Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86809 * 119.99585 * 2 1 4 4 H 1.48497 * 109.47104 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.46943 * 29.99961 * 3 2 1 6 6 H 1.48497 * 109.46910 * 149.99761 * 3 2 1 7 7 C 1.38796 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99554 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00095 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09000 * 109.03517 * 35.00491 * 14 13 11 16 16 C 1.52535 * 109.05032 * 276.03393 * 14 13 11 17 17 C 1.53801 * 111.69583 * 293.53984 * 16 14 13 18 18 C 1.51622 * 107.04506 * 302.43831 * 17 16 14 19 19 H 1.08999 * 110.50258 * 304.74888 * 18 17 16 20 20 C 1.53083 * 116.61942 * 176.27398 * 18 17 16 21 21 N 1.49063 * 103.42159 * 204.05450 * 20 18 17 22 22 C 1.46895 * 110.99874 * 146.44030 * 21 20 18 23 23 C 1.50701 * 109.47439 * 49.49709 * 22 21 20 24 24 N 1.34774 * 120.00294 * 179.97438 * 23 22 21 25 25 O 1.21282 * 119.99585 * 359.97438 * 23 22 21 26 26 C 1.48658 * 108.29825 * 24.34811 * 21 20 18 27 27 C 1.52331 * 105.83319 * 3.20648 * 26 21 20 28 28 H 1.09006 * 109.87103 * 87.66778 * 27 26 21 29 29 C 1.51290 * 117.42322 * 214.59986 * 27 26 21 30 30 H 0.97002 * 120.00159 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 32 32 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 33 33 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 34 34 H 1.09005 * 109.02952 * 54.10836 * 16 14 13 35 35 H 1.09005 * 109.03286 * 172.96407 * 16 14 13 36 36 H 1.09001 * 109.94276 * 61.82429 * 17 16 14 37 37 H 1.09003 * 109.94124 * 183.05531 * 17 16 14 38 38 H 1.09005 * 110.62630 * 322.54162 * 20 18 17 39 39 H 1.09000 * 110.62754 * 85.56691 * 20 18 17 40 40 H 1.09001 * 109.47062 * 169.49509 * 22 21 20 41 41 H 1.08998 * 109.47329 * 289.49456 * 22 21 20 42 42 H 0.97000 * 120.00029 * 359.97438 * 24 23 22 43 43 H 0.96997 * 120.00074 * 179.97438 * 24 23 22 44 44 H 1.08996 * 110.17645 * 244.11558 * 26 21 20 45 45 H 1.08998 * 110.17102 * 122.30134 * 26 21 20 46 46 H 1.08997 * 109.95483 * 59.45118 * 29 27 26 47 47 H 1.09004 * 109.85063 * 298.26727 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 0.0012 10 6 4.0867 -2.9843 0.0025 11 6 5.5732 -3.2322 0.0026 12 8 6.3442 -2.2959 0.0024 13 7 6.0459 -4.4943 0.0092 14 6 7.4909 -4.7353 0.0154 15 1 7.9783 -3.9591 0.6053 16 6 8.0122 -4.6732 -1.4168 17 6 7.4644 -5.8284 -2.2718 18 6 7.8682 -7.1191 -1.5863 19 1 8.9474 -7.1502 -1.4362 20 6 7.3550 -8.4181 -2.2128 21 7 7.3720 -9.3812 -1.0751 22 6 6.2702 -10.3464 -1.1860 23 6 6.2531 -10.9320 -2.5744 24 7 5.3218 -11.8473 -2.9083 25 8 7.0773 -10.5796 -3.3913 26 6 7.2785 -8.6089 0.1916 27 6 7.1225 -7.1509 -0.2211 28 1 6.0678 -6.9185 -0.3691 29 6 7.7689 -6.1044 0.6598 30 1 -0.4850 0.8400 -0.0004 31 1 3.6442 -3.4320 -0.8874 32 1 3.6435 -3.4308 0.8926 33 1 5.4294 -5.2432 0.0097 34 1 7.7108 -3.7259 -1.8639 35 1 9.1008 -4.7273 -1.4015 36 1 6.3779 -5.7636 -2.3320 37 1 7.8961 -5.7878 -3.2719 38 1 6.3409 -8.2878 -2.5906 39 1 8.0224 -8.7509 -3.0078 40 1 6.4114 -11.1442 -0.4569 41 1 5.3238 -9.8412 -0.9930 42 1 4.6628 -12.1294 -2.2548 43 1 5.3106 -12.2239 -3.8021 44 1 8.1876 -8.7382 0.7788 45 1 6.4101 -8.9322 0.7657 46 1 8.8436 -6.2775 0.7156 47 1 7.3332 -6.1406 1.6583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330457593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = -72.115996 kcal Electronic energy + Delta-G solvation = -27698.052502 eV Core-core repulsion = 23813.456925 eV Total energy + Delta-G solvation = -3884.595577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08231 -39.87053 -38.78578 -36.39869 -34.14332 -33.45951 -32.45009 -31.81411 -31.00439 -28.92039 -27.63848 -26.87252 -25.61457 -23.19005 -21.61300 -21.19775 -21.09081 -20.78889 -19.32200 -17.96402 -17.81640 -17.21310 -16.48980 -16.25553 -15.79988 -15.56568 -15.46908 -15.12803 -14.96487 -14.59841 -14.12828 -13.95788 -13.87946 -13.67453 -13.40198 -13.25611 -12.82154 -12.79680 -12.67969 -12.47427 -12.12937 -11.97493 -11.83210 -11.53425 -11.27531 -11.25247 -11.01784 -10.82876 -10.61396 -10.42655 -10.37144 -10.14328 -9.92618 -9.86360 -9.48699 -9.02105 -8.92475 -8.69880 -8.50780 -6.92527 -6.30176 -4.01717 2.21683 2.77276 2.91853 2.99322 3.31044 3.34746 3.49841 3.61061 3.66964 4.05416 4.29698 4.32221 4.37479 4.49276 4.71954 4.73468 4.80570 4.85039 4.90604 4.97492 5.08945 5.11017 5.19627 5.21859 5.23756 5.31978 5.37911 5.48688 5.57997 5.68672 5.71294 5.75522 5.87419 5.88817 5.99460 6.03165 6.06330 6.15357 6.21639 6.32890 6.49857 6.53126 6.63122 6.88834 7.63469 7.84442 7.92891 8.40013 8.51847 9.16147 10.79065 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.002301 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.825875 B =12163.322212 C =13124.672386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.087 0.913 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.520 6.520 13 N -0.731 5.731 14 C 0.149 3.851 15 H 0.088 0.912 16 C -0.129 4.129 17 C -0.103 4.103 18 C -0.103 4.103 19 H 0.086 0.914 20 C 0.060 3.940 21 N -0.514 5.514 22 C 0.027 3.973 23 C 0.515 3.485 24 N -0.858 5.858 25 O -0.526 6.526 26 C 0.050 3.950 27 C -0.120 4.120 28 H 0.072 0.928 29 C -0.108 4.108 30 H 0.271 0.729 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.395 0.605 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.401 0.599 43 H 0.403 0.597 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.798 -25.329 -0.977 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.105 0.895 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.386 5.386 14 C 0.044 3.956 15 H 0.106 0.894 16 C -0.168 4.168 17 C -0.141 4.141 18 C -0.122 4.122 19 H 0.104 0.896 20 C -0.067 4.067 21 N -0.238 5.238 22 C -0.105 4.105 23 C 0.299 3.701 24 N -0.423 5.423 25 O -0.401 6.401 26 C -0.078 4.078 27 C -0.140 4.140 28 H 0.090 0.910 29 C -0.146 4.146 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.230 0.770 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.229 0.771 43 H 0.233 0.767 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.999 -23.601 -1.368 28.546 hybrid contribution -2.472 -0.663 -0.041 2.560 sum 13.527 -24.264 -1.409 27.816 Atomic orbital electron populations 1.69938 1.05923 1.27773 1.48119 1.24717 0.94456 0.98984 0.93180 0.86731 0.81899 0.83256 0.79947 1.19206 1.19941 1.15907 1.22316 0.88337 0.97492 1.58740 0.89460 1.84790 1.09179 1.00086 1.97409 1.23283 0.94290 1.04353 1.05598 1.20257 0.90458 0.82477 0.75123 1.90694 1.58714 1.42214 1.47799 1.46161 1.07377 1.07751 1.77334 1.20953 0.81379 0.96984 0.96251 0.89388 1.21931 1.00493 0.99255 0.95094 1.21303 1.01072 0.93108 0.98645 1.22186 1.00689 0.94291 0.95024 0.89561 1.22891 1.00584 0.89621 0.93567 1.64333 1.40995 1.15904 1.02597 1.22258 0.95116 0.98153 0.94950 1.20576 0.80491 0.78977 0.90046 1.43868 1.34675 1.45521 1.18216 1.90761 1.37930 1.59443 1.51927 1.22610 1.02040 0.91532 0.91572 1.22083 1.00121 0.94670 0.97104 0.90976 1.21542 1.01627 0.92858 0.98614 0.91940 0.88726 0.88627 0.77013 0.90947 0.91300 0.91790 0.91562 0.93958 0.88235 0.87689 0.91644 0.77093 0.76659 0.89744 0.92153 0.89964 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.81 27.74 -169.99 -4.72 17.10 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.59 16 7 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 11 C 0.53 9.20 7.76 -10.98 -0.09 9.12 16 12 O -0.52 -10.98 15.51 5.55 0.09 -10.90 16 13 N -0.73 -8.95 4.66 -53.61 -0.25 -9.20 16 14 C 0.15 1.59 2.70 -67.73 -0.18 1.41 16 15 H 0.09 1.11 7.55 -51.93 -0.39 0.72 16 16 C -0.13 -1.37 5.42 -26.55 -0.14 -1.51 16 17 C -0.10 -0.98 5.57 -27.01 -0.15 -1.13 16 18 C -0.10 -0.87 2.49 -89.89 -0.22 -1.10 16 19 H 0.09 0.76 8.01 -51.93 -0.42 0.34 16 20 C 0.06 0.57 4.54 -2.58 -0.01 0.56 16 21 N -0.51 -4.24 5.26 -233.03 -1.23 -5.47 16 22 C 0.03 0.16 5.33 -4.98 -0.03 0.14 16 23 C 0.51 3.99 7.65 -10.99 -0.08 3.91 16 24 N -0.86 -3.40 8.87 31.22 0.28 -3.13 16 25 O -0.53 -6.33 14.43 5.56 0.08 -6.25 16 26 C 0.05 0.33 6.58 -3.19 -0.02 0.31 16 27 C -0.12 -0.89 2.22 -90.44 -0.20 -1.09 16 28 H 0.07 0.56 6.13 -51.93 -0.32 0.24 16 29 C -0.11 -0.83 5.35 -27.15 -0.15 -0.97 16 30 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 32 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 33 H 0.40 3.93 6.82 -40.82 -0.28 3.65 16 34 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.66 7.84 -51.93 -0.41 0.26 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.04 0.42 7.62 -51.93 -0.40 0.03 16 39 H 0.10 1.16 6.76 -51.93 -0.35 0.81 16 40 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.32 8.01 -51.93 -0.42 -0.10 16 42 H 0.40 0.38 8.83 -40.82 -0.36 0.02 16 43 H 0.40 1.42 8.93 -40.82 -0.36 1.05 16 44 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 45 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 46 H 0.08 0.56 8.03 -51.93 -0.42 0.15 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -36.34 380.71 -9.53 -45.87 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.46 Total: 2.10 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.84 Total: -4.51 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.42 Total: -43.58 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.17 Total: -17.15 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.34 -9.53 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330457593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.246 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds