 -23.02968 -22.94042 -22.16951 -21.01912 -20.26018 -19.99846 -17.91774 -17.53586 -17.12936 -16.39534 -16.28454 -15.90061 -15.48985 -14.99586 -14.93107 -14.79515 -14.77517 -14.45294 -14.12987 -13.82085 -13.63077 -13.42180 -13.14976 -13.09817 -12.80480 -12.51302 -12.31142 -12.14029 -11.99277 -11.79746 -11.45389 -11.08744 -11.06450 -11.00610 -10.98713 -10.84708 -10.75034 -10.71056 -10.06791 -9.78672 -9.33977 -9.23990 -9.06434 -8.85145 -8.64652 -8.20693 -6.47914 -6.20327 -3.90570 2.18723 2.43644 3.01511 3.13553 3.22320 3.27590 3.32059 3.37881 3.54220 3.89251 4.21606 4.21878 4.27042 4.39679 4.44428 4.53254 4.69179 4.77868 4.82211 4.94532 5.06929 5.10785 5.11673 5.14867 5.18352 5.25975 5.33501 5.39344 5.46995 5.51417 5.52058 5.67926 5.77596 5.81602 5.91702 6.02074 6.03760 6.15664 6.23622 6.30196 6.53531 6.64740 6.82083 7.02906 7.61102 7.74886 7.83375 8.36707 8.66353 9.25045 10.87150 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032172 B = 0.001637 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.118764 B =17102.477038 C =17398.468588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.736 5.736 14 C 0.152 3.848 15 H 0.098 0.902 16 C -0.133 4.133 17 C -0.111 4.111 18 C 0.050 3.950 19 N -0.517 5.517 20 C 0.039 3.961 21 C 0.518 3.482 22 O -0.512 6.512 23 N -0.708 5.708 24 C 0.082 3.918 25 C -0.194 4.194 26 C -0.191 4.191 27 C 0.053 3.947 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.396 0.604 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.028 0.972 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.401 0.599 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.039 0.961 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.434 -30.471 3.288 33.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.387 6.387 13 N -0.390 5.390 14 C 0.046 3.954 15 H 0.116 0.884 16 C -0.172 4.172 17 C -0.149 4.149 18 C -0.077 4.077 19 N -0.242 5.242 20 C -0.093 4.093 21 C 0.304 3.696 22 O -0.386 6.386 23 N -0.360 5.360 24 C -0.025 4.025 25 C -0.232 4.232 26 C -0.229 4.229 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.229 0.771 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.235 0.765 41 H 0.156 0.844 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.057 0.943 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.965 -30.789 3.215 32.841 hybrid contribution 3.833 1.394 -0.149 4.082 sum 14.798 -29.394 3.066 33.052 Atomic orbital electron populations 1.70025 1.05947 1.27335 1.46945 1.24991 0.95012 0.99012 0.94566 0.86123 0.79566 0.81935 0.77895 1.19647 1.20576 1.20575 1.22914 0.94937 0.91701 1.58816 0.90904 1.85424 1.04912 0.96282 1.96697 1.23535 1.06549 0.95443 1.04852 1.20283 0.86562 0.86171 0.75006 1.90709 1.15318 1.85487 1.47207 1.46001 1.09778 1.05250 1.77939 1.20781 0.97825 0.80175 0.96598 0.88378 1.22021 1.01796 0.96684 0.96678 1.21498 0.99201 0.93800 1.00450 1.22333 0.97764 1.01032 0.86561 1.61442 1.44719 1.00629 1.17377 1.21916 0.94402 0.91411 1.01531 1.20582 0.86430 0.85381 0.77233 1.90709 1.18177 1.82062 1.47651 1.45390 1.18843 1.11148 1.60583 1.21587 0.99066 0.81538 1.00265 1.23429 1.03605 1.04076 0.92111 1.23382 0.98718 0.98228 1.02555 1.22295 0.95933 0.87791 1.01502 0.92237 0.89258 0.89305 0.77107 0.90679 0.92284 0.90476 0.91211 0.88892 0.95364 0.91738 0.87525 0.76514 0.84416 0.88453 0.87924 0.87851 0.88500 0.94253 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 9.99 7.81 -10.98 -0.09 9.90 16 12 O -0.51 -11.81 15.52 5.56 0.09 -11.72 16 13 N -0.74 -9.80 5.08 -53.73 -0.27 -10.08 16 14 C 0.15 1.90 2.62 -67.85 -0.18 1.72 16 15 H 0.10 1.53 7.58 -51.93 -0.39 1.14 16 16 C -0.13 -1.61 5.58 -26.60 -0.15 -1.76 16 17 C -0.11 -1.22 6.09 -26.65 -0.16 -1.38 16 18 C 0.05 0.50 5.11 -3.83 -0.02 0.48 16 19 N -0.52 -5.02 4.39 -236.12 -1.04 -6.06 16 20 C 0.04 0.26 5.45 -4.98 -0.03 0.23 16 21 C 0.52 4.41 7.50 -10.99 -0.08 4.33 16 22 O -0.51 -6.54 13.91 5.56 0.08 -6.46 16 23 N -0.71 -3.98 5.57 -53.80 -0.30 -4.28 16 24 C 0.08 0.48 6.43 -67.93 -0.44 0.05 16 25 C -0.19 -0.86 10.46 -26.73 -0.28 -1.14 16 26 C -0.19 -0.73 10.46 -26.73 -0.28 -1.01 16 27 C 0.05 0.49 4.93 -3.84 -0.02 0.47 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 31 H 0.40 3.99 8.60 -40.82 -0.35 3.64 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.03 5.80 -51.93 -0.30 0.73 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.06 0.31 8.12 -51.93 -0.42 -0.12 16 39 H 0.11 0.53 7.98 -51.93 -0.41 0.12 16 40 H 0.40 1.08 8.83 -40.82 -0.36 0.72 16 41 H 0.14 1.06 7.40 -51.93 -0.38 0.67 16 42 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.70 8.01 -51.93 -0.42 0.28 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -36.92 398.87 -10.90 -47.82 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.66 Total: 1.72 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.30 Total: -3.98 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.88 Total: -45.97 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.16 Total: -18.18 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.92 -10.90 -47.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316938954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.545 kcal (2) G-P(sol) polarization free energy of solvation -36.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds