Wall clock time and date at job start Sat Apr 11 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46911 * 299.99827 * 3 2 1 6 6 H 1.48506 * 109.47215 * 59.99585 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.50234 * 324.92556 * 14 13 11 16 16 C 1.53123 * 109.49980 * 85.00236 * 14 13 11 17 17 C 1.53124 * 109.15870 * 177.59910 * 16 14 13 18 18 C 1.53036 * 109.27666 * 302.34357 * 17 16 14 19 19 N 1.46855 * 109.52315 * 59.18145 * 18 17 16 20 20 C 1.46899 * 110.99868 * 174.15606 * 19 18 17 21 21 C 1.50697 * 109.47415 * 293.95519 * 20 19 18 22 22 O 1.21281 * 119.99797 * 0.02562 * 21 20 19 23 23 N 1.34777 * 119.99772 * 180.02562 * 21 20 19 24 24 C 1.46503 * 119.99629 * 180.02562 * 23 21 20 25 25 C 1.52998 * 117.49726 * 223.62097 * 24 23 21 26 26 C 1.53001 * 60.00203 * 252.50990 * 25 24 23 27 27 C 1.46838 * 111.19692 * 298.25626 * 19 18 17 28 28 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 31 31 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.52368 * 297.50073 * 16 14 13 33 33 H 1.08993 * 109.52242 * 57.63116 * 16 14 13 34 34 H 1.09001 * 109.50131 * 62.28757 * 17 16 14 35 35 H 1.08994 * 109.50034 * 182.40757 * 17 16 14 36 36 H 1.09005 * 109.46096 * 179.19094 * 18 17 16 37 37 H 1.08999 * 109.46883 * 299.17655 * 18 17 16 38 38 H 1.09000 * 109.46761 * 53.95673 * 20 19 18 39 39 H 1.08997 * 109.46835 * 173.95652 * 20 19 18 40 40 H 0.96994 * 120.00538 * 359.97438 * 23 21 20 41 41 H 1.09002 * 115.55281 * 9.32749 * 24 23 21 42 42 H 1.08998 * 117.50255 * 0.02562 * 25 24 23 43 43 H 1.09002 * 117.49846 * 145.02337 * 25 24 23 44 44 H 1.08993 * 117.50003 * 252.51179 * 26 25 24 45 45 H 1.09000 * 117.49469 * 107.48786 * 26 25 24 46 46 H 1.09000 * 109.46737 * 301.72264 * 27 19 18 47 47 H 1.08996 * 109.46232 * 181.75455 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7914 -5.5023 0.0056 13 7 2.8444 -6.3430 0.0022 14 6 2.3308 -7.7150 0.0024 15 1 1.4155 -7.7609 0.5926 16 6 2.0343 -8.1499 -1.4355 17 6 1.5551 -9.6043 -1.4319 18 6 2.6246 -10.4870 -0.7847 19 7 2.8718 -10.0309 0.5892 20 6 3.7912 -10.9389 1.2879 21 6 3.1305 -12.2812 1.4692 22 8 2.0048 -12.4636 1.0565 23 7 3.7907 -13.2788 2.0899 24 6 3.1486 -14.5839 2.2656 25 6 3.2957 -15.2659 3.6272 26 6 4.0588 -15.8046 2.4154 27 6 3.3778 -8.6526 0.6081 28 1 -0.4850 0.8400 -0.0004 29 1 3.1240 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8875 31 1 3.8012 -6.1834 0.0032 32 1 1.2574 -7.5115 -1.8563 33 1 2.9401 -8.0654 -2.0358 34 1 0.6278 -9.6805 -0.8642 35 1 1.3832 -9.9332 -2.4567 36 1 2.2804 -11.5211 -0.7675 37 1 3.5476 -10.4209 -1.3606 38 1 4.7010 -11.0582 0.6996 39 1 4.0414 -10.5224 2.2636 40 1 4.6912 -13.1331 2.4197 41 1 2.2074 -14.7203 1.7331 42 1 3.8698 -14.7435 4.3924 43 1 2.4510 -15.8511 3.9908 44 1 3.7162 -16.7440 1.9818 45 1 5.1353 -15.6366 2.3833 46 1 4.2972 -8.5951 0.0255 47 1 3.5806 -8.3542 1.6366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316938954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:16 Heat of formation + Delta-G solvation = -70.123429 kcal Electronic energy + Delta-G solvation = -26536.920095 eV Core-core repulsion = 22652.410922 eV Total energy + Delta-G solvation = -3884.509173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.31473 -40.70462 -39.30641 -37.91599 -35.77831 -34.57607 -34.14189 -33.57078 -31.73218 -29.66514 -28.55314 -27.64134 -24.65828 -23.95433 -23.25888 -22.73608 -21.74302 -21.47101 -20.95739 -19.79978 -18.28558 -17.83321 -17.75531 -17.17100 -16.87381 -16.55264 -16.48401 -16.35582 -15.85193 -15.55976 -15.44509 -15.14264 -14.81074 -14.74839 -14.66321 -14.30238 -14.12114 -13.65260 -13.53793 -13.48908 -13.14956 -12.91397 -12.90395 -12.58556 -12.49275 -12.39621 -12.29725 -11.92293 -11.79285 -11.69798 -11.61916 -11.44989 -11.15080 -10.97118 -10.72030 -10.25009 -10.09274 -9.72034 -9.28163 -8.65795 -8.33750 -6.11888 1.27331 1.42244 1.47453 1.58373 1.60538 1.63523 1.92323 2.26592 2.30214 3.00246 3.00565 3.01919 3.34194 3.67794 3.73470 3.83733 3.86331 3.96749 4.05827 4.06596 4.08571 4.20838 4.31302 4.33134 4.34725 4.43032 4.52392 4.57516 4.58801 4.68404 4.77745 4.84425 4.88106 4.97288 5.03899 5.05433 5.21584 5.24454 5.32141 5.43069 5.47550 5.56070 5.94832 6.05148 6.21030 6.54456 6.59201 7.07599 7.29016 7.31124 8.75793 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032172 B = 0.001637 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.118764 B =17102.477038 C =17398.468588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.127 4.127 11 C 0.535 3.465 12 O -0.566 6.566 13 N -0.706 5.706 14 C 0.150 3.850 15 H 0.059 0.941 16 C -0.127 4.127 17 C -0.108 4.108 18 C 0.059 3.941 19 N -0.543 5.543 20 C 0.043 3.957 21 C 0.512 3.488 22 O -0.566 6.566 23 N -0.692 5.692 24 C 0.054 3.946 25 C -0.189 4.189 26 C -0.171 4.171 27 C 0.065 3.935 28 H 0.271 0.729 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.418 0.582 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.417 0.583 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.070 0.930 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.128 -31.120 3.762 36.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.278 4.278 11 C 0.321 3.679 12 O -0.444 6.444 13 N -0.360 5.360 14 C 0.045 3.955 15 H 0.077 0.923 16 C -0.165 4.165 17 C -0.147 4.147 18 C -0.068 4.068 19 N -0.269 5.269 20 C -0.088 4.088 21 C 0.299 3.701 22 O -0.444 6.444 23 N -0.344 5.344 24 C -0.052 4.052 25 C -0.228 4.228 26 C -0.209 4.209 27 C -0.063 4.063 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.255 0.745 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.147 0.853 40 H 0.255 0.745 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.131 0.869 46 H 0.088 0.912 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.764 -31.494 3.715 35.414 hybrid contribution 2.386 1.410 -0.275 2.785 sum 18.150 -30.084 3.440 35.303 Atomic orbital electron populations 1.70196 1.08050 1.28527 1.48142 1.26144 0.95941 1.03375 0.93755 0.84892 0.78666 0.76270 0.78016 1.17858 1.20014 1.19995 1.23247 0.95391 0.91922 1.58690 0.89752 1.85658 1.10781 0.99394 1.97050 1.23364 1.03437 0.94100 1.06940 1.20090 0.86230 0.86700 0.74867 1.90704 1.17652 1.86047 1.49980 1.45660 1.10282 1.04510 1.75542 1.20827 0.97873 0.80146 0.96637 0.92276 1.21937 1.01581 0.96543 0.96469 1.21455 0.98660 0.93604 1.00942 1.22175 0.97877 0.99627 0.87129 1.61297 1.46770 1.01378 1.17433 1.22007 0.94345 0.89617 1.02805 1.21033 0.85899 0.86460 0.76685 1.90698 1.20563 1.83021 1.50145 1.45242 1.19298 1.10447 1.59401 1.21553 0.99281 0.82619 1.01735 1.23482 1.03846 1.03605 0.91842 1.23446 0.99188 0.97088 1.01211 1.22172 0.95210 0.86554 1.02401 0.92036 0.86947 0.87088 0.74491 0.94203 0.90021 0.93334 0.90093 0.90327 0.93160 0.88545 0.85254 0.74517 0.87055 0.87522 0.87975 0.87373 0.86875 0.91188 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.57 13.22 21.65 0.29 -56.29 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.16 9.50 67.96 0.65 -30.51 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.16 -8.75 20.57 -56.49 -1.16 -9.91 16 10 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 11 C 0.54 19.94 7.81 87.66 0.68 20.62 16 12 O -0.57 -27.18 15.52 -3.01 -0.05 -27.23 16 13 N -0.71 -17.52 5.08 -442.29 -2.25 -19.77 16 14 C 0.15 3.64 2.62 45.05 0.12 3.75 16 15 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 16 C -0.13 -3.03 5.58 30.68 0.17 -2.85 16 17 C -0.11 -2.41 6.09 30.65 0.19 -2.22 16 18 C 0.06 1.09 5.11 86.32 0.44 1.54 16 19 N -0.54 -9.51 4.39 -900.94 -3.96 -13.47 16 20 C 0.04 0.44 5.45 85.56 0.47 0.91 16 21 C 0.51 8.15 7.50 87.66 0.66 8.81 16 22 O -0.57 -14.93 13.91 -3.03 -0.04 -14.97 16 23 N -0.69 -6.62 5.57 -442.52 -2.46 -9.08 16 24 C 0.05 0.61 6.43 44.99 0.29 0.90 16 25 C -0.19 -1.41 10.46 30.59 0.32 -1.09 16 26 C -0.17 -0.99 10.46 30.60 0.32 -0.67 16 27 C 0.06 0.98 4.93 86.33 0.43 1.41 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 30 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 31 H 0.42 6.82 8.60 -92.71 -0.80 6.03 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.74 5.80 -2.38 -0.01 1.73 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.43 8.12 -2.39 -0.02 0.41 16 39 H 0.13 0.76 7.98 -2.39 -0.02 0.74 16 40 H 0.42 1.01 8.83 -92.71 -0.82 0.19 16 41 H 0.11 1.87 7.40 -2.39 -0.02 1.85 16 42 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.10 1.25 8.01 -2.39 -0.02 1.23 16 Total: -1.00 -86.58 398.87 -2.60 -89.19 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.63 Total: 18.66 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.63 Total: -2.80 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -8.38 Total: -98.60 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.09 Total: -42.20 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -86.58 -2.60 -89.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316938954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.064 kcal (2) G-P(sol) polarization free energy of solvation -86.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds