Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00208 * 2 1 4 4 H 1.48496 * 109.47146 * 270.00676 * 3 2 1 5 5 H 1.48502 * 109.46544 * 30.00622 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00212 * 3 2 1 7 7 C 1.38797 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00369 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00152 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47207 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00017 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99741 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99970 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.26621 * 34.51084 * 14 13 11 16 16 C 1.52777 * 109.27094 * 275.00213 * 14 13 11 17 17 C 1.52810 * 108.27877 * 300.89494 * 16 14 13 18 18 C 1.52873 * 109.92349 * 294.17628 * 17 16 14 19 19 H 1.09003 * 110.92470 * 288.11058 * 18 17 16 20 20 C 1.55034 * 107.01856 * 166.13424 * 18 17 16 21 21 N 1.47947 * 107.06305 * 244.01061 * 20 18 17 22 22 C 1.46892 * 111.00237 * 143.30022 * 21 20 18 23 23 C 1.50704 * 109.46942 * 52.30739 * 22 21 20 24 24 N 1.34780 * 119.99461 * 179.97438 * 23 22 21 25 25 O 1.21278 * 120.00215 * 359.97438 * 23 22 21 26 26 C 1.48896 * 106.05970 * 22.63665 * 21 20 18 27 27 C 1.52669 * 111.89154 * 52.61754 * 18 17 16 28 28 H 1.09002 * 107.14478 * 202.42469 * 27 18 17 29 29 C 1.49082 * 117.89562 * 322.96424 * 27 18 17 30 30 H 0.96999 * 119.99690 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46879 * 60.00106 * 10 9 7 32 32 H 1.09005 * 109.47371 * 300.00295 * 10 9 7 33 33 H 0.97002 * 120.00666 * 359.97438 * 13 11 10 34 34 H 1.08996 * 109.70278 * 181.19463 * 16 14 13 35 35 H 1.09005 * 109.70175 * 60.58998 * 16 14 13 36 36 H 1.08998 * 109.39382 * 174.03951 * 17 16 14 37 37 H 1.08996 * 109.32104 * 54.26563 * 17 16 14 38 38 H 1.09002 * 109.91355 * 3.35789 * 20 18 17 39 39 H 1.08992 * 109.91555 * 124.45754 * 20 18 17 40 40 H 1.09004 * 109.47351 * 172.30646 * 22 21 20 41 41 H 1.09000 * 109.46980 * 292.30314 * 22 21 20 42 42 H 0.96993 * 120.00635 * 0.02562 * 24 23 22 43 43 H 0.97002 * 119.99031 * 179.97438 * 24 23 22 44 44 H 1.09003 * 110.84667 * 203.29291 * 26 21 20 45 45 H 1.08999 * 110.84617 * 79.67858 * 26 21 20 46 46 H 1.08996 * 108.18298 * 155.66932 * 29 27 18 47 47 H 1.08994 * 108.18345 * 272.30442 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0008 14 6 2.3303 -7.7151 -0.0019 15 1 1.4108 -7.7543 -0.5859 16 6 2.0343 -8.1439 1.4342 17 6 3.3292 -8.0474 2.2398 18 6 4.3418 -9.0692 1.7228 19 1 4.0497 -10.0819 2.0009 20 6 5.7192 -8.6868 2.3230 21 7 6.5988 -8.3193 1.1916 22 6 7.4888 -7.2089 1.5558 23 6 8.2123 -7.5439 2.8347 24 7 9.0882 -6.6662 3.3630 25 8 8.0064 -8.6030 3.3884 26 6 5.6933 -7.9330 0.0745 27 6 4.5465 -8.9546 0.2142 28 1 4.9314 -9.9140 -0.1317 29 6 3.3592 -8.6338 -0.6284 30 1 -0.4850 0.8401 0.0004 31 1 3.1244 -3.7314 0.8895 32 1 3.1245 -3.7314 -0.8905 33 1 3.8009 -6.1835 -0.0004 34 1 1.6714 -9.1716 1.4435 35 1 1.2822 -7.4842 1.8670 36 1 3.1176 -8.2470 3.2903 37 1 3.7432 -7.0442 2.1382 38 1 5.6075 -7.8378 2.9974 39 1 6.1380 -9.5365 2.8620 40 1 8.2150 -7.0488 0.7587 41 1 6.8998 -6.3029 1.6980 42 1 9.2527 -5.8190 2.9203 43 1 9.5536 -6.8817 4.1863 44 1 6.1951 -8.0423 -0.8870 45 1 5.3251 -6.9158 0.2076 46 1 3.7114 -8.1715 -1.5505 47 1 2.8653 -9.5694 -0.8903 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330457592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = -72.865716 kcal Electronic energy + Delta-G solvation = -28176.129980 eV Core-core repulsion = 24291.501892 eV Total energy + Delta-G solvation = -3884.628088 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06481 -39.77678 -38.65835 -36.21920 -34.07384 -33.41240 -32.45452 -32.09950 -31.04930 -28.80660 -27.59070 -26.76804 -25.49682 -23.09664 -22.30712 -21.65862 -20.66791 -20.27293 -18.79271 -17.92180 -17.65484 -17.05940 -16.91933 -16.25884 -15.70842 -15.48265 -15.20218 -15.04025 -14.83133 -14.63516 -14.18828 -14.10236 -13.75603 -13.63883 -13.40556 -13.20753 -12.83411 -12.70890 -12.59199 -12.30422 -11.98193 -11.90643 -11.60921 -11.57466 -11.19693 -11.09018 -11.05056 -10.80117 -10.70871 -10.43072 -10.20678 -10.09159 -9.98435 -9.83315 -9.35194 -9.09465 -8.83180 -8.71628 -8.25457 -6.52047 -6.24119 -3.94598 2.27546 2.98050 3.03389 3.11171 3.19600 3.25740 3.29759 3.69283 3.71683 4.17857 4.22089 4.27368 4.45302 4.56889 4.78873 4.87082 4.88799 4.90543 4.99369 5.08646 5.11073 5.20647 5.21871 5.29571 5.35582 5.38207 5.50382 5.58329 5.67117 5.73920 5.80176 5.85409 5.89324 5.96120 6.04629 6.09718 6.15537 6.20850 6.26786 6.37721 6.53984 6.55831 6.72891 6.94718 7.56510 7.73577 7.89939 8.32293 8.63947 9.21082 10.83292 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.002910 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.636227 B = 9618.740392 C =11519.925291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.733 5.733 14 C 0.151 3.849 15 H 0.089 0.911 16 C -0.130 4.130 17 C -0.112 4.112 18 C -0.093 4.093 19 H 0.084 0.916 20 C 0.048 3.952 21 N -0.501 5.501 22 C 0.021 3.979 23 C 0.517 3.483 24 N -0.858 5.858 25 O -0.528 6.528 26 C 0.038 3.962 27 C -0.083 4.083 28 H 0.076 0.924 29 C -0.114 4.114 30 H 0.268 0.732 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.392 0.608 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.402 0.598 43 H 0.402 0.598 44 H 0.087 0.913 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.994 -17.563 2.413 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.317 3.683 12 O -0.391 6.391 13 N -0.389 5.389 14 C 0.046 3.954 15 H 0.107 0.893 16 C -0.169 4.169 17 C -0.150 4.150 18 C -0.112 4.112 19 H 0.103 0.897 20 C -0.080 4.080 21 N -0.225 5.225 22 C -0.110 4.110 23 C 0.301 3.699 24 N -0.422 5.422 25 O -0.403 6.403 26 C -0.090 4.090 27 C -0.102 4.102 28 H 0.094 0.906 29 C -0.153 4.153 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.227 0.773 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.230 0.770 43 H 0.233 0.767 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.911 -18.972 2.476 24.257 hybrid contribution 2.395 2.584 0.398 3.545 sum 17.306 -16.388 2.874 24.007 Atomic orbital electron populations 1.70015 1.05948 1.27463 1.46798 1.24988 0.95020 0.99009 0.94546 0.86177 0.79387 0.81626 0.78355 1.20251 1.20732 1.19747 1.22860 0.94857 0.91731 1.59003 0.91025 1.85411 1.04865 0.96218 1.96688 1.23539 1.06560 0.95783 1.04604 1.20294 0.86658 0.86289 0.75092 1.90695 1.15306 1.85558 1.47499 1.46325 1.09554 1.05493 1.77525 1.20551 0.97405 0.80852 0.96621 0.89263 1.21824 0.97721 1.01764 0.95572 1.21587 0.95299 0.98783 0.99330 1.21881 0.95004 0.99960 0.94320 0.89734 1.23285 0.90702 1.01589 0.92411 1.64757 1.17912 1.32912 1.06950 1.22269 0.98137 0.94584 0.96036 1.20545 0.79327 0.83857 0.86190 1.43865 1.46341 1.21946 1.30083 1.90751 1.63524 1.23786 1.62225 1.23451 0.92866 0.97313 0.95383 1.20662 0.94494 0.99891 0.95186 0.90584 1.20586 0.95418 1.00300 0.98955 0.92165 0.89588 0.89425 0.77273 0.91091 0.90876 0.91925 0.92069 0.93873 0.88795 0.87459 0.91359 0.76978 0.76686 0.89420 0.93634 0.90893 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.63 7.81 -10.99 -0.09 9.54 16 12 O -0.52 -11.43 15.51 5.56 0.09 -11.35 16 13 N -0.73 -9.45 4.07 -54.66 -0.22 -9.67 16 14 C 0.15 1.70 2.73 -68.80 -0.19 1.51 16 15 H 0.09 1.18 7.55 -51.93 -0.39 0.78 16 16 C -0.13 -1.44 5.63 -26.94 -0.15 -1.59 16 17 C -0.11 -1.14 4.78 -26.89 -0.13 -1.26 16 18 C -0.09 -0.82 3.31 -89.78 -0.30 -1.12 16 19 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 20 C 0.05 0.48 4.60 -2.17 -0.01 0.47 16 21 N -0.50 -4.55 5.25 -231.32 -1.21 -5.77 16 22 C 0.02 0.16 5.49 -4.98 -0.03 0.13 16 23 C 0.52 4.51 7.62 -10.98 -0.08 4.43 16 24 N -0.86 -4.34 8.87 31.22 0.28 -4.07 16 25 O -0.53 -6.76 14.67 5.56 0.08 -6.67 16 26 C 0.04 0.29 5.87 -2.08 -0.01 0.28 16 27 C -0.08 -0.67 2.54 -92.08 -0.23 -0.90 16 28 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 29 C -0.11 -0.94 4.82 -29.42 -0.14 -1.08 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 32 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 33 H 0.39 4.17 5.83 -40.82 -0.24 3.94 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.68 6.93 -51.93 -0.36 0.32 16 38 H 0.04 0.46 6.75 -51.93 -0.35 0.11 16 39 H 0.09 1.12 6.90 -51.93 -0.36 0.76 16 40 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.44 7.90 -51.93 -0.41 0.03 16 42 H 0.40 0.92 8.83 -40.82 -0.36 0.56 16 43 H 0.40 1.79 8.93 -40.82 -0.36 1.42 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.36 5.35 -51.93 -0.28 0.08 16 46 H 0.07 0.58 7.93 -51.93 -0.41 0.17 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -36.30 379.81 -10.00 -46.30 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.29 Total: 3.65 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.94 Total: -5.23 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.43 Total: -44.72 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.17 Total: -18.02 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.30 -10.00 -46.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330457592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.561 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds