Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00044 * 2 1 4 4 H 1.48493 * 109.46959 * 270.00068 * 3 2 1 5 5 H 1.48500 * 109.46797 * 29.99845 * 3 2 1 6 6 H 1.48500 * 109.47040 * 149.99985 * 3 2 1 7 7 C 1.38813 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99826 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00062 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99990 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47068 * 35.00103 * 10 9 7 12 12 C 1.53002 * 109.47411 * 155.00183 * 10 9 7 13 13 N 1.46503 * 109.46849 * 304.99988 * 12 10 9 14 14 C 1.34775 * 120.00100 * 179.97438 * 13 12 10 15 15 O 1.21549 * 119.99926 * 0.02562 * 14 13 12 16 16 C 1.47931 * 120.00066 * 180.02562 * 14 13 12 17 17 C 1.39503 * 119.59337 * 179.73052 * 16 14 13 18 18 C 1.38228 * 119.18460 * 179.74879 * 17 16 14 19 19 C 1.39790 * 118.39411 * 0.51089 * 18 17 16 20 20 C 1.48263 * 120.43989 * 179.77011 * 19 18 17 21 21 C 1.40942 * 126.25292 * 359.67303 * 20 19 18 22 22 N 1.30627 * 108.07342 * 179.81347 * 21 20 19 23 23 N 1.40001 * 108.56511 * 0.44161 * 22 21 20 24 24 H 0.97000 * 125.86992 * 179.71691 * 23 22 21 25 25 C 1.34711 * 108.25821 * 359.70949 * 23 22 21 26 26 C 1.39741 * 119.11447 * 359.74884 * 19 18 17 27 27 N 1.31300 * 120.73411 * 359.97438 * 26 19 18 28 28 C 1.52997 * 109.47212 * 275.00043 * 10 9 7 29 29 C 1.53001 * 117.50135 * 128.74414 * 28 10 9 30 30 C 1.53000 * 117.49905 * 60.08424 * 28 10 9 31 31 H 0.96993 * 120.00090 * 0.02562 * 1 2 3 32 32 H 0.97005 * 120.00770 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47047 * 64.99775 * 12 10 9 34 34 H 1.08997 * 109.47298 * 185.00434 * 12 10 9 35 35 H 0.97000 * 120.00112 * 0.02562 * 13 12 10 36 36 H 1.08001 * 120.40925 * 0.02562 * 17 16 14 37 37 H 1.08007 * 120.80451 * 180.25712 * 18 17 16 38 38 H 1.08006 * 125.96084 * 359.97438 * 21 20 19 39 39 H 1.08007 * 126.19773 * 180.02562 * 25 23 22 40 40 H 1.08004 * 119.63035 * 180.02562 * 26 19 18 41 41 H 1.09006 * 115.55153 * 274.41794 * 28 10 9 42 42 H 1.09002 * 117.49734 * 0.02562 * 29 28 10 43 43 H 1.08994 * 117.49847 * 145.02044 * 29 28 10 44 44 H 1.09001 * 117.49936 * 214.98052 * 30 28 10 45 45 H 1.08999 * 117.50086 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5650 -3.2063 -0.5888 12 6 5.4996 -2.2587 -0.6079 13 7 5.3626 -1.6633 -1.9395 14 6 6.4608 -1.3849 -2.6695 15 8 7.5649 -1.6284 -2.2233 16 6 6.3224 -0.7832 -4.0138 17 6 7.4651 -0.4934 -4.7598 18 6 7.3258 0.0639 -6.0171 19 6 6.0363 0.3263 -6.4888 20 6 5.8346 0.9282 -7.8286 21 6 6.8466 1.2961 -8.7380 22 7 6.2741 1.7856 -9.8052 23 7 4.8869 1.7599 -9.6184 24 1 4.2220 2.0685 -10.2537 25 6 4.6342 1.2326 -8.4048 26 6 4.9400 0.0134 -5.6808 27 7 5.1120 -0.5206 -4.4937 28 6 4.2577 -2.9757 1.4380 29 6 3.8337 -4.4171 1.7268 30 6 2.9740 -3.2520 2.2232 31 1 -0.4850 0.8400 -0.0004 32 1 3.8647 -0.3620 0.0014 33 1 6.0785 -1.5914 0.0306 34 1 6.0110 -3.2177 -0.6897 35 1 4.4815 -1.4686 -2.2954 36 1 8.4463 -0.7060 -4.3618 37 1 8.1925 0.2950 -6.6188 38 1 7.9099 1.1894 -8.5809 39 1 3.6590 1.0782 -7.9669 40 1 3.9400 0.2122 -6.0371 41 1 5.1107 -2.5817 1.9906 42 1 3.4515 -5.0059 0.8929 43 1 4.4075 -4.9713 2.4695 44 1 2.9825 -3.0402 3.2924 45 1 2.0257 -3.0737 1.7162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317020143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = 115.753932 kcal Electronic energy + Delta-G solvation = -28248.710293 eV Core-core repulsion = 24269.110167 eV Total energy + Delta-G solvation = -3979.600126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.70650 -40.41778 -38.85771 -37.55473 -34.76790 -33.77148 -33.31488 -32.14592 -31.81318 -31.17435 -29.44262 -28.21679 -24.92050 -24.16742 -23.30802 -22.21962 -21.95693 -21.68284 -20.89488 -20.34841 -19.74387 -18.62642 -18.22729 -17.27210 -16.57016 -15.52670 -15.45376 -15.31395 -15.26198 -15.16585 -14.94017 -14.65131 -14.38223 -13.94097 -13.89835 -13.61431 -13.46198 -13.26624 -12.91286 -12.75115 -12.38910 -12.24103 -11.48427 -11.36881 -11.32220 -10.90577 -10.85958 -10.70599 -10.60983 -10.23895 -10.17373 -10.16785 -9.75292 -9.70328 -9.60737 -9.44026 -9.34476 -8.97507 -8.75417 -8.27205 -7.31924 -5.78727 -3.14287 0.34394 1.12886 1.47917 2.28642 2.38526 3.02895 3.34805 3.38995 3.42501 3.46144 3.92898 4.06444 4.23151 4.36548 4.43015 4.58483 4.61062 4.65761 4.82639 4.90882 5.04282 5.14098 5.16557 5.36687 5.43770 5.48002 5.59590 5.60300 5.69386 5.78298 5.82840 5.95889 5.96522 6.01116 6.06544 6.15836 6.22499 6.44399 6.51182 6.58445 6.72064 6.75943 6.80374 7.02051 7.12495 7.61109 7.94462 7.95506 8.39046 8.43799 9.16987 9.90004 10.09253 11.39066 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.002811 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.709401 B = 9960.218318 C =11619.249593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.010 3.990 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.238 4.238 8 H 0.092 0.908 9 N -0.741 5.741 10 C 0.198 3.802 11 H 0.065 0.935 12 C 0.113 3.887 13 N -0.695 5.695 14 C 0.566 3.434 15 O -0.548 6.548 16 C 0.070 3.930 17 C -0.102 4.102 18 C -0.087 4.087 19 C -0.026 4.026 20 C -0.204 4.204 21 C 0.072 3.928 22 N -0.294 5.294 23 N -0.470 5.470 24 H 0.444 0.556 25 C 0.086 3.914 26 C 0.099 3.901 27 N -0.441 5.441 28 C -0.163 4.163 29 C -0.193 4.193 30 C -0.155 4.155 31 H 0.259 0.741 32 H 0.362 0.638 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.421 0.579 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.188 0.812 39 H 0.186 0.814 40 H 0.160 0.840 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.184 -0.387 -15.924 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.186 4.186 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.367 4.367 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.088 3.912 11 H 0.083 0.917 12 C -0.011 4.011 13 N -0.346 5.346 14 C 0.350 3.650 15 O -0.426 6.426 16 C -0.068 4.068 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.030 4.030 20 C -0.217 4.217 21 C -0.116 4.116 22 N -0.115 5.115 23 N -0.176 5.176 24 H 0.288 0.712 25 C -0.063 4.063 26 C -0.063 4.063 27 N -0.151 5.151 28 C -0.185 4.185 29 C -0.231 4.231 30 C -0.192 4.192 31 H 0.069 0.931 32 H 0.195 0.805 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.259 0.741 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.205 0.795 39 H 0.203 0.797 40 H 0.177 0.823 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.163 -0.329 -16.214 20.272 hybrid contribution 0.301 1.469 0.001 1.500 sum 12.464 1.140 -16.214 20.483 Atomic orbital electron populations 1.69687 1.05052 1.25754 1.57464 1.24606 0.95098 0.96969 1.01955 0.86638 0.79264 0.85330 0.77820 1.21051 1.21967 1.20411 1.18994 0.80290 0.94516 1.42946 0.89002 1.42825 1.04125 1.01677 1.89739 1.20021 0.89732 0.89766 0.91634 0.91730 1.21728 0.98546 0.98225 0.82594 1.45903 1.10081 1.61173 1.17453 1.17832 0.84708 0.78606 0.83842 1.90756 1.25789 1.54479 1.71596 1.21203 0.89383 1.00416 0.95806 1.22008 1.00235 0.96291 0.93767 1.21464 0.96762 0.97691 0.95399 1.19239 0.94345 0.96932 0.92447 1.18770 0.92294 1.13868 0.96718 1.24030 1.00406 0.96726 0.90434 1.77257 0.87144 1.23909 1.23173 1.46250 1.06775 1.49697 1.14887 0.71192 1.22788 1.00278 0.96318 0.86934 1.22776 0.98616 0.95714 0.89170 1.67553 1.24653 1.09388 1.13550 1.22949 0.99083 0.97053 0.99423 1.22955 1.05450 0.91318 1.03408 1.22851 0.96824 1.00400 0.99091 0.93119 0.80471 0.91606 0.90965 0.74076 0.83364 0.84218 0.79509 0.79669 0.82303 0.89127 0.89387 0.90053 0.90217 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.97 55.49 0.78 -27.32 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 7 C -0.24 -6.19 9.11 -15.06 -0.14 -6.32 16 8 H 0.09 2.56 7.14 -52.48 -0.37 2.18 16 9 N -0.74 -16.27 4.34 -53.42 -0.23 -16.51 16 10 C 0.20 3.59 2.70 -67.93 -0.18 3.41 16 11 H 0.06 1.21 7.84 -51.93 -0.41 0.80 16 12 C 0.11 1.87 5.22 -4.04 -0.02 1.85 16 13 N -0.69 -11.80 5.38 -61.22 -0.33 -12.13 16 14 C 0.57 9.54 7.80 -12.29 -0.10 9.45 16 15 O -0.55 -10.16 16.31 5.32 0.09 -10.07 16 16 C 0.07 1.03 6.75 -83.00 -0.56 0.47 16 17 C -0.10 -1.21 9.61 -39.11 -0.38 -1.59 16 18 C -0.09 -0.82 9.68 -39.01 -0.38 -1.20 16 19 C -0.03 -0.25 5.90 -104.63 -0.62 -0.87 16 20 C -0.20 -1.71 6.05 -105.35 -0.64 -2.34 16 21 C 0.07 0.58 11.45 -17.04 -0.20 0.38 16 22 N -0.29 -2.64 12.66 30.82 0.39 -2.25 16 23 N -0.47 -3.03 7.32 30.65 0.22 -2.81 16 24 H 0.44 1.45 8.96 -182.67 -1.64 -0.19 16 25 C 0.09 0.56 11.40 -16.88 -0.19 0.37 16 26 C 0.10 1.12 10.73 -17.22 -0.18 0.94 16 27 N -0.44 -6.44 9.51 -9.55 -0.09 -6.53 16 28 C -0.16 -2.77 5.36 -90.62 -0.49 -3.25 16 29 C -0.19 -2.91 10.18 -26.69 -0.27 -3.18 16 30 C -0.15 -2.75 9.78 -26.69 -0.26 -3.01 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.36 8.18 5.66 -40.82 -0.23 7.94 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.42 7.51 7.45 -40.82 -0.30 7.21 16 36 H 0.15 1.63 7.63 -52.49 -0.40 1.23 16 37 H 0.14 0.86 7.16 -52.48 -0.38 0.49 16 38 H 0.19 0.98 7.41 -52.48 -0.39 0.59 16 39 H 0.19 0.66 7.30 -52.48 -0.38 0.27 16 40 H 0.16 1.38 7.03 -52.48 -0.37 1.02 16 41 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 42 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.11 2.30 6.23 -51.93 -0.32 1.98 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -34.20 382.04 -9.72 -43.92 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -6.89 Total: 15.63 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -4.69 Total: -4.73 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: 0.74 Total: -67.53 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.20 -9.72 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317020143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.675 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds